>input_sequence_70837
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------------------------------------------------------------ATGGAAGGTAAGAGTGGTCT
CCGGGCTGTGATCCTCCTCCTGGGCGCGGTCCTCGTCATAGGGAGCTT--------------------------------
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-------------------------------------------------------------------GGTGCCGCTGGCC
CAGGCAGATCCGACGGCCGCCGCCACAGGAGCTGCGGACGCCAAGTTCTGCTGCAAGGACAAGATAGGGAGCCACTGCTA
CGCCGCCTGCATCACGCAGTACGGCCCCATCCCGTTCTGCGCAGAAATGTGCTGCTGTGTGCAGCTTACCAGCGGTAGAT
GCCCGAGGCAATGCCCTACCCCGGCCGACCCCAGACTTTTTCTTGCGAACAGCTCCACCTCCGACCTTCTCACCAGCAAC
GGTAAGCAAGCCACCACCAATCGAGCTCCCTGCATGTTAATTCGCG-----------TTACGCTCATCCATGTTTCCAAG
TTAATTAGTG-ATATCAGCTCTCTTGTTTTCC----CTTTTTGCCAGCCGTTGAGGTTGAGAGCTGCACGCTGAGGTGCT
CGTCCATCGTCTGTGACAGCATGCGCAATGGTAAATAAATACGTACTCC-------------------------------
-------------------------TAGATATGAAAAAAAATTCATCTGGAGGTTTAACTGAGGGTTGTAATTAATCAGA
TTGCGTCTAACGCA-CGTA------------CTGTATGTATGTTCTGGCACCAGTTATCGATGGCGGCAGCGAGGGGACG
AAAGCCGTCGTGGAGCGCTGCGGCGATGCATGCGGCCGCTTCTGTGCCGGCGCCGGCGGCGCTGCATCCCTTGATGCTTA
A-------------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G473800
CATGCATGTCTTTGCCGTCGTCGTTCTGCATCAGCCAGCCTCGCTGCCGCGCGTAGCCTCACGTCGCGCCGCGCACCACG
CCCAGTTGTTCCGTTGTGCAGCCGCGTCCTGCCAGGGGCCATGCGCTTTCCCCTCGTGCCTCGTGGACGCCTCCCCTGCG
GACTTCAGAATTCTTCCTCCGCTGATGAGAACTGCCGCTGTGATCGTTCTTCCCCGTTTTGCCGTGATGCCCTTCTGACC
GCCTGGATGGCCTTTCTCCCTCAACGGAGAGCAACGCGCTGATAACGTGATACGAGTAAAAACAAGAGAGATGTAAACAA
ATCCAACCAGTATCAATTTCCTTAATAATCAACCCTTATATACAACTGGAGGGGATGCAAGTAGAGGGGCGCGTCCACTC
GAGGGGGGGCGAGGGAACCGTCGTGATCGTTGACAGATTGGCAACGCACGTGCGGTTACACAAGAGAGGATTATCTCCTT
AATAACAATATTAATTAAATCCTAACAAAGTGCACACAGAGAATGGATTAGGCTAAGTACAACCGTTAGATTGAGTTTAG
TGAGCCTAATTATGCGGTGATAATAGATCCGTGTACGTTTTGTGGGGTGTGTTTAAAAAGTTCATGTTTACTCTTTTATT
AGTATAAGTAGATAAGTAGAGAAGAGATAGAGAATATTGAAACGGACCCAGATATTCAATAAACTGACAATGAAGACGAT
TAACGACAACAAAT-TCCGTTCACCAACCCAACGGATGA---GGCATTGACATGACACATGGGAGTGCACTGAGTAGGTA
GGAGTTCACCTATATGTACGTACATTTATGTTGATGAAGACATGGCATGACTAGATTTGTGTACC---ATGCACACTCAT
CAATCAATCAGATGTACGAACGGTGGATACGCCATCGATCATCTCCTATAAATAGGACCCATCCACGCGATTCTTGTTTC
ATCACCATCACCACACG-------------ATCCAAGTTTAAGCTGCACGTACGTACACCATGGAAGGTAAGAGTGGTCT
CCGGGCTGTGATCCTCCTCCTGGGCGCGGTCCTCGTCATAGGGAGCTT--------------------------------
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-------------------------------------------------------------------GGTGCCGCTGGCC
CAGGCAGATCCGACGGCCGCCGCCACAGGAGCTGCGGACGCCAAGTTCTGCTGCAAGGACAAGATAGGGAGCCACTGCTA
CGCCGCCTGCATCACGCAGTACGGCCCCATCCCGTTCTGCGCAGAAATGTGCTGCTGTGTGCAGCTTACCAGCGGTAGAT
GCCCGAGGCAATGCCCTACCCCGGCCGACCCCAGACTTTTTCTTGCGAACAGCTCCACCTCCGACCTTCTCACCAGCAAC
