>input_sequence_70840
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---------------------------------------------------------------------------ATGCT
CGCCGACGACCTCCGGTGCCCGAACGCCTTCATCGGGCTCGGGAAGTGCCACCCCCACCGCGCCTTCGTCGCCGCCGCCT
TGGCCGCCACCGCCTTCGCCTCCACGGCCGTCGCGGAGACCGAGCTGGACCTCGCCAGCCCCAGCCTCTCCTCCTCGTCC
TCCTCCTCCGCCGCGCCCCCGTCCTTGGCAGAGGACTTCCAGAACGGCGCCCACCCCCAGACCCTCGCCTTTCGCCTCCC
GGAGGC------------CGCGACGGAGGCCATCGTGGCGGAGGAGGACGCGGCGACGGACCGCGAGCGCGCCACCCGGT
GCTCCCGCTCGATGAGGCTGTGCACCCGGCCGACGGCGTCGCCGGACGCCGAGGAGGAGGAGGATGGGGAGGCGCACGTG
CAGGGGCAGGGCCGCACCCGCGCGCAGTTGGGGCAGAGCCGCAGCAGCCGGTCGCGGAGGCAGTACGGGCACACCCCGCC
GCCGGATCTCGCCGCGGGGTGCTTCCGGCACCGCCACTCGTCGCCCCCGACGGCGTCCGCGGCCACCGCTGCCTTCTCCG
CCTTCATC------CGTGCGGTTGCTCTCGCTCGCCCG---------------CTCTCTCTCTCTCTCTGCCTCGCGCTT
CTTGGC----GAGTGGAAGGAGGGGGGCGTTACGAATACGAACTCACAGCGTCGCTGCGGGAAGGGGCGCGCCGGAGTGT
GTAATAAAGGAGGCA----CCGGCGGGGCTTAA-----------------------------------------------
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>chr6B_1_TraesCS6B01G291500
GAACAGCTCAAATACTGGTAGTGGTGACGAAGCGAGACATTTTCGTTTCTGGAAGAAGTGCAATCTTCTCCGAAAGATTC
CACGAACAAAGCTTGAGCTGTCGAGCAATGATTACCTCATCGGTGCAAACAGTGAGCTCCAAATGATTTCGACGGGAGTT
GAAACACCAGCCCGCGGTGAACCA-----------------------------------GCTCACAGCTCAATGCGCTGC
GTTTGCCGTCGAGGCAGCGGGTGCAGCCAGCGGCGGGCGACAGGGCCAGTGCACTAGACCAGGTAGTA--GAGCGAAGGG
TCCTCTCCTTCACCACTTGCAACGTAGGCGAGCGTGTGCTGCCCGGGCCCACATGTCGGCGAGACGAGGACACTGCGCTC
GAGCCG-CCTATTCCTAGTCCTGAACCTGCTCCACCCAAAGCAGCACGACTAGACCAGTGTGCACGACACACAAGCTGCT
ATCCCGTCACGTACTACTC------ACCTAGTACCCCCACTCCATACATAACATCAAAAGCTCTAGATAAATGGAGCAAT
GAA--CACCGCCGCACTGGTGCTTTTCACCTTTCCTATACACGCTAATGATAGTGGTGCCGTCGTGCT---TAACTGCTG
TTCGATGTTGTGCTG---GTACCATCGTGTTTAACTGTCTCACATGCCTGGGATTTCTAATTTTTATCCTGAATACCAAA
AATTC------------------------------------------------------AAGGAAGTAGCGCAGATCAAA
T--GGGAGCTTAAAATGTCCAATTTTGATGGTACTACACGGTGGAGCAGTAAGTGTACAGACACAACACCAAGGGACAAC
AAAAGCAGGGAGGAAATGACGCCGCCCAAAGGGTAATTGAGCGCATTGCGCCCAAATCACAGGCTTTCAG-TTTTAATCT
AGCTTAAACATCATAGCACATTAGCACGCGAGCCACAAAAGTGGAAAAGAAGAACCCCCATATAGTTAATTGATTATATT
ATAACCACCTCCTAAAAGCAAC-----AGACAGATCC-CCCCACTGGTGGTGAGGAATCTCACCCCCGCTCCGGCATGCT
CGCCGACGACCTCCGGTGCCCGAACGCCTTCATCGGGCTCGGGAAGTGCCACCCCCACCGCGCCTTCGTCGCCGCCGCCT
