>input_sequence_70823
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------------------------------------------------------------------------------AT
GTCCAACGCCGCCACGGGCGCCGGCCGCAACAACGGCGACGGCGAGCAT---------CCCAATGGCGGTCACCCGCACT
ACCACCACCGGCAGCGGGAGCACCACTGGCGGCCCCCGCACCCGCACAGCAGCAGGGCGTACCGCTCGGGCGTGCTGCGG
TGGGCGATGGCGGTGCTGTTCACGGTGCTGGCCGTGCTAGTCCTGCTGGCGGCCGTCTCCGTGCTGCTGGTGGTGCTGGT
GCTGCAGCCCCGGGCGCCGTACCTGGCCGTGCAGAATGCGCGGCTGGGGAACCTGGTGTACGACCAGCAGGGGGTGCTGG
ACAACGCGGAGCTGGAGCTGGACGTGCGCGCCGCCAACGTCAACGCCCACGCCGCCGTGGCCTTCTCGGAGCTCGAGCTG
CGGCTGAGCTTCCACGACATGGTGATCGCCATCCTGCGCGCCGACCCCTTCGTGGTGCCGCCCAGGGGCGAGCGCCCGCT
GGGCTACGTGGCGTCCTCGGAGGCGGTGCCGCTGGACGGCGCCGGGCGCGCCGCCATGGAGGGCGCGCTGGACCGCGGCG
TGGTGCCGTTCCGGGTGAGCGGGCAGGCGCGGACGCGGTGGAAGGTGGGCGGGCTGGTGGCCGTCAAGTACTGGACGCGG
CTGGCATGCCAGATCCGCTTCTTCTGGCCCAACGGCACAGCGCTCGACTTCACCTGCAACTCCAAGTCCAGGTCCCGCTA
CTGA----------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G382800
AGATTATCCACGGTACCCCGGTCTGCAGTGTCAGCTGCAGTGTTTCACGCTACATCACTCAATCTGAGCCGCCCCCTGCA
TCCATCGGCTGCCCGCCCGCCAGTTACGCCGTGCCTTGTTGTGGGCAAGGCACTGGATCTCTGTCCTGCCTGGACATGTC
TCCGCCACTGAGTACAGAGAAACACAACATTCAGTATCTCTGATCATCTACAACATTCCTCAGGCCTCTGAATTCTCTGA
AAAAAGATGAATGTTGATCGGTCCCAAAAAAGAGAAGAAGATGAAAGCTGATCCAGTATATGCGCGCCCCCATAGTTTGA
T-AAATCACAAGTGCGAGCACTGAAAAGGGGTTCACTCG----ACCCAACAGCCTTAGCTTAAAGGAACTAAAAGGAAGA
GAAAGATAGAGGCATCTGGTGCTTTGCCATGATGGAATTGAGTGCTTGGGAATGGCTTTAGCGTTCCAGCTCACTGCACA
GCTTATCTAT-------CAGCAGTGACTGACATCGAC-----GACGGTGAGGCACATGGTCGTCTG----AAGTTTTGAA
CCTGGAGCCGCGCTTGCCAACGCTTGGACAGCCACAAAAGTGTATCAATGGTGTCCCGCGATTTATCATTGTCGCAGAAA
GCAGCACCATAG---CATAGCAGTGCCGATTACGATGTGGTAGCCCAGGATGAGATCTCTCCCTTGCTTTCAGCTGGTTT
AGCCGAGAGCCAAAGCTTTGTCCAGGCATCG----------CATCAGGAGGATGCTTCCTGAATCACACTTGCTAGTAGG
AGTACTAGT-----------------------------------------------------------------------
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-------------------------------------------------------------------------TGCTGCG
TACGAGAGAGGTTGCACGGGGA--GGGACAGGGGGATACCAAACCTTTGCCCGGCGTTGTGCTCCACCTCCACCTCCACC
TCCACCGAGAAGAGA---------------GCAAGTCCTCCTTGGTGGGGCAACGTTGCCGCCGGCCGACGCACAGACAA
ATAAGGCCGTCGCAGTCGCCTCGCCTCGCCCCACCTGATGCTGTTGCTTCTCTGCAGCGGCGTCTCCCGAGCCC---GAT
