>input_sequence_70822
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-----------------------------------------------------------------ATGTACCCACACCGC
CCTACCGGCGAGTACCGGCTGTTACTGCAACAGAGGAAC------------------------AACACTGACTCGTCTAG
ACATCAAACTGGCCGCTGCTATGTCTTTGCGCTGGGCTCCCACCAGCCACGGAGGTATGTCGGGTG---CTCGGAGATCA
AATTAGCATT------CTTAGA------TGTAGCTGTCCGGCTACGTGATAGCCTGCACTGGTACCCGGTGCTGTATGAG
A---------CTGAAAGC---------AGGCCATGGGAGTA---TGTGGGTAAAAGCGAAC---TGATAATCGTATTCGA
CACCACAACTGAGTCGTTTCGGCAGATGCGTGCTCCACCTGTCC------CCACCAGCTCACGTATCTGTGAGATGGATG
ACACGCTTGGCATCTATAGCTGTAACTGGG------CCATGGAAACTGTCGATATATGGGTGCTGCACAACTACGAAAGT
GAGGTTTGGGATTTGAAGTACCGGGTTCAATTGCCAG---------TCGCACAAATCTGGGGGAACCTTGAAGGCATTGT
TGGTACTCTAGCCTATTGGCATGTGACCGTTGCTTTGAGTGATGGCGACGTGCTCTTGCTGGTCAGA-------------
--CTTGGGC---------GTTCGCTGTTTTACGTTGACACTGATGGCAAGCTGATTGCTATTTTCCG------------A
GACATCTCAGCCTATAAACATTGGCTCAAACAAACTCTTGTACCTCATGATTTCTTCATGACACTAGACGGTTATGCTGC
GGACGCT-------TCGCCTTTCATC---------TGA------------------------------------------
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>chr3D_1_TraesCS3D01G465300
AACCCTCGGCGGACGACGATGACAAGGCTAGCTCCCTTGGAGGCTTTGCAAGAATTTAAACTTGTACAAGTAATTCAATG
CAAGGGTGGGAATGGGAGAAAGAGTAGCTGAAGCTTGGAACGTATTGTAGGCCAGACAAAGCAGTTGAGTGAGTGTTGAG
AGTAGAATTCATTTACTTTAAGTCTGGTAGTACGCTCTTCCTATTCTCTTTTTGTAGGTGGCATATCAGAACAAACTTCA
TACAAATTCACATTTTTTTTAGTAGTCGTCACAATTTTGTTGGTGGCAACATCGTCACAATATTGAAATTTTGTTTTATT
ATTACGGCACAATATTGAAATTTATTTGTTTAGCGTAATATTGAAATTTGATACTACAGG-ACATTCTCAAGTATGGAAA
ACTTTGTTCTTGTGGGCTTAGCCCAGCCCGTTTGAGAGCTATGTACACTTAAT----AGCCCAGACCAGAGTTCTATACG
CTCATCTCCAATTCC--------------------------------CCATTCCACCGAAACACCGATTGACCACCGCCG
CCGCCACCAGCACCACTCC-------CAGCCGCAGCCGGCGACCATG------------GCGGCAGCAGCAGCGACTCCT
CTCCTCCACAACCTCCCAGATGAGATCGTCCTCTGGGAGATCCTCATCCGCCTCGACCCCATATCCCTCCTCCGCTGCCG
CGCCGTCCGCCGCGCCTGGCGCTGCGCCACCTCCACCCGCCGCTTCCTCCTTGTCCACCACGCCCGCCAGCCCGCCAGCC
CGCCCTCCCCATCGTTCA------------------CGGCAACGGGTACCGTAGCATCCTCGCCATAGACATTCGGGC--
----------TGCCCAGCTCCACACCGTCGCCTGGCTTGA------CGGGGTCTTCGTTGTGGAGGCCTCCTGCGATGGC
CTCCTCGTCCTCTCCAAGTATGACTACGCTGG---T------------G-------------------------------
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-----------------------------------------GCTCTCGCACCTGCCTCTCCGTTTGCAACCCAGCAACGC
GTGACTTCAAATTGGTGTCCCCCGGGCCCG---AGCCACTGCC---GGACTTGAGGATCTTGGGGATGTACCCACACCGC
CCTACCGGCGAGTACCGGCTGTTACTGCAACAGAGGAAC------------------------AACACTGACTCGTCTAG
ACATCAAACTGGCCGCTGCTATGTCTTTGCGCTGGGCTCCCACCAGCCACGGAGGTATGTCGGGTG---CTCGGAGATCA
AATTAGCATT------CTTAGA------TGTAGCTGTCCGGCTACGTGATAGCCTGCACTGGTACCCGGTGCTGTATGAG
A---------CTGAAAGC---------AGGCCATGGGAGTA---TGTGGGTAAAAGCGAAC---TGATAATCGTATTCGA
CACCACAACTGAGTCGTTTCGGCAGATGCGTGCTCCACCTGTCC------CCACCAGCTCACGTATCTGTGAGATGGATG
ACACGCTTGGCATCTATAGCTGTAACTGGG------CCATGGAAACTGTCGATATATGGGTGCTGCACAACTACGAAAGT
GAGGTTTGGGATTTGAAGTACCGGGTTCAATTGCCAG---------TCGCACAAATCTGGGGGAACCTTGAAGGCATTGT
TGGTACTCTAGCCTATTGGCATGTGACCGTTGCTTTGAGTGATGGCGACGTGCTCTTGCTGGTCAGA-------------
--CTTGGGC---------GTTCGCTGTTTTACGTTGACACTGATGGCAAGCTGATTGCTATTTTCCG------------A
GACATCTCAGCCTATAAACATTGGCTCAAACAAACTCTTGTACCTCATGATTTCTTCATGACACTAGACGGTTATGCTGC
GGACGCT-------TCGCCTTTCATC---------TGATGGCTATTGAGTGAGGAGGTGCTTCTTAACGGCCTAGTCTTC
ATATCCTCATGAGCTGCAATGTCTACGAGTTGGATCAAGCATGAGCATGCTGAT---TTCTTCTTTTTGTGTTGATGTA-
TGATGTATAATAAATTATGACCAGAAGTGACTGTTATGTGGTTGCATGATATCTATGCCT---------TTTTTTATACC
CTTTT------GGGCT----GAAGTGACTACTGCTTGTGTTAATGCTAAAATTACCAAGCCATTTTGCTCTGCTTTTGAG