GGTAAGCAAGCCACCACCAATCGAGCTCCCTGCATGTTAATTCGCG-----------TTACGCTCATCCATGTTTCCAAG
TTAATTAGTG-ATATCAGCTCTCTTGTTTTCC----CTTTTTGCCAGCCGTTGAGGTTGAGAGCTGCACGCTGAGGTGCT
CGTCCATCGTCTGTGACAGCATGCGCAATGGTAAATAAATACGTACTCC-------------------------------
-------------------------TAGATATGAAAAAAAATTCATCTGGAGGTTTAACTGAGGGTTGTAATTAATCAGA
TTGCGTCTAACGCA-CGTA------------CTGTATGTATGTTCTGGCACCAGTTATCGATGGCGGCAGCGAGGGGACG
AAAGCCGTCGTGGAGCGCTGCGGCGATGCATGCGGCCGCTTCTGTGCCGGCGCCGGCGGCGCTGCATCCCTTGATGCTTA
ATGGAGTACGCCCTCATGCGTGCGTCCGGATGCGCTAGCAGCTGCGACTACACTGAGCGGCCCAGAGCAGATGCATCTCT
GTGTTTGCTCTTTGTTGTTTTTTTTCAGTACAGATAATTGGATTCCACCGTATGATGGCATGGCACGTACCCAAGCCAGT
GTGACGACGTCGCCTTGGATGTGGCGCACGTTCTTCTTTCTTTGTTCCAGTATAAGTTCATCATGTGGCGTGATGTGTTG
ATGCGTATGTACGTGTCGAACGAGCTAGCATGATGTACTATCATCCTAGCTTGCCAATGGAATAAAAGTTTGCCGATATA
TCAACTTTCTTCTGAATTATTGTTTTCTTGTAGTTATATGCTTTTTTGCCGGTTTGTCAACTTTCTTGTTTCTTTTCATT
TGTTTGATTATATTTTATTGTTCATTTTTCTTCTTTGCTCGAAGCTTTCTTTTCTCAGTACTTTCCTTTCACGTTTTATC
ATGAATGGAATAGAGTCAATAGACTAATAAAAACAAGTACAATATTGGTATTTGAAATATGGAACAACATCCACAAATAT
GGAGAATGTCTTCTTGAAAATACGGAACATATTATCCGCGATCACGACGGTGATGTTGTTGTCGCGGCAGCAGGTCGACT
AGCTCATGCCCAGGATGTTCTTCATACTGAAGCAGAGGAATGTTTACAGGCTCTGTACAAGGCACAAGAATTGGGAATTA
ACCAACTGGTGGTGGAAACGGATGCAATGCTTCTGGTACAAGCGATCAAGACGTCGAACTTTGATCTCTCCCCCAATGGT
GTCTTATTTAGGGAAATAAAAGCTTTTACTACTCTGAATTTTAGTGACTTCAGTATAATCAATTGCCCTCGGGCATGTAA
TAAGGTTGCAGACGTTTTAGCGTTGTATGGGTCAAAGATGGAGCTTGCACCCCAAGCCGTATGGCCGGGTCTCGCCCCTA
CCTTTGCCCAGTCTTTGGTTGCCAGCGATTCTGCTCGGCAC
>chr5D_673
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--------------------------------AATATTGAAACGGGCCCAGATATTCAATTAGCTCACAATGAAGGTGAT
TAACGACAAAAAAAATCCGCTCACCAACCAAACGGATGATGAGGCACTGACATGACACATGGGAGTGCACTGAGTAGGTA
GGGGTTCACCTACACGTACGTGCATTTATGTTGACGAAGACATGGCATGACTAGATTTACGTACC---ATGCACACTCAT
CAATCAATTAGATGTACGAACGGGGGATGCGCCGGCGATCACCTCCTAAAAATAGGACCGATCCACGCGATTCTTGCTTC
ACCACCATCATCACG-----CATATCGATCATCCAAGTTTTAGCTGCGCGTACACACGCCATGGAAGGCAAGGGTGGTCT
CCCGGCTATGATCCTCCTCCTGGGCGCAGTCCTCGTCATAGGGAGCTT--------------------------------
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--------------------------------------------------------------------GTGCCGCTGGCC
GAGGCAGATCCGACTGTCGCCGCCACCGGAGCTGCGGACGCCAAGTTCTGCTGCAAGGACAAGATAGGGAGCCACTGCTA
CGCCGCCTGCACCATGCAGTACGGCCCCATCCCGTTCTGCACGGAGATGTGCTGCTGTGTGCAGCTTACCAGCGGTAGAT
GCCCGAGGCAATGCCCCACCCCGGCCAACCCCAGACTTTTTCTTGCGAACAGCAGCACCTCCGACCTTCTCACCACCAAC
GGTAAGCAAGCCACCACCAA------------------------------------------------------------
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>chr5B_673
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--------------------------------AATATTTAAATGGACT-AGATATTCGATTAGCCGAGAATGAAGGTGAT
TAATGAC--AAAAAAATCGCTCACCAACCAAATCG--GATGAAGCATGGACATGACACATGGGAGTGCACTGAATAGGTG
