>input_sequence_70866
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-------------------------------------------------------------------------------A
TGGCACCGATGGCGGCTTCGGCTACTGCATTCTGCGTCGCGCTGCTGCTGGTTTCCCTGCCCCGTGCCCATCCGGCGCCT
GAACCACAGACGACGGGGTCGTCGTCGTCCAGCTGCACCACCGAGCTCCTACGCCTCCTCCCCTGCCTCTCGTTCCTCGA
CGGCGGCGCCGCCGCGCCGCCCGACACGTGCTGCGCCAACCTGGGGAGCATGGTGCACGACCAGCCGCTGTGCCTCTGCC
AGGCGCTCAGCCAGTCCGGCTCCGGCAGGTCCCCAGTCGCCGTGAATATGTCCCGCGCCGTGCTGCTGCCTTCCGTCTGC
CGGCTCGATCTCCCCGCCGCCGCCAGCGCCTGCTCAGGTACCATAACTCAGCGCTGAATACTCTCCATTCGCGATCTCTT
TCTGCAAAATGATTTTCTTCGGCCAGGGAATCTACACATACTGAACTGAAATGTCTCGTTGGATTAATAACTGTCTTGAA
GGGCTCCTTCCAGCGGGACAAGAACCATCACCGCCGGTGAGCACGCCAGGCATGAGTGTGAACTCCACTGTTCCATCGAC
GCCGACGCCGACGACGCCGATGCCACCGCTGACAACAGCCGCACCGACGACCACCAGCCAGAATCCGGGATACAGCAGCG
GGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGTTTCATGGCGCTGGCAACAGTTTTAGGCTTCTAG------
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>chr2D_1_TraesCS2D01G325300
AGGGAAAATGAGAAAATGTCACTTCCTTT-ATTTCATGCCCATGAAAACCCAAAGCCCATTTTCTTTTTGCAGGCTAACG
TATTAAAGTCCACCGGCTCAGTCTCTCAAAGGTGCTCATAAGGGGAGGATGTGCGTGTGTGCGTTTATAGGGTTGAGCGT
ATGCGCGTATGTATGAGCGCTTGCGTTTGTACTGTGTTAAAAAAA-CCGTATTAAAGTCCAAATTCGGATGCTTTTGATT
TGCTGCTAATTATTCC-----------------------------GTAATGACATGTTATATACTCCCTCCGTTCCAAAA
TATAAGTCTTTGAAAAGATTCTACTATGAACTATATACGGATGTATATAGATGCATTTTAGGTGTGGATTTATTCATTTT
ACTTCGTATGTAGTCTATCTAGTAAAATCTCTATAAAGACTTACATTTAGGAATGGAGGGAGTATTTATCTTCGAAATTT
CAACCAAATTTAGCCACTG----TCGGTATTTACTGATGCCAAAATTGTGATGAGGATATTGTTCCTTTGCTCCTTGGTT
GCACGTAGTAGTAAATAAATGGAATTGCAGTGTTCCATCTAAAAGGGAACTTGCTGCAGGCCATCTAGGCACCTTATTTT
AGCAACACCCAAATTTGGCTGTAATTTCTCATGTGCTATAGTATTCGGTTAGGACTTGGGACATTCTGGTCAGCGGTCTC
AAGTGGCCGGTAAGAGTCAATCCCACTTCACATGAAACCCCAACCTACAACAAGGCAGTACAAGCACCATTCCCATGCGA
TCCCAGACCCCCAACGCAATCCCAACGCTCCGATTCACACAAAACTCCCCATCCCCACGCGGCTCTTCACGCATATCATC
TAG----TAGCAACGTTCAACTTCACGGAGGCCACGTCCGGAAGCACGCCGTTGCCATGCATGATGCATCCCGTTCCTCA
GATGCTATAAATCCCCACCTCCACCGTGGCCAATCACTCGATCAGATTCTTCACAGGCAAACTTGCAGAGAGCAGCACGA
TGGCACCGATGGCGGCTTCGGCTACTGCATTCTGCGTCGCGCTGCTGCTGGTTTCCCTGCCCCGTGCCCATCCGGCGCCT
GAACCACAGACGACGGGGTCGTCGTCGTCCAGCTGCACCACCGAGCTCCTACGCCTCCTCCCCTGCCTCTCGTTCCTCGA
CGGCGGCGCCGCCGCGCCGCCCGACACGTGCTGCGCCAACCTGGGGAGCATGGTGCACGACCAGCCGCTGTGCCTCTGCC
AGGCGCTCAGCCAGTCCGGCTCCGGCAGGTCCCCAGTCGCCGTGAATATGTCCCGCGCCGTGCTGCTGCCTTCCGTCTGC
CGGCTCGATCTCCCCGCCGCCGCCAGCGCCTGCTCAGGTACCATAACTCAGCGCTGAATACTCTCCATTCGCGATCTCTT
TCTGCAAAATGATTTTCTTCGGCCAGGGAATCTACACATACTGAACTGAAATGTCTCGTTGGATTAATAACTGTCTTGAA
GGGCTCCTTCCAGCGGGACAAGAACCATCACCGCCGGTGAGCACGCCAGGCATGAGTGTGAACTCCACTGTTCCATCGAC
