>input_sequence_70819
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----------------------------------------ATGCCTCTGCGCGTGCTCGCCGGTATTAATACCCC----A
GAGCCCACTGCAACCTCCACCCATCCGACCACATTCAAGTG---GATGCTCCTCGATCTCCATCACTACAGCC---CACT
TGAGTTCTTGAAGCTTCGAAGCTCACCTAGCTCGCCGCG-----------------------GGCCATGTCGAGCGCCGG
CAAGAAGCAGCAGCAGCAGCAG---GCGAAGAAGCCGGCGGCGGCGGAGGACATCGAGATCAAGAAGGTCTTCTCCCGCT
TCGACACGGACGGCGACGGCCGGATCTCGCCGTCGGAGCTGGCCGCGGTGTCACGCGCCATCGCGCCCCCCGCCGCCACC
GACTCCTCCGCGCAGGGCCGCGAGGTGGCCTCCATGATGGACGAGCTCGACACCGACCGCGACGGCTACGTCGACCTCGG
CGAGTTCGCGGCCTTCCACGGCCGCGGCCGCGGGGAGCGCGAGCTGGACGCCGAGCTGCGCGACGCCTTCGACATCTACG
ACATCAACGGCGACGGCCGCATCTCCGTCGCCGAGCTCAGCAAGGTCCTCAGCCGCATCGGCGAGGGATGCAGCACCGAG
GACTGCGAGAAGATGATCGCCTCCGTCGACGTCGACGGCGACGGCTGCGTCGGGTTCGAGGAGTTCAAGAAGATGATGAC
CGCCGGTGACGCCAGCGCCCGACCCGAAGC---AGCGA---CCGGCGCCGCTGACAACAACAAAGCCAAGAAGGAGTAG-
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>chr3D_1_TraesCS3D01G041400
AATTTGTCACAAAGAAAAGAAAACAATTTTGGGCTTTTTTGCTACTGGGCATGATGGGGAGGGGCGTTCGTGCTGGGGGG
CTCTCCTCTCGAATGAAAATGTTCGTGAGCGTTGATCCATCGTAACGAACTTTGGTTCGGCCTGGAATGTCCCCAGGGCG
ACCGTACGTGCGTTATCGGGGTCCATATTTTATTTGATACACGTTTGCAAATCTCCCAAACCATATGAACCTTTTTTGAA
CAAAGGTGGGATCCCGAAGGATCATGAGACTTTATCCTATCAGATACTACCTCCGTCATGCTTTATTGGTCCTCTTAATA
TTTGGTGTCAAAATTTGGCCATTGATTTAACTAACAAAATGTCAGCGCATGTCACAACAAAATATACCATGTGAAATTAT
GTTCATATATAAGTCAACGATATAATTTTTTGTAACATGCATTAACATTTTATTACTTAAATCTACTGTCAAAGTTTGGC
GCAAAATAGGAAGGGGACCAATAAACAAGGATGGAGGTAGTATCACACAATATATTTTCACAAACATGACTTGAAGAAAC
TAGCAAATAAAGACAAGTCCCTAGAATTTACAGGAAGGACCCTGGATTGATCCGGCAGCGCCGCCGCACCGGCACGACCG
TCGGCATCGGGGGGCTGGAGAGAGAAGGTGGGGAGGGGAAGCTAGAGAGCAATCGACTCCTCGATTGATTTTTCGAGTTT
CGTTTCGTTTGGTTTCGGGAGGGCCTCGCACGCATAACGAATTCGCATTTCTCTCTCTCTGTCTGTCTGTCTGAAAAGAG
AAAAGAAAGGAAAAGAAAATGAGGGGTGCGTACGAGGAGACCGCGGGACGTGCCAACTCCTCCACGGACTAGCACAATTT
TCGTGACACAGAAACCGTTCCGCGACACAAACGTGGCCGCAGGGTGACTCGCATCGCGCCGTACGCCTTGCCCCACGCAA
CCGGGAGAAGCGAACGCGCTCGCCGCCCCCCTCCCCGCGTATGCCTCTGCGCGTGCTCGCCGGTATTAATACCCC----A
GAGCCCACTGCAACCTCCACCCATCCGACCACATTCAAGTG---GATGCTCCTCGATCTCCATCACTACAGCC---CACT
TGAGTTCTTGAAGCTTCGAAGCTCACCTAGCTCGCCGCG-----------------------GGCCATGTCGAGCGCCGG
CAAGAAGCAGCAGCAGCAGCAG---GCGAAGAAGCCGGCGGCGGCGGAGGACATCGAGATCAAGAAGGTCTTCTCCCGCT
TCGACACGGACGGCGACGGCCGGATCTCGCCGTCGGAGCTGGCCGCGGTGTCACGCGCCATCGCGCCCCCCGCCGCCACC
GACTCCTCCGCGCAGGGCCGCGAGGTGGCCTCCATGATGGACGAGCTCGACACCGACCGCGACGGCTACGTCGACCTCGG
CGAGTTCGCGGCCTTCCACGGCCGCGGCCGCGGGGAGCGCGAGCTGGACGCCGAGCTGCGCGACGCCTTCGACATCTACG