GTCCAACGCCGCCACGGGCGCCGGCCGCAACAACGGCGACGGCGAGCAT---------CCCAATGGCGGTCACCCGCACT
ACCACCACCGGCAGCGGGAGCACCACTGGCGGCCCCCGCACCCGCACAGCAGCAGGGCGTACCGCTCGGGCGTGCTGCGG
TGGGCGATGGCGGTGCTGTTCACGGTGCTGGCCGTGCTAGTCCTGCTGGCGGCCGTCTCCGTGCTGCTGGTGGTGCTGGT
GCTGCAGCCCCGGGCGCCGTACCTGGCCGTGCAGAATGCGCGGCTGGGGAACCTGGTGTACGACCAGCAGGGGGTGCTGG
ACAACGCGGAGCTGGAGCTGGACGTGCGCGCCGCCAACGTCAACGCCCACGCCGCCGTGGCCTTCTCGGAGCTCGAGCTG
CGGCTGAGCTTCCACGACATGGTGATCGCCATCCTGCGCGCCGACCCCTTCGTGGTGCCGCCCAGGGGCGAGCGCCCGCT
GGGCTACGTGGCGTCCTCGGAGGCGGTGCCGCTGGACGGCGCCGGGCGCGCCGCCATGGAGGGCGCGCTGGACCGCGGCG
TGGTGCCGTTCCGGGTGAGCGGGCAGGCGCGGACGCGGTGGAAGGTGGGCGGGCTGGTGGCCGTCAAGTACTGGACGCGG
CTGGCATGCCAGATCCGCTTCTTCTGGCCCAACGGCACAGCGCTCGACTTCACCTGCAACTCCAAGTCCAGGTCCCGCTA
CTGACATCTCCACATCGCCGTCAGAAGA---GAAGAGCTAGCTCCTCTCTCCCCG---------GTCCAATCCAATCCAA
ATG-----------------------------------------------GCCACTAC-CTTTCTTGGCTTTGCTTACTA
AT-----ATATTTTCCGCATGTATGTACTGCATATATTCGAAAACTATAAAGAAATATATTTGTACAATTATTTGGTGAC
GTACCTTAAGTTTCACTAGCAAACATGCCCGTCGCAACGGGAAAC--------TTTTCGCATGTTTCTAGCATAATAAGC
ATGACTCAAGACTCCCCAATGATTTCATGTTATGTGTTTGAATATAGCGCCCCATCATGTTGTGCCTTATCCTCCCTCCT
GACTTCCTTGACCATGGTCGTCAGGTCCACCTGATCGCAATGCATTCAACATGGTCATAGGACAGAAGTGACATTGAACC
ACACCATCGCAGGTCAACGTCTAATAGTTTTAAAACTAATCCCGTTGAGTTGGACGTGACGGCTGCCTTTTCCGAGCTCA
ACCTACGTTTAGTCCATACACCATCCCTTATACACCCACTCACTTTTAAATTGTATATAGTGTTTTTCGAAATGCATCAA
CCTTCTTTTAAAACACAAAGACT-TTAAAATAATGATATAAACATTTATTTTAATACATGAACATTTTTCTTAAAACTAC
ACAAACAATTTTAAATTCATGATCAA-TTTTACATATTACATATTATTTTTGAAAAGGCACAAAAATGGAAAACGCGTCA
ACATTTTTTATGAAATCTGATTTAGAGCATTTTCAATAGATGGTCTAAATTTTGCCAGTCCAAAACCGCAGATGTAAAAT
TTAGACCATCAAAAAATGCGTTTTGAAGCTCCGAAAAAAGGTCAACTCCAACAGATGGTCCAAATTGATGGTCCAAAAAA
GCAACTCCAATAGATGGTCCAAATTCATGGGCCAAAACCGGTCATCAGCCGCGGGGAATTCCGTCGAACACCTTGTGCGT
GCGGTGGAAGAAGATGGCCGCCAGTTGGATTGGTTGCTG
>chr7D_237
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----------------------------------------------------------------------------CTGA
GAAAAGATGAATGTTGATCAGTCCCCAAAAA-AGAAGAAGATGAAAGCTGATCCAGTATATGCGCGCCCCCATTGTTTGA
T-AAATCACAAGTGCGAGCACTGAAAAGGGCCGGGGCTCACTCACCCTACACCCTTAGCTTAAAGGAACTAAAAGGAGGA
GAAAGATGGGGGCATCTGGTGCTTTGCCATGATGGAATTGAGTGCCGAGCAATGGCTTTAGCGTTCCAGCTCACTGCACA
GCTTATCTAT-------CATCAGTGACTGGCAGTGACACTGTGACAGTGCGGCACATGCATGGTCACCTAAAGTTTTGAA