GGAGTTAACCTACACGTACGTGCATTTATGTTGATAAAGACATGGCATGACTAGATTTCTGTACCATGATGCACACTCAT
CAATCAATCAAATGTACGAACGGTGGATACGCCAGGGATCATCTCCTGTAAATAGGGCCGATCCACGCGGTTCTTGTCTC
ACCACCATCATCACA-----TATATCGATC---CAAGTTTAAGCTGCAT----GTACGCCATGGAAGGCAAGGGTGGTCT
CCGGGCTGTGATCCTCCTCCTGGGCGCAGTCCTCGTCCTAGGGAGCTTGTGCCACTGGCCCAAGCAGATCAGACGGCCAC
CGCCACCGGAGCTGCGGACGCCAAGCAGATCAAACTTGACTCTATACTTTTATGTGTCGCCGGGTTTTGTAAATTGAACC
ACTCTTGTCAGTTTCTTGCTGACATCCAATTTGACCAGAGCTCTAATAAACTCCCCCACAAAGCCATTAGGGAGAGTTAC
TTGCACTTCTTGAACCTCACCTATGCGACTCGCAAGGTTTTGCAGGAAGCTCTTACTGTTGAGAACCCCATCCGGGAGCC
TATGGATCTGAGTCCAAGGCTCTAGCCTATCAAGCTTGACTTTTTCCGGCTTAGAAAAGCCATCATATTTAGCCATTATC
AAGGCGTGGCCTTTGAAATCCCAAGGTCCCTTATGCATGGCTTTATTCCAGTCACCTAGACAATTGAATTGGATCTAAAA
AAGATTCAGGTTTTTTCTTCTCCACACCACCGGCTGTGCCGGGTTCCAAGCAGCCTTCATGTCATCAATAAGAGCACTCT
GACTAAAGGATTTGTTTGTCAAGAGGCGGCACAAAGCCAGCCACTTGGGCCTTACCTCTGCTGCATCAATCTCACCATCC
CACGCTAGATTGCCAAGTTCGTCATCCTGAAGAGTTAGGCGGTCCAGCATGTCTCCCGCGCCGTCTACTCCCGCTTCACG
AGAACCACTTCCATCAATAGGACTCGCCATGGACGAGATCCGGAATATGACTATTCTGCCCAAAACCCTAGATCGTCCTC
GTCCAACCAAGGCCGGGAAGGCAGGCAAGCTACCCCCTGGATCAGCCCGAGAAGAGACAGAGGCCAATAGTGGATTCGGG
GCAGAGAAGAATGATAACTCACGGGAAGATCGCCGGAGGACTGGAGAACCCTAAGCCGCCGCCGCAGGGGAACAGGTAGA
GGCAAAACATAGGAGAGACGAGAGAGTAGAGCAGAGAGGGGTTTTTCGTAGAAAAAAATATTTTTCTAAATTGTAGATAC
CTCAAGCATGGACAGTTCCTCGAGTATGTAGGCACGGAATCGGCCCAAGGGCAAGAAGTGTTGTAGTGTTAATATTGAAA
CGGGCCAAGATATTCAATTAGATGACAATGAAGGTGATTAACGACAAAAAAATCGGTCACCAACCAAATCGGATGAAGCA
TGGACATGACACATGGGAGTGCACTGAGTAGGTGTGAGATAACCTACACGTACGTACATTTATGTTGATGAAGACATGGC
ATGACTAGATCTGTGTACCATGGATGCACACTCATCAATCAATCAGATGTACGAATGGTGGATACGCCAACGATCATCTC
CTATAAATAGGACCGGTCCACGCGATTCTTGTTTCACCACCAATCCACCATCACCACACATATCGATCCGTACGCCATGG
AAGCAGGCAAGGGTAGTCTCCGGGCTGTGATCCTCCTCCTGGGCGCGGTCCTCGTCGTAGGGAGCTTGGTGCCGCTGGCC
GAGGCAGATCCGACGGCCGCCGCCACCGGAGCTGCGGACGCCAAGTTCTGCTGCAAGGACAAGATAGGGAGCCACTGCTA
CGCCGCCTGCACTACGCAGTACGGCCCCACCCCGTTCTGCGCGGAGATGTGCTGCTGTGTGCAGCTTACGAGCGGCAGAT
GCCCGAGGCAATGCCCCACCCCGGCCGACCCCAGACTTTTTCTTGCCAACAGCTCCACCTTCGACCTTCTCACAACCAAC
GGTAAGCAAGCCACCACCAATCGAGCTCCGTGCATGTTAATTCTCG-----------TTACGTTCGTCCATGATTTGAAG
TTACAAGTAATATATCAACTCTCTTGTTTTTTTTTTCTTTTTGCCAGCCGTTGAGGTTGAGAGCTGCACGCTGAGGTGCT
CCTCCATCGTCTGTGACAGCATGCGCAACGGTAAAC-----AAATATTATCTCTGTCCTAAATTAATTGTCTTACATTTG
TTAAGATACATCGTGCCGGAAAGAGTAGATAGCTAGATAAAAGCTTCA-----------------TTGTAATTGA----A
TTGCGTCTAACGCGTCGTA------------CTGTATTTATGTTGTAGCACCAGTTATCGATGTCGGCAGCGTGGGGACG
AAAGCCGTCGTGGAGCGCTGCGGCGATGCATGCGGCCGCTTCTGTGCCGGGGCCGGCGGCGTTGCATCCCTTGATGCTTA
AT------------------------------------------------------------------------------
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>chr5A_857
