>input_sequence_70864
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----------------------------------------------------------CGGGCGCCAAACCCCCCCTCAA
CACTCTCGTGCTCCTCCCTCTTTCCTACCTCCCATCTT------------------------------------------
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------------------------------------------------TCCCACCGG----GCGCGCTC---------AG
CCAAACCAATCGACCGGAGCCAGTCGTCGGCACACTGCGGCCCATGGCCAAGGCGCGCAAGCCCACGGCGTTCTCCGCCG
CCGAGCGCTTCCTCGGCTTCCACCACCGCCCCGGCTCCGCCACCGTCGCCCCGTCCCCCTACGACGACCTGCCGGACCTG
GCCGAGTCGGACGTCTGGTATTCGCCATCGTCGGACGCGCCAACCACCACCGCGGATCAGGACGGGGTTCAGCGCACCGA
CAGGGCGCCCAGGGGCGAGCCGCCGCGGCGCGTGGGCGGCCTGAGCCACGCGTTCGCGGACGGGCGGCAGGTGGCGTCGT
CGGCGCCCGTCGAGGTGCCCGCGTGGCCGAGCCGGTTCGCCGACCTGGAGCCCGAGCCCGAGCCCGACGAGCAGCAGCAA
GAGGACGCCGACGGCTGGGTGCCGCCGCACGTGTACCTGGCGCGGCGTCAGGCCAGGGCCTCGGTGGTCGAGGGCGTCGG
ACGCACCCTCAAGGGCCGGGACGCGTCGCGGGTGCGTGACGCCGTCTGGAGCCGAACCGGATTCCCCGGATGAACTGAAC
CGGATCGGCCGGGCTGCTCGGAATCAGAAAAAAAATCCCCCTTTTTTCTTCCTTTGGGTCGCAAATTTTGTAATAT----
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>chr2A_1_TraesCS2A01G222500
CTGGGTCGTGTTAATCCCGCCCCTTCCCCCGCTTCCTCTATCCTATCCTATCTATGCTAATGGAGGCCATCGTCATGTGA
CACGATGTATCCATGCATGCATGCATAACTGATTCAAATCCTGATGCTCGCATTATTTTTGGATTTATTTTAGAATTTCC
GGCGATGCGTTTTCAATGGGAGGAGACGTTCTCATCGACGACGAGGCGCCTACGATAACTTCGTAAATCTCGAGATGATA
TGCCGGCTCAGTCTCTCGGAGATGCTCATAGGGATAGGATGTGCGTGTGTGCGTTCATAGAGGTGAGTGTATGCGCGTGG
ATATGAGCGCTTGTGTCTGTACTGATGCTAAAAAAAACACCAAGACGAAGAAGCAACAGCAGCAGCACGAAGCTTCCGCT
CTCGGCCCTCGACCAAGATGGGCTTTAACACAGGCGAGAAACCAACGCGTGCTTTTTTTTCATTATTTATTTA--TGAAA
CAAAAGGAAATCCACCTTCACCCAGGCGAAGCTCTCGCTAATCC------ATACA-------TACATGAGATACCTCCAC
CGGATACAGCCTAGGCGTACCA------AGTAGTACTGCTTCAGTGGCATTGACGCAGCACAGGCAGGCAAAGGTTATCC
ACTCGTCTCCATACGTACGT----TACGTATGGCTACGTTTGTAAACCGTGTCTAATAAGTACTCTACTCGGAGCCAGGA
GTAGTACAAAGTGCGCCACACGCGTAGGTTTCGTAACGCAGGTGTTGAGGTGTGCAGACAGCGAAAGAAGCAGCCACAAA
TTGACCGTATATACACGGAGGAGAGAAAATACAAAAAAGAAAGAAAAGCGGAGCCAAAAGGAGGCGGGAATACTGCGTGG
ACACGTTAACCATAACATAGCGCCAAG-----------------------------------------------------
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--------------------GTGGTTAGGAGGAGCCCGTCACGACAAACAACCCGGGCTCGGGCTCCTGCGTGGGCTGGG
CCCCGCCTCCCACCACCGCCGCCGTGTCCTATAAATCCTCGCCAGGTAGCCCCGGCCCCGGGCGCCAAACCCCCCCTCAA
CACTCTCGTGCTCCTCCCTCTTTCCTACCTCCCATCTT------------------------------------------
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------------------------------------------------TCCCACCGG----GCGCGCTC---------AG
CCAAACCAATCGACCGGAGCCAGTCGTCGGCACACTGCGGCCCATGGCCAAGGCGCGCAAGCCCACGGCGTTCTCCGCCG
CCGAGCGCTTCCTCGGCTTCCACCACCGCCCCGGCTCCGCCACCGTCGCCCCGTCCCCCTACGACGACCTGCCGGACCTG
GCCGAGTCGGACGTCTGGTATTCGCCATCGTCGGACGCGCCAACCACCACCGCGGATCAGGACGGGGTTCAGCGCACCGA
CAGGGCGCCCAGGGGCGAGCCGCCGCGGCGCGTGGGCGGCCTGAGCCACGCGTTCGCGGACGGGCGGCAGGTGGCGTCGT
CGGCGCCCGTCGAGGTGCCCGCGTGGCCGAGCCGGTTCGCCGACCTGGAGCCCGAGCCCGAGCCCGACGAGCAGCAGCAA
GAGGACGCCGACGGCTGGGTGCCGCCGCACGTGTACCTGGCGCGGCGTCAGGCCAGGGCCTCGGTGGTCGAGGGCGTCGG