GTGAATTATCCTTTTGGGCTCAATGGCTACCATGCATGCTGATACTAAAATAACCAAGTCATTTTCCTCAGCATTTGAAA
TAGTTGCCAATTGATCTGCCTTGTGTCCCTGTTTTGCTTTGAACTGAAGAGTTGGCTTTGTTTATTTTTTAGAAGTCTTC
TTATTTATTAAAGATCATCCAGTTCTTTTGAATACTCTGGTTTCCTGTTTTGAAGTTCTGTTGTAGCCGATGATAAAATT
AGAGCACATTAAACCCTTTGTTGACTAGCAAGTTGGACTTGATTTGTGGAAGAGCTTGGAGCACTGCTCATTGAATTATG
GCCAACTTCCCGGT----------------------GAAATGGTCTCTTGCAATTCATTTTTCTTCATGTATCCATTGCA
TCAGGTTAGATATTGGATTTTCAGTTATAGTTCTGGCTTTGTTGTTGCATCTTTTGATGTTATCTCAATCATGGTCATGC
TGGTGTTCCCCTCGAGACACAGCCATGCTCCTTTCTTCTCTATAACCATTGGTCGAAATCAGATTGTCTCGAGCAGAAGT
AGGACA--------------------------------------------------------------------------
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------------------------------------------TCACCAGGAATTGTGTCTCTGATCATTTTTTACTGGAC
CATTACAGGGCAATTGCTCAGCTGCTCACATCACTAGGAGGCTACATATGTTCAGTTTTCTGTGGCACTCGTGC------
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-------------------TCTTTTGGGGTATATGTGCGAGAACTTAAACATGTGTTTTGCGGGGGTGGGGGTTCATCGA
CCAGAAACTGGCGACAAATACCTT----------------------------------------
>chr3A_361
TTTAAATG------------------------------------------------------------------------
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-----------------------------------------------TTGATATCACAGGCACATTCTTAATTGTGGAC-
ACTTTGTGCTTGTGGGCTAAGCCCAGCCCGTTTGAGAGCTACACTTTACTATTCCACAGCCCAGACCAGAGTTCTATCCG
CTCATCTCCAATTCCCTGTTTCTCAAAAAAAAAAAATCTCCAATTCTCCATTCCACCGAAACACCGACC-ACCACCGCCG
CCGCCACC------------------------CAGCCGGCAACCATG------------GCGGCAGCAGCAGAGACTCCT
CTCCTCCACAACCTCCCAGACGAGATCGTCCTATGGGAGATCCTCATCCGCCTCGACCCCATATCCCTCCTCCTCT----
--------GCCGCGCCTGGCACTGCGCCACCTCCACCCGCCGCTTCCTCCTCTCCCACCACGACCGCCAGCCCGCC----
----CTCCCCATCGTCCAC------------------GGCGACGAGTACCGTAACATCCTCGCCATAGACACTCAGGCG-
----------------GCTCCACACCGTCGCCTGGCTTGA------TGGGGTCTTCGTTGTGGAGGCCTCCTGCGATGGC
CTCCTTGTCGTCTCCAAGTTTGATTACACTGG---T------------GCGTGTTTTGATTTTTGGTTTGAGCTTTTTTT
CGCCCTAGGCCGAAATGGCCGAATATCGGCCATTTTCAAAATTTTCGGCTGAAATTTGACCAAATTTTGACTGCAAGTTG
ACATAAATTTAACCAAAATTTGCCAAATTTAAGTAATTTCGGCCTAAATATACTTTTCGCCTCACGCCGAGATGGCCGAA
ATTCGGCCGAAATCCACTTTTTGCAGCCGAAAATCAAAACACCTCTCGCACCTGCCTCTCCGTTTGCAACCCAGCCACGC
GTGACTTCAAATCGGTGTCCCCCGGGCCCG---ACCCACTGCC---GGGCTTGAGGAT----------------------
CCTACCGGCGAGTACCGGCTGCTACTGCAACATAGGAAC------------------------AACACTAACTCGTCTAA
ACACCAAACTGGCCGCTGCTATGTCTTTGCGCTGGGCTCCCACCAGCCACGGAGGTATGTCGGGTG---CTCGGAGACCA
AATTAGCATT------CTTCGA------TGTAGCTGTCCGGCTACGTGATAGCCTGCATTGGTACCCCGTGCTGTATGAG
A---------CTGAAAGC---------AGGCCATGGGAGTA---TGTGGGTAAAAGCAAAC---TCATAATCGTATTCGA
CACCACAACTGAGTCGTTTCATCAGATGCGTGCTCCACCCGTCC------CCACCAGCTCACGTATCTGTGAGATGGATG
ACACGCTTGGCATCAATAGCTGTAACTGGG------CCATGGAAACTGTTGATATATGGGTGCTGCACAACTACGAAAGT
GAGGTTTGGGATTTGAAGTACCGGGTTCAATTGCCAG---------TCGCACAAATCTGGGGGAACCTTGAAGGCATTGT
TGGTACTCTAGCCTATTGGCATGTGACCGTTGCTTTGAGTGATGGCGACGTGCTCTTGCTGGTCAGA-------------
--CTTGGGC---------GTTCGCTGTTTTACGTTGACACTGATGGCAAGCTGATTGCTATTTTCCG------------A
GACATCTCAGCCTATAAACATCGGCTCAAACAAACTCTTGTGCCTCATGATTTCTTCATGACACTAGACGGTTATGCTGC
GGACGCT-------TCGCCTTTCATC---------TGATGGCTATTGAGTGAGGAGGTGCTTCTTAATGGCCTAGTCTTC
ATATCCTCATCAGCTGCAATGTCTACGAGTTGGATCAAGCATGAGCATGCTGAT---TTCTTATTTTTGTGTTGATGTA-
TGATGTATAATAAATTATGATCAGAAGTGACTGTTATGTGGTTGCATGAAATCCATTCCT---------T-TTTTATACC
CTTTT------AGGCT----GAAGCAACTACTGCTTGTGTTAATGCTAAAATTACCAAGCCATTTTGCACTGTTTTTG--
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>chr3D_518
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--------------------------------------------------------------------------CCGCCG