ACATCAACGGCGACGGCCGCATCTCCGTCGCCGAGCTCAGCAAGGTCCTCAGCCGCATCGGCGAGGGATGCAGCACCGAG
GACTGCGAGAAGATGATCGCCTCCGTCGACGTCGACGGCGACGGCTGCGTCGGGTTCGAGGAGTTCAAGAAGATGATGAC
CGCCGGTGACGCCAGCGCCCGACCCGAAGC---AGCGA---CCGGCGCCGCTGACAACAACAAAGCCAAGAAGGAGTAGT
GATCCATGCTTTTGCTTGTAAAGAAGATTGTAATCTGAGGGGAGCGAAATGGAGGTGTTC---------------CTTCT
GGTCTCAAAATGGTACTAGTAAAAATTTGGAATAAGGAT------------------------------CTCTACGGTAA
CGGTTGTGTGTGCACGGTACTAGTACTAGAACTAGATATTTTCTCCGAGCGTGGGCATCTTGCTACCTACTTCATTTTCA
CATGAAAATGGATTTATCAGTTCGGTCGGTGCGATGTTGATGTTGAAGGGTGATACCCAATGCATTGCCAACATTATTTG
TAATCGGGTTCGGCAATACATGTGTTGTCATTTTGGTAACGTTGAATACTTTTAAGCAT---------------------
ATGCTTTAAAATGAATGATTTCATTAATAGTAGTTGTAAACAATTTTACACGCAACAAATATTAGAAGGTAATATCTATA
TCTATACCTACGTAATATCTCTATCTATA----------------------------------CCTACAGAAAAATATTA
TCTATACATATACCTAATTATTTGGCTTG------------TATGAACAGATTGAGAAAACCAAGATAAAACAATTTTCT
CTTGAACTATGAAAGTGAACTCAAATATATTGTAATACAAAATATTTTTGACAATTTTCATTGCGAAGATATAATTTTTT
TAGAAGATTTGCGAAGATATAAATAGTGCATACTTGTTAGAAATTGAGAAAATGTGTTTAAAGGCCACAAAAATAACGG-
CCCACTCCGACTAATCTTCAGGCCGACCAGGCGGCTGCCCTCTCCTATAGAACGCCTTTACTGCTCTTTTTGCGTAAACA
GCCTCGCGCGCACGGCTAGATAGGCCGCAGCCCATCACCATCCAAGTCGCTCGCTCGCATTAAACTGCCTTGCTCACTCC
GAGACACGTTTGCAAAACTGCAAGTTTGACCAGCAGACCCGTTGACCCTGACCTTTGACCCAACAAATGCTTGCCAATTT
CAGCGTTCACTTTGAAAACCATGATCTAGAAAAAGAATTAGAAAGAAGTTCACAAAAGTTGAAAAAAGTTCA--------
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>chr3D_1009
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------------------------------------------------GCGCGTGCTCGCCGGTATTAATACCCA----A
GAGCCCACTGCAACCACCACCCATCAG---ACATTCAAGTG---GAAGCTCCCCGATCTCCATCACTACAACCAGCCACT
TGAGCTC-TGAATCTTTGAAGCTCAGCCAGCTCGCCGCGACCGTCGAG--CCTCAAGTTTC--GCCATGTCGAGCGGCGG
CCGGAA------GCAGCAGCAGCAGGCGGAGAAGCCGGCGGCGGCGGAGGACATGGAGATCAAGAAGGTCTTCTCCCGCT
TCGACACGGACGGCGACGGCCGGATCTCGCCGTCGGAGCTGGCCGCCGTGTCCCGGGCCATCGCGCCGCCGGCCACCGAG
------TCCGCGCAGGGCCGCGAGGTGGCGTCCATGATGGACGAGCTCGACACCGACCGCGACGGCTACGTCGACCTGGG
CGAGTTCGCCGCCTTCCACGGCCGCGGCCGCGGGGAGCGCGAGCTGGACGCCGAGCTGCGCGACGCCTTCGACATCTACG
ACATCAACGGCGACGGCCGCATCTCCGTCGCCGAGCTCAGCAAGGTCCTCAGCCGCATCGGCGAGGGATGCAGCACCGAG
GACTGCGAGAAGATGATCGCCTCCGTCGACGTCGACGGCGACGGCTGCGTCGGCTTCGACGAGTTCAAGAAGATGATGAC
CGGCGACGTCG---GAGCCCGACCCGAAGCCGAAGCCGAGGCCGGCGTCCCCGACAGCAACAAAGCCAAGAAGGAGTGAT
CCGTTC-----TTGCTTGTAAA-TT-GTAGTAATGTGAGGGG--------------------------------------
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>chr3B_1009
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------------------------------------------------GCGCGTGCTCGCCGGTATTAATACCCC----A