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------------------------------------------------------------GTACC---ATGCACACTCAT
CAATCAATCAGATGTACGAACGGTGGATGCGCCACCGATCATCTTCTATAAATAGGACCGATCCACACGATTCTTGTTTC
ACCACCATCACCACACAACACATACCGATCATCCAAGTTTGAGCTGCACGTACGTACGCCATGGAAGGCAAGGGTGGTCT
CCGGGCTGTGATCCTCCTCCTGGGCGCGGTCCTCGTCATAGGGAGCAT--------------------------------
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-------------------------------------------------------------------GGTGCCGCTGGCC
CAGGCAGATCCGACGGCCGCCGCCACCGGAGCTGCGGACGCCAAGTTCTGCTGCAAGGACAAGATAGGGAGCCACTGCTA
CGCCGCCTGCACCACGCAGTACGGCCCCATCCCGTTCTGCGCGGAGATGTGCTGCTGTGTGCAGCTTACGAGCGGCAGAT
GCCCGAGGCAATGCCCTACCCCGGCCGACCCCAGACTTTTTCTTGCGGATAGCTCCGCCTCCGACCTTCTCACGAGCAAC
GGTAAGCAAGCTACCACCAATCGAGCTCCATGCATGTTAATTTTTCTCGTTACGTACTTACGTTCAGCCATGTTTTCAAG
TTACAAGTAATAC--CAACTCTCTTGTTTTCC----CTTTTTGCCAGCCGTTGAGGTCGAGAGCTGCACGCTGAGGTGCT
CGTCCATCGTCTGTCACAGCATGCGCAACGGTAAACAAAACAAATATTACCTCCGTCCCGAATTAGTTGTGTTATATTTG
TCTAGATACATCGTGATGGAGAGAGTAGATATATAGATAAAAGCTTCA-----------------TTGTAATTGA----A
TTGCGTCTAACGCG-CGTACTGTATCTGTATCTGTATGTATGTTCTGGCACCAGTTGTGGATGGCGGCAGCGAGGGGACG
AAAGCCGTCGTGGAGCG---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S-S------------SS---
---------S---S-----S---------S--------------------------------------------------
------------S-S------S------------------------------------S---------------------
----------------------------------S------------------------S--------------------
-S--------------S----------------------------------------S----------S---S-------
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--------------------------S-----------------------------------------------------
-----------S------------------------------S--S----------------------------------
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-----------------------------S-------------S------------------S------------S----
---SSSSSSS-------S--------------------------------------------------------------
----------------------------S------S---SSSSSSS-SS-------------------------------
--------------------------------SS-S-S---SS-S--SSSSSSSSSSSSSSSSSS--------S-SSSS-
-------------S------------------------------------------------------------------
--------------------------------------------------S----------S------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_101
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-CCAGTTGTTCCGTTGTGCAG-----------------------------------------------------------
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>reverse_3404
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-------------------------------------------TCCACCGTATGATGGCATGG-----------------
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