ACGCACCCTCAAGGGCCGGGACGCGTCGCGGGTGCGTGACGCCGTCTGGAGCCGAACCGGATTCCCCGGATGAACTGAAC
CGGATCGGCCGGGCTGCTCGGAATCAGAAAAAAAATCCCCCTTTTTTCTTCCTTTGGGTCGCAAATTTTGTAATATGGTT
TGTTTGATTTTTGTTTCAGCGAGTTCATGAGAAGCGAGAGAATTCGCGAGAAAGACCAAAAGATGGTGTGCTTTGTTGTT
GTAGAATCATTGTACATTTTGTT----GAATTGTTGTTGATTGTGTAGTTAGGTAGGACTCAACCGAAGATGGTTGGAGT
ACTA---TTATTCTTTCTAGTTTGTTGTGGCCTAAAAA-AACAAAAACTGACCCATCTTTGTGACGGGAGCAATAATAAT
GGCATGCAGTGCATTTTCACCTGACTATGCTTTCAAACCATGCTTGTA-----GTTAGAAGTTG---TATTTTTTTTCCT
CGATCTTCTCTGTTCCAAATATTATAGCGCGTTTAGTGGGGGAAATTAGTGGAGTATGACCTCTCTTCCGAATT-TAAGA
CGTTTCGTAATTTCAATATGGACTACGTACAGACTTAAATACCAACAAATAGACTAAACTTTTCATCAATATACATCCGA
TTCGAAAAAAA----GTTACTAGAACATCTTATAATTCGGATTGGTTGGGAGGCAGAAGGTTTGAGTTTATGAGACATAT
GATCCATTATTTGGTTGGGAGGCAAGAGATTTGAGGAAGTGAAAAAGAATCATGGAGGCCAATTTCCACACCCTTGTCTT
CCCCATGTTAATGCAGATGGTATGAAATTTCTTCTCAAACTGCCACCAAATATATCATTTATAACATAGTT-----GCCT
AATATAAGGCTCTATACGTCCACGGACGCACTTGCTAGCATTGACCGGGCAATCCCCATTTGTCCCTATCCACAACCATA
GTCCCCATAGCGTTCCGAACTTCATAGACAGATCGTTTTTCTCTCCTTCCGGCTTCCTGGCGGCTGAAACCCTAGCCGCC
GCCAGGAGAGACCATCTTTCAGCGCCGTCCTCCGGCGGCTCCTCTTCGCCGGCGACCTCGGTCGTCGGTGGTGAGGGGGT
CGCCGGATTCACGCGAGTGGATCGTTTTTACTCCCGTGTAGTCTAGGTTCTTAGGTTGTTCA
>chr2D_40
---------------------------------------ATCCTATCCGAA-TATGCTAATGGAGGCCATCGTCATGTGA
CACGAGGTATCC----ATGCATGCATAATTGGTGCAGATGCTTCCATGC-------------------------------
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-----------------------------------AACACCAAGACGAAGAAGCAACAGCAGCA---CGAAGCTTTCGCT
CTCGGCCCTCGGTCAAGATGGGCTCTATCACAGACAAGAAACCAACGCGTGCTTTTTTTTCATTATTTATTTA--TGAAA
GAAAAGGAAATCCACCTTCACCCAAGCGAAGCTCTAGCTAATCCATACATATACA-------TACATGAGATACCTCCAC
CGGATACAGCCTAGGCGTACCA------AGTAGTACTACTTCAGTGGCATTGACGCAACACAGGCAGGCAAGGGTTATCC
ACTCGTCTCCATACGTACGTACGTTACGTATGGCTGCGTTTGTAAACCGTGTCTAATAAGTACT-----CGGAGCCAGGA
GTAGTACAAAGTGCGCCACACGCGTAGGTTTCGTAACGCAGGTGTTGAGGTGTGCAGACAGCGAAAGAAACAGCCACAAA
TTGACCGTATATATACGGAGGAGAGAAAATAC-AAAAAGAAAGAAAAGCGGAGCCAAAAGGAGGCGGGAATACTGCGTGG
ACACGTTAACCATA-----GCGCCAAG-----------------------------------------------------
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--------------------GTAGTTAGGGGGAGCCCGTCACGACAAACAACCCGGGCTCGGGCTCCTGCGTGGGCTGGG
CCCCGCCTCCCACCACCGCCGCCGTGGCCTATAAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCACCGC----GCGCGCTCCAAGCTCGAAG
CCAAACCAATCGAACGGAACCAGGCGCCGGCAC--TGCGGCCCATGGCGAAGGCGCGCAAGCCCACGGCGTTCTCCGCCG
CCGAGCGCTTCCTCGGCTTCCACCACCGCCCCGGCTCCGCCACCGTCGCCCCGTCCCCCTACGACGACCTGCCGGACCTG
GCCGAGTCGGACGTCTGGTATTCGCCATCGTCGGACGCGCCAACCACCACCGCGGATCAGGACGGGATTCAGCGCACGGA
CAGGGCGTCCAGGGGCGAGCCACCGCGGCGCGTGGGCGGGCTGAGCCGGGCGTTCGCGGACGGACGGCAGGTGGCGTCGT
CGGCGCCCGTCGAGATGCCCGCGTGGCCGAGCCGGTTCGCCGACCTGGAGCCCGAGCCCGAGCCCGACGAGCGTCCGCAA
GAGGACGCCGACGGCTGGGTGCCGCCGCACGTGTACCTGGCGCGGCGTCAGGCCAGGGCCTCGGTGGTCGAGGGCGTCGG
ACGCACGCTCAAGGGCCGGGACGCGTCGCGGGTGCGTGACGCCGTCTGGAGCCGAACCGGATTCCCCGGATGACCTCAAC
AAAATCGGCCGGGCTGCTCGGAATCAGAAAAAAT-TCCCCCTTTTCTCTTCCTTTGGGTCGCAAATTTTGTAATATGGTT
TGTTTGATTTTAGTTTCAATGAGTTCATGAGAAGC--GAGAATTCGCGAGAAAGACCAAAAAATGGTGTGGTTTGTTGTT