TGGCCGCCACCGCCTTCGCCTCCACGGCCGTCGCGGAGACCGAGCTGGACCTCGCCAGCCCCAGCCTCTCCTCCTCGTCC
TCCTCCTCCGCCGCGCCCCCGTCCTTGGCAGAGGACTTCCAGAACGGCGCCCACCCCCAGACCCTCGCCTTTCGCCTCCC
GGAGGC------------CGCGACGGAGGCCATCGTGGCGGAGGAGGACGCGGCGACGGACCGCGAGCGCGCCACCCGGT
GCTCCCGCTCGATGAGGCTGTGCACCCGGCCGACGGCGTCGCCGGACGCCGAGGAGGAGGAGGATGGGGAGGCGCACGTG
CAGGGGCAGGGCCGCACCCGCGCGCAGTTGGGGCAGAGCCGCAGCAGCCGGTCGCGGAGGCAGTACGGGCACACCCCGCC
GCCGGATCTCGCCGCGGGGTGCTTCCGGCACCGCCACTCGTCGCCCCCGACGGCGTCCGCGGCCACCGCTGCCTTCTCCG
CCTTCATC------CGTGCGGTTGCTCTCGCTCGCCCG---------------CTCTCTCTCTCTCTCTGCCTCGCGCTT
CTTGGC----GAGTGGAAGGAGGGGGGCGTTACGAATACGAACTCACAGCGTCGCTGCGGGAAGGGGCGCGCCGGAGTGT
GTAATAAAGGAGGCA----CCGGCGGGGCTTAACGACGTGTGGTTTTTCGGGCACGGAGAGAAGGCACGTAGCTTGCGGT
TATTCACGAGGGTGCCATCGGGTACAGCTGGGCAGTGGTTGCCGCGGGATCTTGTGCGGTTGCACCTCAACTGCTGTAGC
CTAGAACC-ACCGTATGAGAATGCATCATTCACGACGTGTAGAGCGCGTACA--TCTGAGCAAAGAAACAGCTTCCGATT
TGTTTTATTTGTAGCGCAAATCTGGCTTG---------------------------------------------------
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--------------ACAGATCTCCAGTCCGACTCTGAGCAACAGCGAGGAGCACCTACTGTGTCGTCGGCCGCAGAGGAT
CCCGAGGGTGCTCGAAAGATAAGGCTGCCCGCGCACGTGCGGGGCGGGAATGAGCCGTGCTTGGGTCAGTTACGCGGGGC
CCGCGTGTCGGTTTATGACGATGCGACCGAGACGGATGTTCCTTTATTTCTCTCGATTAA-------TTAATTATTTATT
AAATGAAACTTTGGTGCCCGTGTGGAGTGCACCTGCAGG--------CCGGTTGCAGTCTCGCGGATCTGGTTCGCAGCG
CGAATCGTAGGTATCGCGTC---TATTCTACACGCACGTCGCACAGGGCGCTACTGACTGACTGACTGACCCGGACGCAG
CCCAGCGTATCGCCGTCGAGGTGCTGTCCGCTTCTGCACGTGTGGTTGACGAACGGCGTCGCCTGTGTCGGGGCGCAGAG
CCGTGTTGTCTCGCCTTCGGGCGCCCGGCAAAGTCAAAACGA-TTAGGCGACCATTTTGCATTTTTTTGAGTTCTGTTAC
----------CAGCTTCAAGGTGTTAATATTAGTAGTAAATCT------TACTACTGTATTCCCTTAAAAAAAGAGATT-
------AGTACGAGGAGTGCACCTCACCTGCATCTCTTGA------AGTCGGTCTTGTGCAACCTTTCAGAAAAAAAGAA
GAAGAAGAAATTTCAAAAAAAGAAGAAGAAGAAGAAATAGACAAGATGCACACTCGTTCGCTCTCAAATCGCGCGCCAAC
GCCGCTGAAAGAGACCGATGCTAAAAATT
>chr6D_13
------------TACTAGTAGTAGTGACGAGGCGAGACATTTTCCTTTCGGGAGAGG--GCAATCTTCTCCGAAAGATTC
CACGAACAAAGCTTGAGCTGTTGGGCAATGATTACCTCATCGGTGCAAACAGTGAGCTCCAAATGATTTCGACGGGAGTT
GAAACATCAGCCCGCGGTGAACCAGTACTAGACCACAACGTGAAGAAGGGTAGGGGAGAGCTCACTGCTCAATGCGCTGC
GTTTGCCGTCGAGGCAGCGGGTGCAGCCAGCGGCGGGCGACAGGGCCAGCGCACTAGACCAGGTAGTA--GAGCGAAGGG
TCCTCTCCTTCACCACTTGCAACGTAGGCGAGCGTGTGCTGCACGGGCCCACATGTCGGCGAGACGAGGACACTGCGCTC