CCGCCTACTACCACAACTCGCAGCCGCAGCCG------GCGACCATGGCGGAGGAGGCTGCGGCAGCAGCAGCGGCGCCT
CTCCTCGAGGGCCTCCCAGATGAGATCGTCCTGTGGGAGATCCTCGTCCGCCTCGACCCCAAATCCCTCCTCCGCTGCCG
CGCCGTCCGCCGCGCCTGGCGCTGCGCCACCTCCACCCGCCGCTTCCTCCTTGCCCACCACGCCCGCCAATCCGCC----
----CTCCCCATTTTCTCC------------------AGCGACGGATGCCGTAACCTCCTCGCCTTGGACCACCGGGC--
----------CGCCCAGCTCCACACCGTCGCCCGGCATGA------CGAGCCCTTCTTTCTGGAGGCTTCCTGCGATGGC
CTCCTTCTATCCAGGTCTTAT-----------------------------------------------------------
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-------------------------------------------TCTGGCCGCCGCCTCGCCGTCTACAACCCGGCCACGC
GGGAGCATGCCTCC------------CTCGGGAGGTTACCGTC---GGACTTCAGGATCTTGGGGATGTACCCACACCGC
CCCACTGGAGAGTACCGGCTGCTACTG-----------------------------------------------------
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>chr3D_521
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-----------------------------------------------------------------------------CCG
CCGCCACCAGCACAGCTCC-------CAGCCG------GCGACCATGGCGGAGGAGGCTGCGGCAGCAGCAGCGGCGCCT
CTCCTCGAGGGCCTCCCAGATGAGATCGTCCTGTGGGAGATTCTCGTCCGCCTCGACCCCAAATCCCTCCTCCGCTCCCG
CGCCGTCCGCCGCGCCTGGCGCTGCGCCACCTCCACCCGCCGCTTCCTCCTCGCCCACCATGCCCGCCAGCCAACC----
----CTCCCTTTCGTCTGC------------------AGAGACAGATCCCATAGCATCCTCGCCTTCGACCAGCGGGCCG
---CCGCCGATGCCCAGCTCCACACCGTCGCCCGGCTTGC------CGAGCCCTTCCTTCTTGAGGCCTCCTGCGACGGC
CTCCTCGTCCTCTCCAGGTGCACCCGCC----------------------------------------------------
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-----------------------------------------------------GCTTCTCCGTCTACAACCCGGCCACGC
GTGAGCATGCCTCC------------CTTAGGTGTCCAGCCTG---GGACTTCAACATCGTGGGGATGTATCCACATCCA
CCTACCGGCGAGTACAGGCTGCTACTGCGATGTTG---C------------------------GACATGGACATGCCTAA
GGACGAATTTG---GCTGCTATGTCCTTCCGTTGGGCTCCGACCAGCCACCGAGGTACATCGGGTG---TCCGGAGAGAG
AAGTGGTCTCAGCGCTCTTCAA------TGTACCTGTCTGGGCGCATCATAGTCTGCATTGGTACCCACTGCCTTATCTG
AAATATGAGACTGAAAGC---------GCCCAGCTCGAGGA---TCAGGCTGAACAGCAAC---TGGTAATAGTTTTCGA
CACCATAGCTGAGTCGTTTCGGCAGATGCGTGCTCCACTTGCTT------CCACCTACTCATCTATCTTTGAGGTGGATG
GCATGCTTGGCATCTATAGCTCTAACAGGG------CTAAGGAAATTGTTGATATATGGGTGCTGCAGAACTATGAAAGT
GAGATTTGGGTCTTAAAGTACCGGGTTGAATTGCCGC---------TCACACAAATCAGGAGGAAGCTTGAAGCCCGTGA
TGGTGAT---GGCAATTGGTATGTGATCGTTGCTTCGGGTGATGGTGATGTGCTCTTGCTAGTCAGG-------------
--TTTGGTC---------ATTGGCTGTTTTACGTTGACACTGATGGCAAACTGGTTGCTAGCTTCCA------------A
GACATCAATTTCTATAAATATGGGCTCAAACAGACTCTTGTTCCTCATGATTTCTTCACGACACGAGAAGGTTTTGCTGC
GGACGCT-------TCACCATTCATC---------TGATGGCGCCTC------------------AAGGGCCTAGTTTTC
GTATCCTCATAAGCTGCAGCGTCTATGAGCTGGATCAAGTATGAGCAGGCTCAT---TTCTTCTTTTTATGTT-------
-GATGTATAAAAAGTTATGATAAGAGGTGACTGTTATGTGG---------ATCTATGCTT---------GGTTAAATACC
CTTTC------GGGCT----AAGGT---TATGTCTTGTGTTAATGCTAAACTTATCAAGCTGTTTGCTCTCCTTT-----
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>chr3D_549
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--------------------------------CAGCCGGCGACCATGGCG---------GCAGCAGCAGGAGCGGCGCCT
CTCCTCGGCGAACTCCCGGATGCCATCGTCCTCTGGGAGATCTTGGTCCGCCTGGACCCCAAGTCCATCCTCCGCTGCCG
CGCCGTCCGCCGCGGCTGGCGCAGCGCCACCTCCACCCGCGGCTTCCTCCTCGCCCACCACGCCCGCCAGCCAGCC----
----CTCTCCATCTTCTCCCACTGTAAGTACATCGGCAGCGACAGGAAGCAAGACATCCTCCTCCTCGACCACCAGGC--
----------CGCCCAGCTCCACACCGTCGTCCGGTTTGA------CCATCCCTACCAACTGGAGGGCTGCTGCGACGTC
CTCCTCCTCCTCTCAACCAGGCATAGCATTTTGAAT------------G-------------------------------
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-----------------------------------------CCTCTCGCGCCGGCCTCTCCGTCTGCAACCCCACCACGC