GTAGAATCATTGTACATTTTGTTTGTTGAATTGTTGTTGATTGTGTAGTTGGGTAGGATTCAACCGAAGATGGTTGGAGT
ACTA---TTATTCTTTCTAGTTTGTTGTGGCCTAAAAA-AACAAAAACTGACCCATCTTTGTGACGAGAGCAATAATAAT
GACATGCAGTGCATTTTCACCTGAGTATGCTTTCAAATCATGCTCGGA-----GTATATGTTAAAGTTATTTTTATTCCT
CGATCTTCTCTGTCCCAAATATTATAGAGCGTTTGGTTGGGGAAATT-----AGTATGACCTCTCTTCCGAATT-TAAGA
CGTTTCGTAATTTCAATATGGACTACCTACAGACTGAAATAGCGACAAATAGACTAAAATTTTCATCAATATATATCCGA
TTA-AAAAAAA----GTTACTGGAACATCTTATAATTCGGATTGGTTGGGAGGCAGTAGGTTTGAGTTTATGAGACATAT
GATCCATTATTTGGTTGGGAGGCAAGAGATTTGACGAAGTGGAAGAGAATCATGGAGGCCAATGTCCACACCCTCGTCTT
CCCCATGTTAATGCAGATAGGATGAATTTTATTCTCAAACTGCCACCACTTGTATCATCTAAGTACAACATAGTTGGCCT
AATATAAGGCCCTATACGCCCACGGACGCACTCACTAGCATTGACCGGGCAATCCCTATTTGTCTCTATCCACAAC----
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>chr2B_356
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-----------------------------------AACACCAAGACGAAGAAGCAACAGCAGCA---CGAAGCTTCCGCT
CTCGGCCCTCGACCAAGATGGGCTTTAACACAGGCGAGAAACCAACGCGTGTTTTTTTTTCATTATTTATTTATATGAAA
GAAAAGGAAATCCACCTTCACCCAAGCGAAGCTCTCGCTAATCCATACATACAGGCATACAGTACATGAGATACCTCCAC
CGGATATAGCCTAGGCGTACCAAGTTGTAGTAGTAGTACTTCAGTGGCATTGACGCAACACAGGCA----AAGGTTATCC
ACTCGTCTCCATACGTACGT----TACGTATGGCTAAGTTTGTAAACCGTGTCTAATAAGTACTCGTACTCGG---AGGA
GTAGTACAAAGTGCGCCACACGCGTAGGTTTCGTAACGCAGGTGTTGAGGTGTGCAGACAGCGAAAGAAACAACTACGAA
TTGACCG----TATACGGAGGAGAGAAACTAC-AAAAAGAAA----AGCGGAGCCAAAAGGAGCCGGGAATACTGCGTGG
ACACGTTAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGTAGTTGCGGGGAGCCCGTCACGACAAACAACCCGGGCTCGGGCTCCTGCGTGGGCTGGG
CCCCGCCTCCCACCACCGCCGCCGTGGCCTATAAATCCTCGCCAGGTAGCCCCGGCCCCGGGCGCCAAACCCCCCCTCAA
CACTCTCCTGCTCCTCCGTCTTTCCCACCTCCCATCTT------------------------------------------
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------------------------------------------------TCCCACCGCGCGCGCGCGCTC---------AG
CCAAACCAATCGACCGGAGCCAGCCGCCGGTAC--TGCGCCCGATGGCCAAGGCGCGCAAGCAGACGGCCTTCTCTGCCG
CCGAGCGCTTCCTCGGCTTCCACCACCGCCCCGGCTCCGCCACCGTCGCCCCGTCCCCCTACGACGACCTGCCGGACCTG
GCCGAATCGGACGTCTGGTATTCTCCATCGTCGGACGCGCCAACCACCACCGCGGATCAGGACGGGATTCAGCGCACGGA
CAGGGCGCCCAGGGGCGAGCCGCCGCGGCGCGTGGGCGGGCTCAGCCGGGCGTTCGCGGACGGGCGGCAGGTGGCGTCGT
CGGCGCCCGTCGAGGTGCCCGCGTGGCCGAGCCGGTTCGCCGACCTGGAGCTGGAGCCCGAGCCCGACGAGCAGCAGCAA
GACGACGCCGACGGCTGGGTGCCGCCGCACGTGTACCTGGCGCGGCGTCAGGCCAGGGCGTCGGTGGTCGAGGGCGTCGG
ACGCACGCTCAAGGGCCGGGACGCGTCGCGGGTGCGTGACGCCGTCTGGAGCCGAACCGGATTCCCCGGATGACCTCAAC
TAAATCGGCCGGGCTGCTCGGAATCAGAAAATTCA----CCTTTTTTCTTCCTTTGGGTCGCAAATTTTGTAATATGGTT
TGTTTGATTTTTGTTCCAACGAGTTTATGAGAAGC--GAGA----------AAGACCAAAAAATGCTGTGGTTTGTTGTT
GTAGAATCATTGTACAT----TTTGTTGAATTGTTGTTGATTGTGTAGTTGGGCAGGATTCAACCGAAGATGGTTGGAGT
ACTACTATTATTCTTTCTAGTTTGTTGTGGCCTGAAAAGAACAAAAACTGACCCATCTTTGTGACGAGAGCAATAATAAT
GACATGTAGTGCA-TTTCACCTGAGTATGCTTTCAAATCATGCTTGTACAGTAGTATATGTAGAAGTTG-TTTTTTTCCT
CGATCTTCTATGTCCCAAATATTATAGTGGGTTTGGTTGGGGAAATT-----AGTATGACCTCTCTTTCGAATTATAATA
CGTTTTGTAATTTTAATATGGACTACATAAC---------AGCCATAAATATGCTAAAACA--CATCAATATACATCCGA