CCTGGAGCCGCGCTTGCTAACGCTTGGAAAGCCACA----------ATGGGTGATA---GATTTATCGGTGTCGCAGAAA
GCAGCACCATAG---CAGCAGAGCT--------GATGAGGTAGCCCAGGATGAGATTTCTCCCTTGCTTTGAGCTGGTTT
AGCCGAGAGCCAAAGCTTTGTCCAGGCATCG----------CATCAGGAGGATGCTTCCTGAATCACACTTGCTACTTGC
--TAGGAGTGCTAGCTAGTTAGAGCATCTTCAGCCGCGCCCCCAGAAAGGTCTCCCCAGACGATTTTTCACACCAGCGCC
GAAAAATCGGTCCAGTCGTGCCCCCAGGAACCCGATTTTCGCCAGCCTGGGCCGAAATTAGCGCCGGCGGACCCAGGCCG
AACCCGGCGCGCTGGGGCGCCGGCGCGAGTGGTTTTGGCATGAAAGAGCCGCGGGCCCGGCGCGTCAGCGACACCGCGCG
TCGTCTTCCCCCCAACGCCTCGGTTTCCCGCGGGAAATCAATGGCAAGGCTGCCGCCGGTCAGCCTTACCATTGATTCCT
CACGGGCGGCGCGCCGACGACTCCCCTCCCTCGCACGCGTACACACGGGCGCGGCGCGGCTATATAAGCCGGTGGCCTCC
CTCACCTCTGGCCACACCAGCCCTAGCCCTAGCCGCCGAGCTCTACCTCTCCCGAGCGCCGCCGTCGAGCCCCCCTCTCC
CGAGCGCCGCCGTCGAGCCCTCCCTCTCCCTCCCTCCCTCTCCCGATGGCCGAGCGATTCCCCGAAGATGAGGCGGCGGC
CAACGGCTTCGGCCGCCGCTCGCTCCGCGAACAGGAGTCTTGGCTCCTGTTCCAGGCGAACATCCCGGCGCCGCCGGACA
TGCGCGCCGGGCCGACGGGGTGGAGACTCAGCAACGGGGGAGTGCCCATTCCCCCATTGCCCGACGCCGTGGCGAAACCG
TCCTACTTCGCCGACGAGGTTGAGGTCGTGCGCGCCTCCCTCACCGACGCCCAACTCGCCCTCCCCGAGTACGCCGCCGA
CAACCAAGCGGCGTGGACGGCATACTTTCAGCGCCGGCAACAGCAGAGGATGGCGTCCACCAACGGCGCGAAGAACAGCG
AGGGACGCCACCTGTGGTGGGGTGTCCCCGGCCGCACCCTCGAGGGCGTTTTGACGTATCTCGAGGGCGGCAACGACCCG
CCGTTGGCATACCCCCCGGTGAGGGCGGCAGCCACGGCCACGGCTCACTGCCGACGCGACGGGCAATGGTTGCCCGGGAG
GTTCGGCGCCTCCTCTTCTTCCTCCTCCTCGCGCTCTTCCTCGCACTCCTCCGGCACTCCGGCGCTGCTCGGCGTCAAGA
CCGAGCCCGCGGCGGAGACGCCGCTCGGCCGGCGCACTCGCAGCGCCGGCATCGTCATCAACAAGGGCGGCCGGCGCGCC
TCCTCGTCGGCTCCTCCGCGCTTCGTGAAGCCCAAGACGGAGCCGGGGCTGGCACCGGTGAAGACGGAGCCGGGCCTCCC
CGCGGTGAAGACGGAGCACGGCGGCGACGTCGAGCTCGACGATGACGCGACCCTGGAATGGGCGCGCGCGGACTCCCTGA
AGATGGCGAGGGAGCGCCAGTGCGCCGCCCTGCGGTGATTCGCGCAGCGCCGCCGGGGCTGCGACGAAGGAGGAGTCGTC
GTCATCGAGGATAGCGATGACGACGACGCGCCGCCGCCATCAGTTTGCGTTGGCGACGCCGGTCAGGGGTCCACCAGGAC
GGCCGCGTCAAGGAGGAGAAGCCCGACGACGACGACGGCGGCGAGGATGGCGGCGACGACGGCGACTACTCCGGTGTTTA
GCCAGTTTCTTTTTTAATTAGATATATTATGTAATAAAAATCCGCGACTATTATGTAATATATGCCGAACTTCGCCGAAC
TTTGCTATATTTTTGCCTTTTTTAAACGCGCCTGGGGCGGTCCTGGCCGGGCGGCTGGGGACCAACTCGTCCCAGGGCCA
TTTTTTGCGCCGGCTCATCTCAGGCGGCGATTTTAGGCGTCCCTGTGGGGCCAACGGCCGGAGATGCTCTTACTGCTGCG
TATGAGGGAGGTTGCACGGGGA--GGGACAGGGGGATACCAAACCTTTGCCCGGCGTGGTGCTCCACCTCCACCTCCACC
AACAA-GAGAAGAGA---------------GCAAGTCCTCCTTGGTGGGGCAACGTTGCCGCCGGCCGACGCACAGACAA