GAGCCG-CCTATTCCTAGTCCTGAACCTGCTCCACCCAAAGCAGCACGACGAGACCAGTGTGCACGACACACAAGCTGCT
ATCCCGTCACGTACTACTCACCTAGACCTAGTACCCCCACTCCATACATGACATCAAAAGCTCTAGATAAATTGAGCAAT
GAACACACCGCCGCACTGGTGCTTTTCACCTTTCCTAGACACGCTAATGATAGTGGTGCCGTCGTGCT---TAACTGCTG
ATCGATGTCGA------------------TTTAACTGTCTCACATGCCTAGGATTTCTAATTTTTATCCTGAATACCAAA
AAAAAAA-ACAATCAAGGATGCAAGGCAACGAGATTGCAGATTCACAGATGGTGCTGGAAAGAAAGTAGCGCAGATCAAA
TCGGGGAGCTTAAAATGTCCAATTT-GATGGTACTACACGGTGGAGTAGTAAGTGTACAGACACGACACCAAGGGACAAC
AGAAGCAGGGAGGAAATGACGCCGCCCAGAGGGTAATTGAGCGCGTTGCGCCCAAATCACAGGCTTTCAG-TTTTAATCT
AGCTTAAACATCATAGCACATTAGCACGCGAGCCACAAAAGTGGAAAAGAAGAACCCCCATATAGTTAATTGATTATACT
ATAGCCACCTCCTAAAAGCAAC-----AGACAGAT-CTCCCCACTGGTGGCGAGGAATCTCACCCCCGCTCCGGCATGCT
CGCCGACGACCTCCGGTGCCGGAACGCCTTCATGGGGCTCGGGAAGTGCCACCCCCACCGCGCCTTGGTCGCCGCCGCCT
TGGCCGCCACCGCCTTCGCCTCCACGGCCGTCGCGGAGACCGAGCTGGACCTCGCCAGCCCCAGCCTCTCCTCCTCCTCG
TCCTCCTCCGCCGCGCCCCCGTCCTTGGCAGAGGACTTCCAGAACGGCGCCCACCCCCAGACCCTCGCCTTTCGCCTCCC
GGAGGC------------GGCAACGGAGGCCATCGCGGCGGAGGATGACGCGGCGACGGAGCGCGAGCGCGCCACCCGGT
GCTCCCGCTCGATGAGGCTGTGCACCCGGCCGACGGCGTCGCCGGACGCCGAGGAGGAGGAGGACGGGGAGGCGCAGGTG
CAGGGGCAGGGCCGCACGCGAGCGCAGTTGGGGCAGAGCCGCAGCAGCCGGTCGCGGAGGCAGTACGGGCACACCCCGCC
GCCGGATCTCGCCGCGGGGTGCTTCCGGCACCGCCACTCGTCGCCGC---CGGCGGCCGCGGCCACCGCTGCCTTCTCCG
CCTTCATCTC----CGTGCGGTTGCTCTCG---------------------------CTCTCTCTCTCTGCCTCGCGCTT
CTTGGCAAGCGAGTGGAAGGAGGGGGGCGTTACGGATACGAACTCACAGCGTCGCTGCGGGAAGGGGCGCGCCGGAGTGT
GTAATAAAGGAGGCAATTCCCGGCGGGGCTTAACGGCGTGTGGTTTTTCGGGCACGGAGACAAGGCACGTAGCTTGCGGT
TATTCACGAGGGTGCCATTGGGTACAGCTGGGCAGTAGTTGCTGCGGGATCTTGTGCGGTTGCACCTCAACTGCTGTAGC
CTAGAACC-ACCGCATGAGAATGCATCATTCAGGACGTGTAGGGAGCATACA--ACTGAGCAAAGAAACAGCTTCTGATT
TGTTTTGTTTGTAGCACAAATCTGGCTAG---------------------------------------------------
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--------------AAAAATCTCCAGCCCGATTCTGAGCAACGGCGAGGAGCACCTGCTGTGTCGTCGGCCGCAGAGGAT
CCCGAGGGTGCTCGAAAGATAAGGCTGCCCGCGCACGTGCGGGGCGGGAATGAGCCGTGCTTGGGTCAGTTACGCGGGGC
CCGCGTGTCGGTTTATGACGATGCGACCGAGACGGCTGTTCCTTTATTTCTCTCAATGAGTTTAACTTTAATTATTTATT
GAATGAAACTTTGGTGCCCGTGTGGAGTGCACCTGCAGA--------GCGGTTGCAATCTCGCAGATCTGGTTCGTAGCG
CGAATCGTAGGTATCGCGTC---TATTCTACACGCACGTCGCACAGGGCGCTACTGACTGACTGACTA---CGGCCGCAG