GTGAGATGGCCTCC------------CCCG---GGCTACTGCT---GGACTTCAACATCTTGGGGATGTACCCGCACCGC
CCTACCGGCGAGTACCGGCTGCTACTGCAAGGGAGGAAGCACGAGACGACGCAG------------TGGGACACACCTAG
CGACCGAACTG---GCTTCTATGTCCTTGCGCTCGGCTCCCACCAGCCACCGAGGCACGTCGGGTGCGGCTCCGAGACCA
AGCTAGTGTCGGCGATCTTTGAAGCCGGTGTACCTGTCCGGCTGCGTGATTGCCTGCACTGGTACCGAGTGTTTTATC--
----------------GC---------AACCCATCGGAGGA---GGACACTAGAAGCAAACTGG------TAGTATTTGA
CACCATAGCCGAGTCGTTTCGTCAGATGCGTGCTCCACTTGTTC------CCACCAAGTCATGCATCTTTGAGATGGATG
ACACGCTTGGCATCTATACCTGTAACAGCATGACCACCGGCCAAGTTGTCGACATATGGGTGCTACACAACTACGAAAGT
GAGGCTTGGGACTTGAAGTACCGGGTTCGATTGCCGA---------TCGCACAAATCAGGGGGAGGCCTGAAGGTCCTGC
TGGTGG---------TTGGTTTCTGGACGTTGCTTCGGGTGATGGTAACGCGCTCTTGCTGGTCTGTTT-----------
----TGGTCGTTCCA---------TGTTTTACATTGACACTGATGGCAAACTGGTTGCTACCTTACGAAGCTGCC-----
-------ATTCCTGGGATCAACGGCTGAAGCAAACTCTTGTTCCTCATGATTTCTTCGCGGCACTCGAAGGTTATGCTGT
GAATGGT-------TCCCCTTTCATCCCTTCCATCTGATGGTTGTTGAGTGAGGTGGTGCTTCTTAACGTCCTGGTTTTC
CTATCCTCATGAGCTGCAGTGTCTATGAGTTGGATCAAGTATGAGCATCATGAT---TTCTTCGTTTTGTGTTGAACTGT
TGATGTATAAAATGTTGTGATCAGAAGTGAGTGTTATGTGGTTGCATTGAACCTATGCTTGTTTC---------GATACC
CTTTCCTTTCGGGGAT----GAAGTGAGTGCTGCTTGTGTTGATGCTAAAATTACCAAGCCATTTTGCTCTCCGTTTT--
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>chr3D_549
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--------------------------------CAGCCGGCGACCATGGCG---------GAGGAG---GCCGCGGCGCCT
CTCCTCCACGGGCTCCCAGATGAGATCGTGGTATGGGAGATCCTCATCCGCCTCGACCCCAAATCCCTCCTCCGCTGCCG
CGCAGTCCGCCGCGCCTGGCGCTGCGCCACCTCCGCCCGCCGCTTCCTCCTCGCCCACCACGCCCGCCAGCCAACC----
----CTCCCCATCGTCTTC------------------GGCGACAGATACCGTAACATCCTTGCCTTGGATCACCGGGCCT
---CCGCTGACGCCCAACTCCACACCATCGCCCGGCTTGA------CGAGGACTTCATGCTGGAGGCCTCCTGCGATGGC
CTCCTCCTCCTCTCCAAGTTTGACCACATTGT---T------------G-------------------------------
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-----------------------------------------GCTTTCGCACCTACCTCTCCGTCTGCAACCCGGCCACGA
GTCAGCATGCCTCC------------CTGA---GGCCACTGTC---AGGTTTTGACATCTTGGGGATGTACCCACACAGC
CCTACCGGTGAGTACCGTCTGTTACTGCAACGGATGAAC------------------------TACATGGACTCGTCTGA
ATATCAAATTG---GCTTCTATGTCTTTGGGTTGGGCTCCAACGAGGCACCGAGGTACATCGGGTG---CTCAGAGACCA
AATTAGCGTTGGCGTTCTTCAA------TGTACCTGTCCGGCTGCGTGATAGCTTGCATTGGTACCCACTGGAGTACCGG
A---------CTGAAAGC---------GACCATTTGGAGTA---TGAAGAAGAAAGCAAACTGGTGGTAACAGTATTCGA
CACCATAGCTGAGTCGTTTCGGCAGATGCGTGCTCCACTTGTTT------CCACCAATTCATCTATCTTTAAGGTGGATG
ACATGCTTGGCATCTGTAACTGTAACCAGG------CCTTGGAAATTGTTGATATATGGGTGCTGCAGGACTACCAAAGT
GAGGTTTGGGACTTAAAGTACCGGATTGAATTGCGGCTCGACGAACTCACAAAACTCAGGGGGGAGCTTGAAGGCCTTGA
TGGTGAT---GGCAATTGGAGTCTGACCGCTGCTTCGGGTGATGGTGACGTGCTCTTGCTGGTCAGTTTCAGTCACTGGA
GTTTTGGTC---------ACTGGCTGTTTTACGTTGACACTGATGGCGAACTGGTTGCTAGCTTCCA------------A
GACTTATATGCCTGTAAACATCGGTTCAAACAAACTCTTGTTCCACATGATTTGTTCACGACACTAGAAGGTCATGCTGT
GGGCGCC-------TCACCACTCATT---------TGACG---------------GGTGCTTCTTAACGGCATAGTTTTC
GTATCCTCATAAGCTGCAATGTCTGTGAGTTGGATCAAGTATGAGCATGCTGAT---TTTTTCTCTTG---------TGT
TGATGTATAAAAGGTTATGATCAGTAGTGACTCTTATGTGGTTACATAAAATCTATGCTTGTTTC---------GATATC
CTTTC------GGGATGCAAGAAGTGACTGCTGCTTGCGTTGATGCTAAAATTACCAAGCCATTTTGATCCGCCTCATGT
CTCTGTTTTCTCGGGTTGAGTACTTGCTATATTCTATTTATCTAATGTCTTCACAGTACTTG-----------------A
TATTTATCAATCTTTATGCCTCATATCACTATTTC---TTTGACTGAAGAATTGGTTTTACCTATGGATCTAGTGGTCTT
CTTAATAGTCAGTTTTTAGTGT-----------------GTTTCCTGTTTGTACCCTTTGCCGTAGCTGACAATGGGAAG
TGGCAGATTTTCT--CTTTGCTGACTTGCGAGCGGCACCTGACTTCTAGAATGCTTTGGGGAACTGCTAGTTAAATTGAA
TTTTCCATATTGCATCATAATAGTCAATTTCTCAAAGAAGTGTCCTGTTATAATTTTGTTTTCTTCATGCATCTACCACT