GAGCCCACTGCAACCTCCACCCATCCCACCACATTCAAGTCGAAGAAGCTCCTCGATCTCCATCACTGCAACCAGCCACT
TGAGCTC-TGAATCTTTGAAGCTCAGCCAGTTCGCCGCGACCACCGAGAGCCTCAAGTTTC--GCCATGTCGAGCGCCAG
CCAGAAGCAGCAGCAGCAGCAGCAGGCGAAGAAGCCGGCGGCGGCGGAGGACGTCGAGATCAAGAAGGTCTTCTCCCGCT
TCGACACGGACGGCGACGGCCGGATCTCGCCGTCCGAGCTGGCGGCCGTGTCGCGCGCCATCGCGCCGCCGGCCACCGAG
------TCCGCGCAGGGCCGCGAGGTGGCGTCCATGATGGACGAGCTCGACACCGACCGCGACGGCTACGTGGACCTCGG
CGAGTTCGCCGCCTTCCACGGCCGCGGCCGCGAGGAGCGCGAGCTCGACGCCGAGCTGCGCGACGCCTTCGACGTCTACG
ACATCAACGGCGACGGCCGCATCTCCGTCGCCGAGCTCAGCAAGGTCCTGAGCCGCATCGGCGAGGGATGCAGCACCGAG
GAGTGCGAGAAGATGATCGCCTCCGTCGACGTCGACGGCGACGGCTGCGTCGGATTCGAGGAGTTCAAGAAGATGATGAC
CGCCGGTGACGCCGGCGCACCACCTCAACCCGAAGCGA---TCGCCGTGCCTGACAGCAACAAACCCAAGAAGGAGTGAT
ACATG-TGCTTTTGCTTGTAAA-AAAATTGTAATCCGAGGGAGCGAATTAGTTGTCAGTCCCTGTTGGCCATAGTCTTCT
GGTCTGAAA------------AAAAATGGGAATAAGGATCAATGTGCAATTGCCATTGTCGTGCTGTACCTCTACGATAA
CGGTTGTGTGTGCACGGTAGCAGTACTAGTACTAGATATTTTCTCCGAGTATGGTCATCTTG----CTACTTCATTTTCA
CATGAAAATGAA----------------GTGCCATGTTGATGTTGAAGGGTGATAAGCATCCATTATCAATG-TTACTTG
TAATCGCATTCGGCAATAAATGTGTTGTCATCTTATGATGTTTCCTATTCTGAGAGATACTCCCTCTGTAAACAGATATA
ATGCTTTAAAACATGGTGATGATAATCAATAAAACAAGCCAGTA---------ACCCAATATTGGAAGCCAATATCAAAT
TTATGTGGAGTATATCAGCAATATTTTCTTTAAAACATACTGCATCCATTCCAAAATAACTAGCCTACCAAAATGTCTTA
TATTTTGAAATGGAGGTAGTATTTGCAAATATCCGAAACTCTATGAGCAGATTGAGAAAACCAAGATAAAACAATTTTCT
CTTGAACTATGAAAGTGAACTCCAGTATATTGTAATATAAAATATGTTTGACAGTTTTCATTGT----------------
------------GAAGACATAAATAGTGAATACTTGTTGGAAATTAATAAAATGTGTTAAAAGGCCACAAAAATGACGGG
CCCACTCCAACAGATCTTCAGGCCAATCAGCATCGCGTTCTT--------------------------------------
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-------------------------------------TTGGTCATAAGATGGTAAAATTGGGAATAAGGGTCAATGTGTG
ATTGTCACTATTTGTGTTGTACCTCTACGGTGACGGTTGTGTGTGCACGGTACTCGTGGTACTACTAGATATTTTCTCCG
AGTGTAGGCATCTTGCTATACTTCATTTTCACATGAGAATGGATTTATCAGTTCGGTGCGATGTTGATGTTGAAGGGTGA
TAGCCAATGCGTCGTCAACATTATTT
>chr3A_1009
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------------------------------------------------GCGCGTGCCCGCCGGTATTAATACCCCAGAGA
GAGCCCACTGCAACCTCCACCCATCGGA--ACATTCAAGTT---CAAGCTCCCCCATCTCCATCACTACAACCAGCCACC
TC--------AAGCTTTGAAGCTCAGCTAGCTCGCCGCGACCGTCGAG--TCTCAAGTCTTGGGCCATGTCGAGCGGCGG
CGGGAAGCAGCAGCAGCAGCAGCAGGCGAAGAAGCCGGCGGCGGCGGAGGACATCGAGATCAAGAAGGTCTTCTCCCGCT
TCGACACGGACGGCGACGGCCGGATCTCGCCGTCGGAGCTGGCGGCCGTCTCCCGCGCCATCGCGCCGCCGGCCACCGAG
------TCCGCGCAGGGGCGGGAGGTGGCGTCCATGATGGACGAGCTCGACACCGACCGCGACGGCTACGTGGACCTCGG