CCCAGCGTACCGCCGTCGAGGTGCTGTCCGCTTCTGCACGTGTGGTTGACGAACGGCATCGCCTGCGTCGGGGCGCAGAG
CCGTGTTGTCTCGCCTTCGGGCGCCCGGCAAAGTCAAAACGA-TTAGGCCACCATTTTGCATTTTTTGAGATTTA-TTAC
TAGTTATTACCACCTTCGAGGTGTTAATATTAGTACTAGTAACTCTTACTAC---TGTATTCCC-TAGAAAAAGAGATT-
------AGTACGAGGAGTGCACTTCACCTGCATCACTTGTAG---TAGTCGGTCTTGTGCAATACGTACTAAAAGAAGAA
ATAAACAACCTTTCAAAAAAA-----------------AAAAAAGATGCACACTCGTTCGCTCTCAAATCGCGCGCCAAC
GCCGCTGAAAGAGACCGATGCTAAAAATT
>chr6A_67
------------------------------------------------------------------TCTCCGAAAGATTC
CACGAACAAAGCTTGAACTGCTGGGCAATGATTACCTAATCGGCGCAAATAGTGAGCTCGAAATCATTTCGACGGGAGTT
GAAACAACAGCCCGCGGTGAACCTGTACTAGACCACAACGTGAAGAA--------GAGAGCTCACTGCTCAATGCGCTGC
GTTTGCCGTCGAGGCAGCGGCG---------GGCGGGCGACAGGGCCAGTGCACTAGACCAGGCAGTACTGAGCGAAGGG
CCCTCTCCTTCACCACTTGCAACGTAGGCGAGCGTGTGCTGCACGGGCCCACATGTCGGCGAGACGAGGACAGTGCGCTC
GAGCCGCCCTATTCCTAGTCCTGAACCTGCTCCACCCAAAGCAGCACGACTAGACCAGTGTGTACGACACACAAGCTGCT
ATCCCGTCACGTACTAATC------GCCTAG-------------TACACAACATGAAAAGCTCTAGATAAATGGAGCAAT
GAACG--CCGCCGCACCGGTGCTTTTCACCTTTCGATCG-ACGCTAATGATAGTGGTGCCGTCGTGCTGCTTAACTGCTG
ATCGATGTCGTGCTGGTAGTACCATCGTGTTTAACTGTCTCACAGGCCTGGGTTTTCTAATTTTTATCCTGAATACCGAA
AAAAAAAGACAATCAAGGATGCAATGCAACGAAATTGCAGATTCACAAATGGTGCTGGAAAGAAGGTAGCGCAGATCAAA
TCGGGGAGCTTAAAATGTCCAATTA-GATGGTACTACACGGTGGAGCAGCAAGTGTACAGACACGACACCGAGGGACAAC
AAAAGCAAGGAGGAAATGACGCCGCCCAGAGGGTAATTGAGCGCATTGCGCCCAGATCACAGGCTTTCGGTTTTTAATCT
AGCTTAAACATCGTATCACATTAGCACGCGAGCCACAAAAGTGGAAAAGAAGAACCCCCATATAGTTAATTGATTATATT
ATAACCACTTCCTAAAAGGAAAGCAAGAGACAGAT-C-CCCCACTGGTGGCGAGGAATCTCACCCCCGCTCCGGCATGCT
CGCCGACGACCTCCGGTGCCGGAACGCCTTCATGGGGCTCGGGAAGTGCCACCCCCACCGCGCCTTGGTCGCCGCCGCCT
TGGCCGCCACCGCCTTGGCCTCCACGGCCGTCGCCGAGACCGAGCTGGACCTCGCCAGCCCCAGCCTCTCCTCCTCGTCC
TCCTCCTCCGCCGCGCTCCCGTCCTTGGCAGAGGACCTCCAGAACGGCGCCCACCCCCAGACCCTCGCCTTTCGCCTCCC
GGAGGCGGAGGCGGCCGCGGCGACGGAGGCCATCGCGGCGGAGGAGGACGCGGCGACGGAGCGCGAGCGCGCCACCCGGT
GCTCCCGCTCGATGAGGCTGTGCACCCGGCCGACGGCGTCGCCGGACGCCGAGGAGGAGGAGGATGGGGAGGCGCAGGTG
CAGGGGCAGGGCCGCACGCGCGCGCAGTTGGGGCAGAGCCGCAGCAGCCGGTCGCGGAGGCAGTACGGGCACACCCCGCC
GCCGGATCTCGCCGCGGGGTGCTTCCGGCACCGCCACTCGTCGCCCCCGACGGCGGCCGCGGCCACCGCTGCCTTCTCCG
CCTTCATCTCCCTCCGTGCGGTTGCTCTCGCTGATGACTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTGCCTCGCGCTT
CTTGGCAAGAGAGTGGAAGGAGGGGGGCGTTACGGATACGAACTCACAGCGT-----------------CGCCGGAGTGT
GTAATAAAGGAGGCA----CCGGCGGGGCTTAACGGCGTGTGGTTTTCCGGGCACGGAGAGAAGGCACGTAGCTCGCGGT
TATTCACGAAGGTGCCATCGGGTACAGCTGGGCAGCGGTTGCCGCGGGATCTTCTGCGGTTGCACCTCAACTTGCTATAG
TCTACTAGAACCGTATGACAACGCATCATTCAGGACGTGTAGATCACACATCTGACTGAGCAAAGAATCAGCTTCCGATT
TGTTTGTACTCCCTTCCTCCGGGCCTTTTTAGTTCGCATATAAGATTTGACTGAAGTCAAGTCTCGTAAAGTTTGACCAA
TTTTATAAGAAAAAGTATCAATATTCACAATCTGAAATCAATATAAAAAGATGTGTCATGACTTAAAGTTTCATAGTATT
GTATAACTTTAGCATGGCAGATGTTGATAATTTTTCATATAAATATGATCAAATCTCTAATATGCAGAATAAAAATGACC
GGAGGAGTACTAGCACAAATCTCCACTCTGATTCTGAGCAACGGCGAGGAGCACCTACGGTGTCGCCGGCCGCAGAGGAT
CCCGCTCGGGCTCGAAAGATAAGGCTGCCCGCGCACGTGCGGGGCGGGAATGAGCCGTGCTGGGGTCAGTTACGATGGGC
CCGCCTGTCGGTTTACGACGATGCGACCGAGACGGCTGTTCCTTTATTTCTCTCGATTAA-------TTAATTAATTATT
AAATGGAACTTTGGTGCCCGTGTGGAGTGCACCTGCCTGCAGAGTCACCGGTTGCAATCTCGCAGATCTGGTTCGTTGCG
CGGATCGTAGTTATCGCGTCTAGTATTCTACACGCACGGGAGCGGGGCAGCG----------------------------
--CAGCGTATCGCCGTCGAGGTGCTGTCCGCTTCTGCACGTGTGGTTGACGAACGGCGTCGCCTGTGTCGGGGCGCAGAG
CCGTGTTGTCTCGCCTTCGGGCGCCCGGCAAAGTCAAAAGGATTTAGGCGACCATTCTGCATTTTTTGAGATTTA-TTAC
----------CACCTTCGAGGTGTTAAGATTAGTAGTAACTCT------TAC---TGTATTCTC-TAAAAAAAGAGATTA
GTAGTAAGTACGAGGAGTGCACTTC---TGCATCACTTGTACTACTAGTCGGTCTTGTGCAATAC----TAAAAGAAGAA
ATAAACAACATTTCAAAAAAAGA------AGAAGAAATAAACAAGATGCACACTCGTTCGCTCTCAAATCGCGCGCCAAC
GCCGCTGAAAGAGACCGATGCTAAAAATT
>SNPs
SSSSSSSSSSSS----S-----S-------S-------------S----S---SSSSSS---------------------
---------------------S-S--------------------------------------------------------
------S----------------------------------------------------------S--------------
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------------------------------------------S-------------------------------------
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-------------------------------------S------------------------------------------
S-------S-----------------------------------------------------------------------
--SSS---------------------------------------------------------S-----------------
-------------------------S--------------------------------------S---------------
----------------------------S---------------------------------------------------
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-----------------------------------S--------------S-----------------------------
--------------------S------------S--------------------------------S-------------
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------------------S----------------S------------------------S-------------------
----------------------------------------------------------------------------S---
-----------------S--------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------SSSSSS------------------------------------------
----------------------------------S---------------------------------------------
-----------------------------------S--------------------------------------------
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--------------------------------S--------------S------S-------------------------
------S--------S----------------------------------------------------------------
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-----------------S-------------S----------S-------------------------------------
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-----------------------------------S--------------------------------------------
--------------------------------------------------------S------S-----------S----
-------------------------------------------------------------------SSSS---S-----
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-------------------------------------------------------------------SSSS--SSS----
------------S----S---------------------S------------SSS---------S---------------
----------------------S-----------S----S----------------------SSSS-SSS----S-----
SS-S-SS-S--------------SSSSSS----------S----------------------------------------
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>forward_641
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-------------------------------------------------------------CCGTCGTGCTTAACTGCTG
T-------------------------------------------------------------------------------
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>reverse_3000
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---------------------------------------AAGTCGGTCTTGTGCAACCT---------------------
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