ATGAACTGTGACTCTCTGTGCTACTGGTTGTAACTTGTAACTAGGATATGAGCGCAGATGGTGTGCTGCTCTCTCTAAAG
CAAACTTGGCTTATGTAATTTGTGGGAGCTGATGGTCTGTTCTGGGGCCATTTTACGTGTCTGTCATAATAGGCTGTAAC
AGTTTAGTTTTATCTCTTATAGGATTTGGACATCTTTCACTCTAACAAATGATTCCAAATCTTCTTGATTTCTTTCCTAA
AGAATGATTTTAGGTTATGTTCCAATGTCATATTCTGGACCTTTGCCCAAGAGCTAACAATTCGGAGAAACGAGGGGATA
GGGCTGTTTTCCTAAAGAATGATTTATTATCTCTCATTATTTCAACTCAGCTGTTAACCACTTTGGATAAAGGCTTCGTG
TGATGCTTGTAGCACAATTGCTCTTAATAACTTCAGCTGTACTTGAAAGTTTTTGCTTGAGTCAACCATAAATGCCCCCT
AAAGTTTATGCCTCCTGGAACTGTGCTGACGTGGAAGGCGTGTGTGGGTCGCTCCCGGGCATGTAGGCATCGGCCTGCCG
TCGAAGAGATCACCTTGCTGCACGGATGGAAACCTATGCTGGCTATCTCAATTATTCGGTTATTTTCTTGCCGATCCAAG
TTCCAAATCCACAGTAGTATGTCAAGCTTGGTCTGTCTGCAACCTACTCTTTGATCAACTCTAAGTTGAATGTGAAAGTT
GCCTGCCAGACTTGTCCTGTGCCTGATTGAGAGCGACATCGTTCACCAGTAGCTGTTTGTCTGATTATATGTGCATTCCT
GCTTTACCTCTTGTTTACAACTTCAATATATATCTTCAGGTAAGGAAAATATGCTCACCCTTTTAGTATAGCTTGTGTTT
GTGAACAAAACGATACACCGATGATGCAGGTGATGCAGAATAGTGTAATATGTTACTTTCTTCATTTATTCTTTGTTGGA
TTTCTTTGTTACTGCAGAAAAGTCAGCTAGATGAGTCTGGTAGATTCAGATGTTTACATACTATTTTTTCTATGAAGCAA
AGTTGTTTAGAACTCAATCTCTAGAGCTCAAAATGTCTTTGTAATGTGGCAACAGTAAGCTTGCAGAGAACTGTAGTTGA
AAGTAACATGAACGATTCTGTTCCCTGTGGGCTTTGGTTCTGCAGATAACAGTAGTTGAAAGCAATAGTAAGCATGCAGA
GAACAGAATTCTGCTTCTACGATTGAACCTTTGAAGACATACCGTGCCTCTGTTCCCTGTGGGCTTTGCTACTTTTGCAA
TTATGTTCTAAGCAAGAAACAGGTATTGGATTTGCTTACTGGTGATCTATGGAACTGATGTATGCTGCAGCCAGACTTAG
AAAAGGTATGAGTGTACTGTTTCATCAATTTTTGTAATGCTCCTGAGCGTCGATGGTTCACCCTTTGTAACCCTTTTGTA
ATTTGTTCCTTGTTGGATTTTTGGGTGTTGCTACCGAAACACAAATTTGTTGGACAGTTGTTGTGAAGAACTTATAAGTT
GTACTTTCCATATATAAGTTGCAGATGCTTTCCATACAAATGTTCCGAACATGGCTTGTTTTTGTTGTTTCTAGATGGGT
CCAGTAGATTCAGACGTTTAGTTTTGCCGTGCAGGTGTTGTACTTCACATTTACTATAATGCATTGATTGGATCATACTA
TGAAACAAAGGTGGTTTTGAATTGAACTCAATCTTGAGAGCTCAAAACGTTTGTGTGATATTGCAACAGTAAGCATGCAG
AGAACAGTAGTTGAAATGAAAGTAAGATAGACGAGTGGATGAGCTATTGAATGGCAGGTACATGCACAACTACACTTCTC
ACCCTAACTCTATAAATACTTCTTCACTCCCAACTGCTGCATCAAGTCTGGGTTCCTTCTGATTGAGTTGGGAAACTGTA
GTTTACCATTCAGCAGCAGTTTATCTTCTTTTTATCTTACCGGTTCAGAAGTTTATCTTGGCGAGATGGACCCGCATGGG
CCTGGAGGAGGACCGGGTTGGGGAGGCCCTGCAGGGTGGGGCCCAGGAGGGTGGGGTCCGGTTCCACCTGGTGGGCCTGG
GTTTCCTGGTGGCCCTGGCCCTGGTTTCTGGGGGCCTGAGTTCGGTGGGTTCTTCGGATCCTGGTAAGTTGAATTCTCAG
CTTACTAATGGAGGTCATCAGTTCAATCAGTTAGATTGTCAACTGTTTTCCCTTCTAAAAAATCAGTCTATCTCTAAGAA
ATCAGTCTATTCACTCGGTAGATGATTAGTGGTTCGGGGATCAAGTATAATATTTTCGGCACCAACTAGTAGTTTAATTT
TGAACTCTGAATCTCTTTTGTTGTACACGGATACATCTGAAACTCTGGACGAACACTTCTTCTGCAGCTTCTACCTCCTG
TGCTGCTGCTGCCTGCTCCAAGATTGCTGCGGTCCTCTGTTCGGACACCCGGGCCCTGGCGGTCCGTCGCCTCCTTTCTA
GCCTGTGGAGCTGCGGGTCATATCCACCACAAGAAACAATGCACTTGAGAACAATTTCTAGACTATGTATCCGCGGAAAC
GCAGTTGTGTGAAGATATTGAATCTTGGGAGTTCCCCTTGCTACTATGTAAATACTACTGAAAAGCATACTCATTGTCTT
AGTAGTATCTATCCTGGAGATCATTATTTCAGTCCTAGTTTTCATATCCTCATGAGCTACAATGTATGAATTGGATCAAG
TATGAACATGCTGATTTCTTCTTTTTGTGTTGATGTATAAAAAGTTATGATCAGAAGTGACTGTTATGTGCTTGCATCAA
ATATATGCGTGTTACGATACGCTTTCGGGATGAGGTGACTAAATGCTTCATTTGATGCTAAAAT
>chr3D_563
GGCGG---------------------------------------------------------------------------
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------------------------------------------------------------------CAGCAGCAGCGACC
CTCCTCCCCGGCCTCCCAGATGAGATCCTGGTATGGGAGATCCTCGTCCGCCTCGACCCCAAATCCATCCTCCGCAGCCG
CGCCGTCCGCCGCGACTGGCGCTGCGCCACCACCAACCACCGATTCCTCCAGGCCCACCACGCTCGCCAGCCCGCC----
----CTGCCCATCCTCTCC------------------AGCGACGGTTACCGTAACATCCTCACCTTCGACCACCGGGCCG
CCGCCGGCT---CCCAGCTCCACACCGTCGCTCGGCTTGCTCTCTCCCAGCCCTTCAAGCTCGAGGCCTCCTGCGATGGC
CTCCTCATTCTCTCCAAGCATGAGATGGCTGGCTCTCGCCCTGGCCTCG-------------------------------