GCCGACGCCGACGACGCCGATGCCACCGCTGACAACAGCCGCACCGACGACCACCAGCCAGAATCCGGGATACAGCAGCG
GGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGTTTCATGGCGCTGGCAACAGTTTTAGGCTTCTAGCGTTCT
GAAAAGATCCTCTAGACTTTCTGCAAACTAGCATTTTCCTAGAGAACTTAGTTATTCCCCCATGTTTTTCTTAGCATCTG
TAACAGCAAGAGGATTTAGTGGTTGAAGGAGTAATATGCTCATCCGGATGTTCTCCTGAATAAATAATTTTCACTTCAAT
TCTTTTTCGATGTCTTCTCCGTTCCATTTGTGCACTGGGTTCTTGTTTCAGCCAAGCAC-TATCTTGATAAATGATC---
-----------------------TAGGGAGTAATTATAGAGTACCACAATGTGCAAAACTCTTTCAAATTTATAAGTCAG
TTGGAACATAATCCATATGATAGG--AAAAAAAACTACAAGAAAACAGCACAATATAACAGCTAATCCTTTTTCTCTTCT
AAGCACAAGAGGTAGGCAACAATGCCAACAACTGGGATAAACCTTGCTACATTCACAAACTCTCTAGCTTTTGGTTTCAC
GTTCTGAAGATTGTCTCCAATCAACCATGGCTGGAATATCGAGTATAGCAATATGTCCCACAGAAATGCATAAGCAAGCC
GCTCGGTCAAGACATAATCCTGCGCATATTGCCACCGGTCCAAGACGCCTCCAAAATCAGCATCTGCACGGCCGAAGAAA
GCCCAAACAATGGATAAAATGCAGACCAGGCCACCAGTTATGCCTACACCTGATGCACCTCTCACCATGAGTGAACTCAG
TTTTGATGTCTGCGGTGGAGGCTGGTTCTTGTCGACATCGTTGAGCCGGATTGCCATGTAAGGAATCAAGAAAGCTACAA
ACAAAAATAGATGTAAGATAACCTGAACTGCTCAGCTGGTTCATTTTGGGTCAAGGAGATCATACTATTTGTGAGGAACA
TCTGACAGCCCCACAAGATGTCGAGCGATCCCTCGTACCGGTCCCTCCTAGCATCTGTGAAGAGGAGCGGTGCAAACAGC
AGTGTCCAGGCAATCACAAAATTGAACAATCCTTCTGACACCTAAGCAACGACTGACGAATTA
>chr2B_1
AGGTAAAATGAGAAAATGTCACTTTCTTTTATTTCATGCCCATGAGAACCCAAAGCCCATTTTCTTTTTGCAGGTTAA--
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-----------------------------------------------CGTACTAAAGTCCAAATTAGGATACTTCTGATT
TGCTGCTAATTATTCCTTTTTTGCGGGTATGCTGCTAATTATTCCGTAATGATATGTTCTAGTATATTTTAACATCATAT
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---------------------------------------------------------------------------AATTT
CAACCAAATTTAGCTACAGTATATCGGTGTCTATCGATACCAAAATTGTGATGAGGATATGGTTCCTTTGCTCCTTGGTT
GCACATAGTACTAAATAAATGGAATTGCATTGTTTCATCTAAAGGAAAACTTGC-GCAGGCCATTTGCTCACCTTATTTT
AGCAACACCAAAAATTAGCTTTAATTTCTCATGCGCTATAGTTGG----------TTAGGACATTCTGGTCAGCGGTCTC
AAGTGGCCAGTAAGAGTCAATCCCACTTCACATGAAACCCCCACCTACAACAAGGCAGTACAAGCACCATTCCCATGCGA
GCCCAGACCCCCAACGCAATCCCAACGCTCCAACTCACACAAAACTCCCCATCCCCACGCCGCTCTTCACGCATCTA---
-----TCTAGCAACGTTCCACTTCACGGAGACCACGTCCGGAAGCACGCCATTGCCATGCATC------CCCGTTCGTCA
GACGCTATAAATCCACACCTCCACCGTGGCCAATCACTCGATCAGATTCTTCACAGGCAGACTTGCAGAGAGCAGTACGA
TGGCACCGATGGCGGCTTCGGTTACCGCTTTCTGCGTCGCGCTGCTGCTGGTTTCCCTCCAGGGCGCCCACCCGGCGCCT
GAACCACAGACGACGGGGCCGTCGTCGTCCAGCTGCACCACCGAGCTCCTACGCCTCCTCCCCTGCCTCTCGTTCCTCGA
CGGCGGCGCCGCCGCGCCGCCCGACACCTGCTGCGCCAACCTGGGGAGCATGGTGCACGACCAGCCGCTGTGCCTCTGCC
AGGCCCTCAGCCAGTCCGGCTCCGGCAGGTCCCCTGTCTCCGTGAACATGTCCCGCGTCGTGCTGCTGCCTTCCCTCTGC
CGACTCGATGTCCCCGCCGATGCCAGCGCCTGCGCAGGTACCATAACTCAGCGCTGAATACTCTCCATCCGCGATCTCTT