TTT-GAAAAAAAAAAGTTACTAGAACATCTTATAATTCGGATTGGTTGGGAGGCATGAGGTTTGAGTTTATGAGAAATAT
GCTCCATTATTTCGTTGGGAGGC---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-SS----------------------------
-----S------SSSS------------S--S-S--S--S--SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------SSS-------------
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S-----------------------S-------------------------------------------------------
-------------------------------------S-------------------S----------------------
-----------------------------------------------------------------SSSS-----------
---------------------------------------------------------------------S----------
-------------S------------------S-----------------------------------------------
--------------SSSSS-------------------------------------------------------------
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----------------------S------S--------------------------------------------------
--------------------------S-----------------------------------------------------
-------S---------S-------S------------------------------------------------------
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--------------------------------------------------------S-----------------------
-----------------------S--S------SS---------------------------------------------
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------------------------------------------------------------------S----------S--
---------------------------------------S-------SS-------------------------------
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------S------------------------------------------------------------------S--S---
SSS------------------------------S----------------------------------------------
------------------S----------------SS------------------------S--------S---------
--------------------------------------------------S-------S---------------------
------------------------------------------------------------------S-------------
-S----------------------S------------S-----------------SSSSSS-SS----------------
-------------S-------------S------S--S---------SSSSS----------------------------
--------------------------S--------S-----S-S--------------S---------------------
--SS----------------------------------------------------S-----------------------
----------------------------------S------S--S------------------S----------S-----
------------------S-S-----S---S-----------------SS-S------S--SSSSSS-SS----------
----------S-------S-------------SS----------------------S-------S-----------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_221
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-----------------------------------------CGAGGCGCCTACGATAACTT-------------------
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>reverse_2259
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------------------GCGAGTTCATGAGAAGCGAG------------------------------------------
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