ATAAGGCCGTCGCAGTCGCCTCGCCTCGCCTCACCTGATGCTGCTGTTTCTTTGCAGCGGCGTCTCCCGATCCC---GAT
GTCCAA---CGCCACGGGCGCAGGCCGCAAC---GGCGACGGCGAGCATAATGGCGGACCCAATGGCGGCCACCCGCACT
ACCACCACCGGCAGCGGCAGCACCACTGGCGGCCCCCGCACCCGCACAGCAGCAGGGCGTACCGGTCGGGCGTGCTGCGG
TGGGCGATGGCGGTGGTGTTCACGGTGCTGGCCGTGCTAGTCCTGCTGGCGGCCGTGTCGGTGCTCCTGGTGGTGCTGGT
GCTGCAGCCGAGGGCGCCGTACCTGGCGGTGCAGACGGCGCGGCTGGGGAACCTGGTGTACGACCAGCAGGGGGTGCTGG
ACAACGCGGAGCTGGAGCTGGACGTGCGGGCCGCGAACGTGAACGCCCACGCCGCCGTGGGCTTCTCGGAGCTGGAGCTG
CGGCTGAGCTTCCACGACATGGTGATCGCGATCCTCCGCGCCGACCCCTTCGTGGTGCCGCCCAAGGGCGAGCGGCCGCT
GGGCTACGTGGCGTCGTCGGCGGCCGTGCCGCTCGACGGCGCCGGGCGCGCCGCCATGGAGGGCGCGCTGAACCGCGGCG
TGGTGCCGTTCCGGGTGAGCGGGCAGGCGCGGACGCGGTGGAAGGTGGGCGGGGTGGTGGCCGTCAAGTACTGGACGCGG
CTGGCATGCCAGATCCGCTTCTTCTGGCCCAACGGCACCGCGCTCGACTTCACCTGCAACTCCAAGTCCAGGTCCCGCTA
CTGAC--------ATCGCCGTCAGAAGA---GAAGAGCTAGCTCCTCTCTCCCC---------AGTCCAATCGAATCCAG
ATCCATGCGATTTGGGATTTGGGTGTGGGCACTTGATCAAGAACAAGACAGCCACTAC-CTTTCTTGGCTTTGCTTACTA
ATGGAATATATTTTCCTCATGTACGTACTACATATATTGGAAAACTATAAAGAAATATATTTGTACAATTATTTGGTGAC
GTGCCTTTAGTTTCATTAGCAAACATGTCTGTGCGTTGCAACAGAAGGAATTTTTTTCACAAGTTCCTAGCATAATAAGC
ACGACCAAAGACTCCTCAATGGTTCCATGTTATCTGTTTGAG-------------CATGTTGTCGCTTGTCCTCCTTCCT
GCCTTCCTCGACCATGGTCATCGGGTCCACCTGATTGCAGTGCATTCAATGTGATCATGGGACAAACCTGACATTGAACC
ACGCCATCGCAAGTCAACACCTAATAA-TTTAAAACTAATCTCGTTGAGATAGTTGTGACG-CTGCCTTTTCCGACCTCA
ACCTACGTTTACCCCATACACCGTCCCTTGTACACCCACTCACTTTCAAATTGTACATAGTGTTTTTCGAAATGAATCAA
CCTTCTTTTAAAACACAAAGACTTTTTAAATGATGATATAAACAA-TATTTTAATATGTGAACATTTTTCTTAAAAGTAC
A-AAACAATTCTAAATGCATGATCGCTTTTTAAATATTACATAATATTTTTTAA-AGGCACAAAAAAGGAAAACACGTGA
ACACTTTTTATGAAAACTG-------------------------------------------------------------
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>chr7A_241
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AAAAAGATGAATGCTGATCAGTCCCCAAAAA---AAGAAGATGAAAGCTGATCCAGTATATGCCCCATG-CATTGTTTGA
TAAAATCACAAGTGCGAGCACTGAAAAGGGCCGGGGCTCACTCACCCAACAGCCTTAGCTTAAAGGAACTAAAAGGAGGA
GAAAGATGGAAGCATCTGGTGCTTTGCCATGATGGAATTGAGTGCTTGGCAATGGCTTTAGCGTTCCAGCTCACTGCACA
GCTTCTCTATCATCACTCATCAGTGACTGACATTGAC-----GACGGTGAGGCACATGCATGGTTACCTCAAGTTTTGAA
CCTGGAGCGGTGCTTGCCAACGCTTGGACAGCCACA----------AAGGGCGTGCCGCGATTTATCCTTGTCGCAGAAA