TCCGCAAAATGATTTTCTTCGGCCAGGGGTTCGCTACGT-----ACTGAAAACCCTCTTTGAATCAATAACTGTCTTGAA
GGGCTCCTTCCAGAGGGACAAGCACCGTCGCCGCCGGTGAGCACGCCAGGCATGAGTGTGAACTCCACTGTTCCATCGAC
GCCGATGCCGACGACACCCATGCCACCACTGACAACATCCGCACCGACGACCACCAGCCAGAATCCGGGATACAGCAGCG
GGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGTTTCATGGCGCTGGCAACAGTTTTAGGCTTCTAGTGTTCT
GAAAAGATCGTCTAGACTTTCTGCAAACTAGAGTTTTCCTAGAGAACTTAGTTATTCCCTCGTGTTTTTCTTAGCATCTG
TAACAGCAAGAGGATTTAGTGGTTGAAGGAGTAATATGCTCACCCGGATGTTCTCCTGAATAAATAATTTTCACTTCAAT
TCTTTTTCGATGTCTTCTCCGTTCCATTTGTGCACTGGGTTCTCGTTTCAGCCAAGCACCTATCTAGATAAATAATC---
-----------------------TAGGGAGTAATTATAGAGTACCACAATGTGCAAAACTCTTTCAAATTTATAAGTCAG
TTAAAACATAATCCATATGATAGGGAAAAAAAAACTACAAGAAAACAGCGCAATATAACAGCTAATCCTTTTTCTCTTCT
AAGCACAAGAGGTAGGCAACAATGCCAAGAACTGGGATAAACCTTGCTACATTCACAAACTCTGTAGTTTTTGGTTTCGC
ATTCTGAAGATTGTCTCCAATCAACCATGGCTGGAATATCGAGTATAGCAGTATGTCCCACAGAAATGCGTAGGCAAGCC
GCTCGGTCAAGACATAATCCTGCGCATATTGCCACCGATCCAAGACACCTCCAAAATCAGCATCTGCCCGGCCGAAGAAA
GCCCAAACAATGGATAAAATGCAGACCAGGCCACCAGTTATGCCTACACCGGATGCACCTCGCACCATGAGTGAACTCAG
TTTTGATGTCTGCGGTGGAGGCTGGTTCTTGTCGACATCGTTGAGCCGGATTGCCATGTAAGGAATCAAGAAAGCTACAA
ACAAAAATAGATGTAAGATAATCTGAACTGTTCTGCTGGTTCATTTTGGGTCAAGGAGATCATACTATTTGTGAGGAACA
TCTGACAGCCCCACAAGATATCGAGCGATCCCTGGTAACGGTCCCTCCTACCATCCGTGAAGAGGAGCGGCGCAAACAGC
AGTGTCCAGGCAATGACAAAATTGAACAATCCTTCTGCCACCTAAGCAACGACTGACGAATTA
>chr2A_1
AGGGAAAATGAGAAAATGTCACTTCCTTT-ATTTCATGCCCATGAAAACCCAAAGCCCATTTTCTTTTTGTA-GCTAACG
TATTAAAGTCCACCGGCTCACACTCTCGAAGGTGCTCATAGGGGGAGGGTGTGCGTGTGTGCGTTTATAGGGTTGCGTGT
ATGCACGTATGTATGAGCGCTT-CGTCTGTACTGTGTAAAAAAAACCCGTATTAAAGTCCAAATTCGGATACTTTTGATT
TGCTGCTAATTATTCC-----------------------------GTA--------------------------------
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---------------------------------------------------------------------CTTCAAAATTT
CAACCAAATTTAGCTTCAGTCTATCGGTATTTACTGATGCCAAAATTGTGATGAGGATATGGTTCCTTTGCTCCTTGGTT
GCACATAGTAGAAAATAAATGGAATTGCAGTGTTCCATCTAAAAGGAAACTTCCTGCAGGCCATCTAGCCACCTTATTTT
AGCAACACCAAAATCTGGCTTTAATTTCTCATGTGCTTATTGT---GGTTAGGACTTAGGACATTCTGGTCAGCAGTCTC
AAGTGGCCGGTAAGAGTCAATCCCACTTCACATGAAACCCCTACCTACAACAAGGCAGTACAAGCACCATTGCCATGCGA
TCCCAGACCCCCAACGCAATCCCAACGCTCCGACTCACACAAAACTCCCCATCCCCACGCGGCTCTTCACGCATACTGTC
TAGTGTCTAGCAACGTTCAACTTCACGGAGATCACGTCCGGAAGCACGCCATTGCCATGCATC------CCCGTTCCTCA
GACTCTATAAATCCACACCTCCACCGTGGCCAATCACTCGATCAGATTCTTCACAGGCAGACTTGCAGAGAGCAATACGA
TGGCAGCAATGGCGGCTTCGGCTACTGCATTCTGCGTCGCGCTGCTGCTGGTTTCCCTCCAGGGCGCCCACCCGGCGCCT
GAACCACAGACCACGGGCCCGTCGTCGTCCAGCTGCACCACCGAGCTCCTACGCCTCCTCCCCTGCCTCTCCTTCCTCGA