CGAGTTCGCCGCCTTCCACGGCCGCGGCCGCGGGGAGCGCGAGCTGGACGCCGAGCTGCGCGACGCCTTCGACATCTACG
ACATCAACGGCGACGGCCGCATCTCCGTCGCCGAGCTCAGCAAGGTCCTCAGCCGCATCGGCGAGGGGTGCAGCACCGAG
GACTGCGAGAAGATGATCGCCTCCGTCGACGTCGACGGCGACGGCTGCGTCGGCTTCGACGAGTTCAAGAAGATGATGAC
CGGCGACGTCGCCGGCGCACCACCTCAACCCGAAGCGA---CCGCCGCCCCTGACAGCAACAAACCCAAA---GAGTGAT
ACATGC-----TTGCTTGTAAA-TTCGTAGTAATGTGAGGGGGGCGAAGGGAAGGTGT----------------------
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>chr3D_1338
AGATACTTTCTCCCGAGTGTGGGCATCTTGCTACTTCATTTTCACATGAGAATGGATTTATCAGTTCGGTCAGTGCGATG
TTGATGTTCAAGGGTGACACCCAATGCATCGTCAACCTTATTTGTAATCAGGCTCGGCAATACATGTGTTGTCATTTTGG
CGATGTTGAATAGTTTTAAGCATATGCTGTAAAAAGAATGATTTCATTAATAGTAGTTGTAAACAATTTTACACGCAACA
AATATTAGAATTTACTCCCTCTGTAGAGAAATACAAGAGTGTATAGATCACTACTTAGTGATTTAAATAAACGCTCTTAT
ATTTATTTACAGAGGGAGTAATATCTATATCTGTAATATCTATATCCATACCTACGTAATATCTATATCTATACCTACAG
AAAAATATTAAAAGGTAATATCTATACATATACCTACCTATTATTTGGCTTGTATGAACAAATTGAGAAAACCAAGATAA
AACAATTTTCTCATGAACTATGAAGGTGAAGATATAAATTTTTGACAATTTTCATTGTAAGATATAAATAGTGCATACTT
GTTAGAAACTAAGAAAATGTGTTTAAAGGCCACAGGAATAACGACCCACTCCGACTAATCTTCAGGCCAACCAGGCACCT
GCCCTCTCCTATAGAACGCCTTTAGTGCTCTTTTTGCGTAAACAGCCTCGCGCGCACAGCTAGATAGGCCGCACCTAAAC
CTGGCCATGGGCAGCTCGGTCCGGTCGGCCCTACCCGGCCCGGCCCGAAAAAGCCCGACCCGGCCTGACCTTGTCCACGG
GCCGGGCTCGAGCCTAGATTTTAAGCTCGACAGCCGGGCCAGGCCCGGGCCCATTATATTCGCGCATTAACGAAGAGGCC
CGGTGGGCTTTTAGTGTGATGGGTTGGGCTCGGGCCTGATTTTTAAGCCCGATGGCTGGGCCGGCCGGGCTCGGGCCAGG
GTTTTTTGCATCGGGCTTTGGTAGGCCCGGCCCGACAGATGGCCACGTATAGCCGCAGCCCATCACCATCCAAGTCGCTC
GCTCGCATTAAACTGCCTCGCTCACTCATTCGCAAAACTGCCAGTTTGACCAGCAGACCCGTGAGGGC------------
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------------------CGGGAGGTGGCGTCCATGATGGACGAGCTCGACACCGACCACGATGGCTACGTCGACCTCAT
CGAGTT--------------------------------------------------------------------------
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>SNPs
-SS-SS-SS-SSSSS-SS-SSSS--SS--SSSS---SS--SSS--SS-SS-SSSSSSSS-SSS-SSSSSSSSS--S-SS-
S-SSSS-SSSSSSSSS-S-SSSSSSSS-S---SS-S-SSSSS-SSSSSSSSSSSSSS-SSSSSSSSSSS-SS-SSSSSS-
SSSSSSS-SSSSS-S-SSS-SSSSSSS-S-S-SSS--SSS-SS-SSSS--SSS-SSSSSSSS-S-SSSSSSSSSSSSSS-
S-S-SSS-SSS-SS-SSSSSS-SSS----SS-SSSSSSS-SSSSSSS-SS--S-S-SS--S----SSSSSS-S--SSSSS
S--SS-S-SS-S-SSSS-SS--SSS-S--S--SSS-S-SSSSS-S-SSSSSSS--SSS-S-SSSSSSSS-S-SSSSSS-S
SSSS----SS--SSSS-SS--S--SSSS-S-SSSSSSSSSS-SSSSSSS--S-SSSSSS--SS-SSSSSS-SSSSSSSSS
SSS--S-SSSSSSS-S--S-SS--SSSSSSSSSSSSSSSS-S-S---SSS-SS---S-S-S-S-S-SSSSS--S-S-SSS
SSSSS--SSS-SSS--S-SSS-SS--SSSS--SSSSSSSSS-SSSSSSSSS-SSSS-SSSSSSSS--SSSSSSSSS---S