GCAGCAGTGCAGCACCATAGCGGTGCCGATGAGGATGAGGTAGCCCAGGATGAGATTTCTCCCTTGCTTTCAGCTGGTTT
AGCTGAGAGCCAAAGCTTTGTCCAGGCATCGCATCGCATCGCATCAGGAGGATGCTTCCTGAATCACACTTGCTACTTGC
--TAGTACT-----------------------------------------------------------------------
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-------------------------------------------------------------------------TGCTGCG
TGTGAGG-AGGTTGCACTTGCACGGGGACAGGGGGATACCAAACCTTTGCCCGGTGTGGTGCTC------CACCTCCACC
AAGAA-GAGAAGAGAAGAGAAGAGAAGAGAGCAAGTCCTCCTTGGTGGGGCAACGTTGCCGCCGGCCGACGC----ACAA
ATAAGGCCGTCGCATTCGCCTCGCCTCGCCCCACCTGA---TGCTGTTTCTTTGCAGCGGCGGCGGTAGCATTAGCAGAT
GTCCAACGCCGCCACGGGCGCCGGCCGCAAC---TACGACGGCGAGCACAATGGTCCTCCCACCGCCAGCGGCTAC----
-----------CAGCGGCGGCACCACTGGCGGCCCCCGCACCCGCACAGCAGCAGGGCGTACCGGTCGGGCGTGCTCCGG
TGGGCGATGGCGGTGGTGTTCACGGTGCTGGCCGTGCTAGTGCTGGTGGCGGCCGTCTCCGTGCTGCTGGTGGTGCTGGT
GCTGCAGCCCCGGGCGCCGTACCTGGCCGTGCAGACGGCGCGGCTGGGGAACCTGGTGTACGACCAGCAGGGGGTGCTGG
ACAACGCGGAGCTGGAGCTGGACGTGCGCGCGGCGAACGTGAACGCCCACGCCGCCGTGGCCTTCTCGGAGCTGGAGCTG
CGGCTGAGCTTCCACGACATGGTGATCGCCATCCTGCGCGCCGACCCCTTCGTGGTGCCGCCCAGGGGCGAGCGGCCGCT
GGGGTACGTGGCGTCGTCGGCGGCGGTGCCGCTGGACGGCGCCGGGCGGGCCGCCATGGAGGGCGCGCTGGACCGCGGCG
TGGTGCCGTTCCGGGTGAGCGGGCAGGCACGGACGCGGTGGAAGGTGGGCGGGGTGGTGGCCGTCAAGTACTGGACGCGG
CTGGCATGCCAGATCCGCTTCTTCTGGCCCAACGGCACCGCGCTCGACTTCACCTGCAACTCCAAGTCCAGGTCCCGCTA
CTGACGAACGTCGCCGCATCGATCTCAGATCGAAGAGCTAGCTCCTCCTTTCTCTCCCCCAGTAGTCCAATCGAATCCAA
ATCCATGGGATTTTCTGG------GTGTGGACTAGATCAAGAACAAGACAGCCACTAAGCTTTCTTGGCTTTGCTTACTA
ATGGAATATATTTTCCTCATGTATGTACTGCATATATTGGAAAACC--AAAGAAATATATTTGTACAATTATTTGGTGAC
GTGCCTTTTGTTTCA-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-------------------S-----S-----S-----------------------------------------S------
------------------------------SSSSSSSSS--------------------------------------S--
-------S-----------------------------------------S------------------------------
-------------------S-------------S------------------------SSS-SS-S--------------
------------------------------------SSSSSSSSSS--S-----S------------S------------
------------------------------S-S----S------------------S-----------------------
---------------------------------------------------------------------------S-S-S