CGGCGGCGCCGCCGCGCCGCCCGACACCTGCTGCGCCAACCTGGGGAGCATGGTGCACGACGAGCCGCTGTGCCTCTGCC
AGGCGCTCAGCCAGTCCGGCTCCGGCAGGTCCCCTGTCGCCGTCAACATGTCCCGCGCCGTGCTGCTGCCTTCCCTCTGC
CGGCTCGATCTCCCCGCCGCCGCCGGCGCCTGCCAAGGTA---TAACTTAGAGCTGGAAT-TCTCCATT--CGATCTCTT
TGTGCAAAATGGTTTTCTTCAGCCAGGGACTCGCTACAT-----ACTGAAATGTCTCTTTGAATCAATAACTGTCTTGAA
GGGCTCCTTCCAGCGGGACAAGAACCGTCACCGCCGGTGAGCGTGCCAAGCACGAGTGTGAACTCCACTGCTCCATCGAT
GCCGACGCCGATGACACCGATGACACCACTGACTACAGCCGCACCGAGGACGACCAGCCAGAATCCGGGATACAGCAGCG
GGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGTTTCATGGCGCTGGCGACAG--------TTCTAGCGTTCT
GAAATGATCATCTAGACTTTCTGCAAATTAGAGTTTTCCTAGAGAATTTAGTTATTGCCTGATGTTTTTCTTAGCGCCTG
TAACAGCAAGAGGATTTAGTTGTTGAAGGAGTGATTTGTTCATCCGGATGTTCTCCTGAATAAATAATTTTCACTTAAAT
TCTTTTTCGATGTCTTCTCCGTTCCATTTGTGCACTGGGTTCTCGTTTCAGCCAAGCAC-TATCTTGATAAATAATCCAG
GGCTTGTTTCAAAAAAAAATATCTAGGGAGTAATTGTAGAGTACCACAATGTGCAAAATTCTTTCAAATTTATAAGTCAG
TTAGAACATAATCCATATGATAGGGAAC-AAAAGCTACAGGAAAACAGCGCAATATAACAGCTAATCTTTTTTCTCTTCT
AAGCACAAGAGGTAGGCAACAATACCAAGAACTGGGATAAACCTTGCTACATTCACAAACGCTGTAGCTTCTGGTTTTAC
GTTCTGAAGATTGTCTCCAATCAGCCATGGCTGGAACATCGAGTATAGAAATATGTCCCACAGAAATGCATAAGCAAATC
GCTCGGTCAAGAAATAATCCTGCGCATATTGCCACCGGTCCAAGACGCCTCCAAAATCAGCATCTGCACGGCCAAAGAAA
GCCCAAGCAACGGATAGAATGCAGACCAGGCCACCAGTTATGCCTACACCTGATGCACCTCTCACTATGACTGAACTCAG
TTTTGTTGTCTGCGGTGGAGGCTGGTTCTTGTCGACCTCGTTGAGCCGGATTGCCATGTAAGGAATCAAGAAAGCTACAA
ACAAAAATAGGTATAAGATAACCTGAACTGTTCAGCTGGTTCATTTTGGGTCAAGGAGATCATACTATTTGTAAGGAACA
TCTGACAGCCCCACAAGATGTCGAGCGATCCCTTGTACCGGTCCCTCCTAGCATCCGTGAAGAGGAGCGGCGCAAATAGC
AGCGTCCAGGCAATTACAAAATTGAACAATCCTTCGTCCACCTAAGCAACCACGGAGCAATTA
>SNPs
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--------------------SS-----S------------S-------S--------------------------S-S--
----S-----------------S---S----------S--------------------------------S---------
----------------------------------------------------S-----S--SSS-SSS-SSSSSS--S-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------
--------------S--S------------------------------------------S-------------------
----S-----------------------------------------S---------------------S-----------
---------S----------S---------------------SSSS-----------S----------------------
-----------------------------------------S--------------------------------------
---------------------------------S------------------------------------------SS--
------------------------------S-------------------S-----------SSSSSSS-----------
--S-----------S--------------------------------------------S---------------S----
----------------------------------------------------------S-SSS-S-----S---------