S-SSSS--SSSSS-SSS-SSSSSSSS-S-SSSSSS-S-S-SSS--SSSSSSSSSS--SS--S---S-SSSSSS-SSSSSS
-SSSS-S-SS-SSSSSS--SSS-SSSS--S-SSSSSSSSSSSS-S-SSSSSSSS-SSS-SSSSSS-SSSSS--SSS-SS-
SSSS-SSSS--SSSS-S-S-SSSS-S-SSSS-SSS--SSSSS--SS-SSSSSSSS-SSSSSS-S-SSSSSS-S-S-SSSS
SS---SSSSSSS-SSSSSSSS-SSSSSSSSSS-SSSSSSSSSSSSSS-S--SSSSSS-SSSSSSS-SSSSS-SSS-SSSS
SSSSSSSSSSSSSSSSSSSSSSSS----SS-S-SS-SSS-SSS-SSS---------------------------------
----------------------------------------------------------------------S---------
----S--S--------S--------S------------------------------------------------------
-S------------------------------------------------------------------------------
----------------------------------------------S-----S--------------S--S---S--SSS
SSSSSS-----------------------S--------------------------------------------------
---------S----------------------------------------------------------------------
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-----------------------------------------------------S--------------------------
-------------S-----------------------------------S------S--------------------SS-
SSSSSS----------------S--S----------------S-----SS-S----------------------------
-----S---SSSSSSSSSSSS----S-S------------------------------------------------S---
-------------------SS--------S-------------------SS---S-------SSSS--------------
----------S-SSSSSSSSSSSSSSSS----S----------------------SS--SSSSS-SS-S-SSS---S---
------SS----------S------------S--SSS-SSS--SSSSSSS-SSS--SSS---------------------
-----------SSSSSSSS-SSSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSS-S-S------S----SS------S-SS
-SSSSSSSSSSS--SS-S-SS---S-SSS---------------------------------------SS---SS-S---
-S-S-SS-S--SSSSSSSSSS--S--SSS-----------------S---------------------------------
----------------------S-S------------S-------S-------S---------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-----S----------S---------S------S-S----------S---------------S-----
--------S--SS-----------S-S---SSSSSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-SS-S---S-SSS----S-S-S--S---SSSS--------
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>forward_119
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-------------------TGTTCGTGAGCGTTGATCCA-----------------------------------------
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>reverse_2014
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-------------TTATCAGTTCGGTCGGTGCG-----------------------------------------------
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