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-----------------------------------------GCCCTCGCGCCCTCCTCACCGTCTGCAACCCGGTCACTC
GGCAGCATGCCTCC------------CTCA---CGCGGACACTCAAGGACTTCAACATCTTGGGGATGTACCCACACCGC
CCTACCGGCAAGTA------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGCTTGCATTGGTACCCAGTGTGTTATA--
----------------CCCCAGTGGATGGGGAGACTGCATTTTTTCAGCTTGAAAGCAAAC---TAGTAATTGTGTTCGA
CACAATAGCTGAGTCGTTTCGGCAGATACGTGCTCCCCTTGCTCCTCCCGCCAACTACTCATGTATCTTTGAGATGGATG
ACATGCTTGGTATCTATAGCTGTGACAAGG------CCAAGAAAATTGTTGATATATGGGTGCTGCACAACTATGAAAGT
GAGGTTTGGGACTTAAAGTACCGGGTTGATTTGTCAA---------CCACAGAAATCTGGGGGAAGTTTGTAGGCCTTGG
TGGTGAT---AGCTATTGGCATGTGACTGTTGTTTCAGGTGATGGTGACGTGCTCTTGCTGGTCAGGTT-----------
----TGGTCAATCGCAGAACTGGCTATTTTATGTTGACACTAATGGAAAACTGGTTGCTAGCTTCCA------------A
GACTTATATGTTGGTGAAGGTCGGTTCAAACAAACTCTTGTTCGGCATGATTTCTTCACGACACTAGAAGGCCATGCCGT
GGATGCT-------TCACCTTTCATC---------TGACAGATGTTGGGTGAGGTTC--------------------TTA
ATATCCTGATGAGCTGCAATGTCTAGGAATTGGATCAAGTATGAACCTGCTGAT---TTCTTCCTTTTGTGTTGT-----
---TGTATAAGATGTTG-GATCAGAAGTGACTGTTATGTGGTTGCATGAAATGCTTG------------T-TTTGATACC
CTTAT------GGGAT----GAAGTGACAACTGTTTATGTTCATGTTAAAATTACCAAGACATTTGGGTCTGCTTTTGA-
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>chr7D_564
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-----------------------------------------------------------GCGGCCGCAGGAGCGACGCCT
CTCCTCCGCAACCTCCCTGACGAGATCGTGCTCTGGGAGATCCTCGCCCGCCTCGACCCCAGATCCCTCGTCCGCT----
--------GCCGCGCCTGGCGCCGCGCCACCTCCACCCGCCGCTTCCTCCTGGCCCACCACGCCCGCCAGTCCGCC----
----CTCCCCATCGTCGCC------------------GACAACGGGCACCGTACCTTCCTCGCCTTCGACCACCGGGCCG
CCGCCGCCGACGCCCAGTTCCACACCGTCGCCCGGCTTGG------CGAGTCCTTCAGTCTGGAGCTCTGCTGCGACGGT
CTCCTCCTCATCGCCAAGTCTGGCATGCTTGGCAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCGCGCCCGCCTCGCCGTCTGCAACCCGGTAACGC
GTCAGCACGCCTCC------------CTCC---CGCCGCTGAC---GGACTTCAACATCCTGGGGATGTACCTACACGGA
CCTACCGGCGAGTACCGGCTGTTACTGCAGTGGAGGAGTGCAATGGACTGGGGGGACGACAGTGACTGTGACTCGCCTAC
AGGCAAAAATG---GCTGCTATGTCTTTGCGCTGGGATCCGACCAGCCACCGAGGTACATCGGGTT---GTCGGAGCCCA
AATTCTCGTCGGCTTACTTCCA------CGGACCTGCCCGGGTGTGTGATAGCCTGCATTGGTGCC---TGTTTTATC--
----------------GCCCAGGCGAGAACCCACTGGAGGATTGTGAGGCTGGATGGGAACTGG------TGGTATTTGA
CACCATAGCTGAGTCGTTTCGGCAGATGCATGCTCCAGCTGATC------CCACCAAGTCATTCATCTTTCAGATGGATG
ACATGCTTGGCATCTATTGCTGTAACAAGG------ATGCGGAAGTTGTTGATATATGGGTGTTGCCAAACTACGAAAGT
GAGGTTTGGGACTTAAAGTACCGGGTTGCATTGCCAA---------TCACAGAAATCAGGGGAAAGCTTGAAGGCCATGA
TGGTGAG---GCCTATTGGTATGCGACCGTTGCTTCGGGTGGTGGTGACATGCTCTTGCTGGTCAGTTT-----------
----TGGTT---------TTTGGCTGTTTTACGTTGACACTAATGGCAAACTGGTCGCTAGCTTCCA------------A
GACATCTTTCCCTCTAGGCATCGGCTCAAACAAACTCTTGTTCCGCATGATTTCTTCAGAACAGTAAAAGGTCAGGCTGT
CGACGCT-------TCACCTTTGATC---------TGACGGCTGTTGAGAGATGCGGTGCTTCTTAACGGCCTAGTTTTC
GTATCCTCGCGAGTTGCAATGTCTGTGTATTGGATCAAGTATGGGCCTGCTGAT---TTCTTCTTTTTGTGTC-------
------------------GATGAAAAGTGACTGTCATGTGGTTGCATGAAAGCTATGCTTGTTTCAGGCT-TTAGATACC
ATTTC------GGGAT----GAAGTGACTATTGCTTGTGTTGATGCTAATATTACCAAGCCATTTTGTTCTGCTTTTGA-
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>chr7B_564
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-----------------------------------------------------------GCGGCCGCAGGAGCGACGCCT
CTCCTCCGCAACCTCCCTGACGAGATCGTCCTCTGCGAGATCTTCGCCCGCCTTGACCCCAGATCCCTCATCCGCTGCCG
CGCCGTCCGCCGCGCCTGGCGCCGCGCCACCTCCACCCGCCGCTTCCTCCTGGCCCACCACGCCCGCCAGCCCGCC----
----CTCCCCATCGTCGCC------------------GACAACGGGTACCGTACCTTCCTCGCCTTCGACCACCGGGCCG
CCGCCGCTGACGCCCAGTTCCACACCGTCGCCCGGCTTGA------CGAGTCCTTCAGTCTGGAGCTCTGCTGCGACGGC