------------------S-------------------------------------------------------------
---------------------------S----------------------------------------------------
----------------------------------S-----------S---------------------------S-----
---------------------------------S----------------------------------------------
-----------------------------S--SSS----SSSSS-------------S---S--S---------------
--------------------------S-----------------------------------------------------
---------------S-----------S----------------------------------------------------
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---------S---------------------SS--------------------------S--------------------
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-------------------------------------------S-----------------------------S------
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--S----------------------------------------------S------------------------------
----------------------------S----------------------------------S----------------
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------------------------------S-------------------------------------------------
---------------------------------S---------------------S--------------S---------
--------------S----------------------S-------------------------
>forward_183
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---CGCGTATGTATGAGCGCTTG---------------------------------------------------------
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>reverse_1315
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----------------------------------AGTCGCCGTGAATATGTCCC--------------------------
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>forward_565
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-----------------------------------------------------------------CTTTGCTCCTTGGTT
GCACG---------------------------------------------------------------------------
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>reverse_1394
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---------------------------------TCAGGTACCATAACTCAGCGC--------------------------
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>forward_629
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-------------------------------------------------CTTGCTGCAGGCCATCTAGG-----------
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>reverse_2591
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------------------------------CTCAGCTGGTTCATTTTGGGTC----------------------------
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