SS--S---------------------------------------------------------------------------
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--S---S--------------------------------------------------S----------------------
SS--SS--------------------------------------------------------------------------
-------------------------------------------S--S----S------------------S---------
-------------------------------SSS-----------------------------------S----------
-----------------S----------------------------------------------S---------------
---------------S----------------------------------------------------------------
-----------------------------------SS-------------------------------------------
----------------------------------S-----S--------------------------------S------
--------------------------------------------------------------------------S-----
---------------S----S-----------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------S-----------------------------------------
-----SSSSSSSS-----------------------------------------S-----------------S-------
--S-----------------------------------------------------------------------------
----------------S---------------------S-----------------------------------------
--S----S-------S-----------S-S--SSSSSSSSSS-SS-------------S--S---S--------------
-S---SS--------S-----S--S--------S-------SSSSSSSSSSSSSS--------SS---S------S----
-S------S----------S--S------------S---S---------SS--S----S-----S-SS------------
--S--------S------SS------SS-------------S-------S-S-SS------S-------------S----
-----------SS---------S------S----------------S--------S------------------S-----
--------------------------S----S------------SS----------SS------------------S---
-S--------S-----S-------SS------S----------S-------S--S-----------S-------S---S-
---S-----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_144
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--------------------------------------------GCAAGGCACTGGATCTCTGT----------------
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>reverse_3611
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----------CACATCGCCGTCAGAAGAGA--------------------------------------------------
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