CTCCTCATCGTCGCCAAGTCTGGCATGCTTGGCAA---------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------TCGCGCCCGCCTCACCGTCTGCAACCCGGTAACGC
GTCAGCACGCCTCC------------CTCC---CGCCCCTGCC---GGACTTCAACATCCTGGGGATGTACCTACACGGA
CCTACCGGCGAGTACCGGCTGTTACTGCAGTGGAGGGGCGCAATGGACTGGGGGGACGACAGTGACTGTGACTCGCCTAC
AGGCAAAAATG---GCTGCTATGTCTTCGCGCTCGGATCCGACCAGCCCCCGAGGTACATCGGGTT---GTCGGAGCCCA
AATTCTCGTCGGCTTACTTCCA------CGGACCTGCCAGGGTGCGTGATAGCCTGCATTGGTGCC---TGTTTTATC--
----------------GCCCAGGCGAGAACCCACTGGAGGATTGTGAGGCTGGAAGGGAACTGG------TAGTATTTGA
CACCACAGCCGAGTCGTTTAGGCAGATGCGTGCTCCAGCTGATC------CCGCCAAGTCATTCATCTTTGAGATGGATG
ACATGCTTGGCATCTATTGCTGTAACAAGG------CTGCTGAAGTTGTTGATATATGGGTGTTGCCGAACTACGACAGT
GGGGTTTGGGACTTAAAGTACCGAGTTGCATTGCCGA---------TCACAGAAATCAGGGGAAAGCTTGAAGGCCATGA
TGGTGAG---GGCTATTGGTATGCGACCGTTGCTTCGGGTGGTGGTGACATGCTCTTGATGGTC---------------A
GTTTTGGTT---------TTTGGCTGTTTTACGTTGACACTGATGGCAAACTGGTTGCTAGCTTCCA------------A
GACATCTATCCCTCTAGGCATCGGCTCAAACAAACTCTTGTTCCGCATGATTTCTTCAGAACAGTAAAAGGTCAGGCTGT
CGACGCT-------TCACCTTTC---------------------------------------------------------
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>chr3D_806
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-----------GCCCAGCTCCACAGCGTCGCCTGGCTTGA------CGAGGTCTTCCACCAGGAGGCCTCCTGCGACGGA
CTCCTCGTAATCTCCAAGTTTAACA------TGACT------------G-------------------------------
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-----------------------------------------CCTCTGGAACCTCCTTCTCGGTCTGCAACCCGGCCACGC
GTGAGCATGCTCTC------------CTTGGG---CAACCACG---GGGCTTCAAGATTTTGGGGATGTACCCACACCGC
CCTACCGGTGAGTACCGGCTGTTGCTGAAACGGAGGAGGTTGAATCT------------------------CATAGCTAA
CCACTCAATTG---GCTGCTATGTCTTTGCGTTGGGCTCCAACCAGCCACCTAGGTACATCGGGTG---GCTGGAGGC--
----AGCGTCAGGGGTCTTCAA------CGCACCTGTACGGGTGCGCGATAGCCTGCACTGGTACCCAGTGCTTTACCCG
A---------GTGAAAAC---------AATGCACTAGACTA---TCGTACTGAAAGCCAGC---TGGTAATAGTATTCGA
CACCATAGGAGAGTCATTCTGCCAGATGCATGCTCCAGTTGTTCCCACCAACTT------ATATCTCTTTGAGATGAGTG
GCACGCTCGGCATCCATAGTCGTGACCATG------CCAACGAAATTATTGATATATAGGTGTTGCAGCACTACGAAAGC
GAGGCTTGAGATTTAAAGTACCGAATCAAATTGTTAG---------TTGCAGAAATCAGGAAGGAGTTCCAAGGTTGTGA
TGACTG---------TTGGGATTTCGACGTTGTTTCGGTGGATGGTGACGTGCTCTTGCTGCTCGA--------------
-TTTTGCTT---------CGTGGCTACTTCATGTTGACAGTGATAGCAAGTTGGTCAACAGTTTCTATCGCGGTTGCCAA
GAACTCAGTATGTCTAAATGTCGGCTCAAACAAAGTTTGGTTCAGCATACCTTCTTTTCGGCTCTAGAAGGTTATTCTGT
GAATGCT-------TCGCCTTTCATC---------GGAC--CTATCTAGTGAGGTGGTGCTTCTTAGTTCTCTAGCTGTA
ATATACTCACGAGCTGCAATATCTATAAATTGGATCAAGTATGAGCCTGCTGGCAGCTTCTTCTTTTGGCGATGA-----
---TGTATG-----------------------------------------------------------------------
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>chr3D_1248
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----------------------------------------------------AAAGCAAAC---TAGTAATTGTGTTCGA
CACAATAGCTGAGTCGTTTCGGCAGATCCGTGCTCCCCTTGCTCCTCCCACCAACTACTCATGCATCTTTGAGATGGATG
ACATGCTTGGTATCTATAGCTGTGACAAGG------CCAAGAAAATTGTTGATATATGGGTGCTGCACAACTATGAAAGT
GAGGTTTGGGACTTAAAGTACCAGGTTGATTTGACAA---------TAGCAGAAATCTGGGGGAAGTTTGAAGGCCTTAA
TGGTGAT---ACCTATTGGCATGTGACCGTTGTTTCAGGTGATGGTGACGTGCTCTTGCTGGTCAGGTT-----------
----TGGTCAATCGCAGAACTGGCTGTTTTATGTTGACATTGATGGAAAACTGGTTGCTAGCTTCCA------------A
GACTTATATGTTGGTGAAGGTTGGTTCAAACAAACTCTTGTTCGGCATGATTTCTTCACGACACTAGGAGGCCATGCTGT
GGATGCT-------TCACCTTTCGTC---------TGACGGATGTTGGGTGAGATTC--------------------TTA
ATATCCTGATGAGCTGCAATGTCTAGGAATTCGATCAAGTATGAGCCTGCTGAT---GTCTTCCTTTTGTGTTGT-----
---TGTATAAGATGTTATGATCAGAAGTGACTGTTATGTGGTTGCATGAAATGCTTG------------T-TTCGATACC
CTTTT------GGGAT----GAAGTCACAACTGTTTATGTTGATGTTAAAATTACCATGACATTTGGATCTGCTTTTGAA
GT------------------------------------------------------------------------------
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>chr3D_1253
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---------------------------------------------------------GAAC---CGGTAATGGTATTCGA
CACCATGTCAGAGTCGTTCCGGCAGATGCATGCTCCAATTATTCCCACCAAGG------CATGTATGTTTGAGATGGATG
ACACGCTTGGCATCTATAGTTGTAACACGA------CCTTGGAAATTGTTAATATATGGGTGTTGCATAACTACCAAAGT
GAGGTCTGGAACCTAAAGTATCGGGTTGCATTGCCGA---------TCGCAGAAATCAGGGAGAAGTTTGACGACCATGA
TG---------CCTATTGGAATGCGAATGTTGCTTC---------TGATGTGCTCTTGCTGGTTAGTTT-----------
----TAATCA---------TTGGTTGTTTTACGTTGACACTGATGGCAAACTGGTTGCCAGCTTCCA------------A
GGCTTCTATGCCTCTCGTTTTTGCCACAAACAAACTCTTGTTCCACATACCTTCTTTACGACACTAGATGTTAATGATGC
GAGAACTTTGAATCTTATGTCTCATC---------GGAAGGCTTTTTACTGAGGCGGGGCTTCCTAATGGTGTATTTTTC
GTATCCTTTTGACCTACGATGTCTATGAATTGGATCAA------------------------------------------
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>SNPs
SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS-------------S--S-S----SS
-------S----------S----------------------SSSSSSSS--S-------------------------S--
-------------------------------------------------------------------SSS----------
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-----------------------------------------------------S----------------------SSSS
SSSS-----------S-------------------------------------------------------S--------
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-----------------------------------------------------------------------------S--
-------------------S-----------------------------------------------S------------
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-----------------------------------------S--------------------------------------
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--------------------S----------------------------S--------------------S---------
-------------------------------------------------------------------------------S
--SSS--S--SSSSSSS-SSS-S-S----SSS-SS--SSSSS--S-SSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSS-
--S--SS----SSS-S-----SS-S--S--S---SSSS--SS--------S----S---SSS---SSS-SSSSS-SSS-S
S-SSS--S-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSS-----------SS-SSS-S--SS-----S--SS--SSS-SS
S-SSSSSS--SSSSS-----S-----S--S--SS-S--S---S--S-S---SSSS----S-S------SS--S----SSS
SSSSS-S-SSS-SS-------------------------S--SS--S--SS----SSS-----------S---S-SSS-S
SSSSSS-SSSSS-SSSSS-SSS-S-SS-S--SSSSSS-SSS-S-SSSSSSSSSSSSSSSSSSSSS-SSSSS-SSSS-SSS
SSSSS--SS-S-SSSS-SSSS-SSSSSSSSSS-SS-SSSS-S-SSSSSSSSS-SSSSSSSSSS-SS-SSSSS--S-S-SS
--SSS---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------S-SS---S-S------S--S-S-SSS-SSSS
SS--SSSSSSSSS--SSSS-SS-SSSS-S--SS--SSSS-SSSSS-S-SSS-SSSSSSS--S-SSSSS-S-SSS------
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-------------------------S-S--SS----SSS-S--S---SSSSSSSSSS-SS-S-SSS--S-SS-S----S-
SS-S-SS-SS-SS--S-SSSS-------------------------------------------
>forward_33
-------------CGACGATGACAAGGCTAGCT-----------------------------------------------
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>reverse_2495
--------------------------------------------------------------------------------
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--------------TGGGCTCAATGGCTACCATG----------------------------------------------
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----------------------------------------------------------------
