>input_sequence_70817
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------------------------------------------------------ATGGCAGCCGCCGCCGCCCCCGATGC
CGGAGAGTGGTCCGCCGCTGCGCGGCTCCGCCTCGTGTGGCGCGTCGTGCGGGCGGCGGAGCTCCTAGCCCTGGCCTTCG
TCCTTTCCCGCTCCTTCCCCCGCCTCCCCTACGCCGCGTCTGCGGCCTCCTCTGCCCTCCGCCTCGCCGCCTCACTCCTC
CTCCAACCGCGCTCCATCTTCGTCATCGCCAACGCCATCGTGTTCCTCCTCTACGTCTTCTCGCGCCGCGACCCGTCGCC
ATCTTCCTCTGCCTCCTACCAGGACTCCCAGGACCAGTTCCTTTCCTTCACCGCCACACCGCTGCTGTCGCCATCGACCA
CCGAGGCGTCGGCTCTGGCGCCCGAGACGGACGCGGTGTTCGAGGACAAGCAGGCGGTGCACGTGACGGTGCGCGCCCCG
CGTCGGAGCAGATCGGAGAAAATCGGCGGCGGAAAACATGGCGGGAGGAGGAGGGCGGGATCGCCGGACATGCGTCGGTC
CGATTCGGAGAACGGGCGGCGGCGTCGGTCGACGTCGTCGGCGGCCCCAGAGGAATGCGGTGCGGAGGACGAGAAGGAGG
AGTTCCGGAGGGCAGTCGAGGCGTTCATCGCCAAGCAGCAGACGCGGTTTTACCGCGAGGAGTCCTTTGTCTTGGTCGAC
GGCGCCGGCGTCGGAGACGATGCTCAGGCGATCACCGTAGCTGTGAAGTGA-----------------------------
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>chr3B_1_TraesCS3B01G257600
TCTAAAATTTAATCTCCATCCGAGAGCATGCAAAGTCGAGCTCCATTTTTCATATCCGACAAAATAGGGAGTGTTGAAGT
AGAAATATATCTATCTTTGTTTGACGCCTTCTTCGCCATTTTTTCCAATAACTAGTGGATGTCTTTTTCAATGCATTTTT
TTTGCCAATAGAAACTCTTACGTTCATTTTTCTTAAGCACACACCATAGAACAATAGTTCTATGGTAAATTTCATTAATA
AAAAGTATGTTATATTGAGGAAGAAAAAAAGGATGAAGCTAAAAAGAAGATCCTACAAAAGGAAGAAATATCTTATCCAA
CTCCAGTTTTTGGGAACAA---GATCATCATGAAGTTAGAAGGTAGTACCTCCGTCCGGGATTATTAGGCCCCTTCTATT
TTGGATTGAAGTTTAACCAAAGATTTAATTAAACAAATGTAAATTATATGTCACAAAAATTATACTGCCGAAAACCTCTT
TCGAATACAAATCAAAAAATATACTTTTTATGGCATATACTTTATATTTTGTTAGTCAAATAGATAGTCAAACTTTGACT
CAAAATACGAGGGGGGCTAATAAACCCGGACGGAGGGAGTATGAGCTAGCCAAGACATGAATTCTGCAGAAAATTTGCTC
TTGATCTTTATTGCTAGAAGCTTAAGTTGCATTTTGAGAGTGAATCTCCAAAACTTTACTGCCCATTGCCGCTGCCTATA
ATCACATCAAATAATTACCAATTTCGAAAAATTATGAAACACTACCTACCAAACACTTGAATGG-TTTTTTTGAATATTT
TGAAGGCTCCCT-----ATATACTCCTGATACTTCCGCAGCGTCTATCTTCACGCTTCCCTAAACCCACTGGCACAGCAC
AGGCGTACCCACACTCTCTCCTCTCACTTCCCAACCCAAACCCCTGCACCTCTCCCTCCAAACCGAATCAAACACAAGCA
TCCAAAGAGCCGCTGCCGCCCACGCACTCTCTTCGCCTAGCCGC-----TCTCCATGGCAGCCGCCGCCGCCCCCGATGC
CGGAGAGTGGTCCGCCGCTGCGCGGCTCCGCCTCGTGTGGCGCGTCGTGCGGGCGGCGGAGCTCCTAGCCCTGGCCTTCG
TCCTTTCCCGCTCCTTCCCCCGCCTCCCCTACGCCGCGTCTGCGGCCTCCTCTGCCCTCCGCCTCGCCGCCTCACTCCTC
CTCCAACCGCGCTCCATCTTCGTCATCGCCAACGCCATCGTGTTCCTCCTCTACGTCTTCTCGCGCCGCGACCCGTCGCC
ATCTTCCTCTGCCTCCTACCAGGACTCCCAGGACCAGTTCCTTTCCTTCACCGCCACACCGCTGCTGTCGCCATCGACCA
CCGAGGCGTCGGCTCTGGCGCCCGAGACGGACGCGGTGTTCGAGGACAAGCAGGCGGTGCACGTGACGGTGCGCGCCCCG
CGTCGGAGCAGATCGGAGAAAATCGGCGGCGGAAAACATGGCGGGAGGAGGAGGGCGGGATCGCCGGACATGCGTCGGTC
CGATTCGGAGAACGGGCGGCGGCGTCGGTCGACGTCGTCGGCGGCCCCAGAGGAATGCGGTGCGGAGGACGAGAAGGAGG
AGTTCCGGAGGGCAGTCGAGGCGTTCATCGCCAAGCAGCAGACGCGGTTTTACCGCGAGGAGTCCTTTGTCTTGGTCGAC
GGCGCCGGCGTCGGAGACGATGCTCAGGCGATCACCGTAGCTGTGAAGTGACGAGGGAGTTGGCAACAGTGAGCGCGGGG
AGGGTGACGAGTGTGAAAGGATGGATCGGTGTGCAAAGAATTTGTTGGTGCCTTGTTTAGTGTACAAGTTTTGCCTTTTT
GCTTCTTGTCTTTCTAGCATCTCAATATGTTTCTTTTCTCCACTTGCTTTCGGGGCGTCTGTGATTGACTGATAGCTACC
GCCGATCGATGGACTAAATTACTCAATTTTAGACCTCCGTCGCTATATGGTGTCGGCCCACGACTCTCGTGCATCTCTGT
CTCTTAATTTATGACGCACGTACGAATTGGATGTTTATATTGGATTTTTATATGCTATATACAGGAGTCGAATTACTTCC
CGCGTAAAATGCATATTATCGTTGCCACGCGCATGACACACCGAATGCGTCAAACTCCAACGCGTGACCGCATTTGGTCC
GTTTGTGTAC-TGGTTTGAAACGGACAAAAATCATGGCTCAAAGTGTCGACACAAACGGATGGATGTTCTTCTCAGACCC
G-TTTTTGGCCTAAATTGGGCCGCGTTTGCGTCAGAACTGACAAGGTGCGGAAGCGCGGGACGCACACCCTTCTCCTTCT
CCCGACCCACTCGTCGGAGGCACAA-CATTCTCGTTTTCCTAATTTCCTCCCAAAAACCCTCCCGCCCTCTCCT---GCC
ATGGCCACCACCCCAAACGTCGCCGCTACCGCCATCCCAGCCACCACCGACGCCAATCCCGTGGCCTCGAAGAAGAAGAA
ACCCAAGAAGATGCTCACGTCAGCGCAGCTCACCCGAGAAAAGGCGAAGAGGGCAGGCCGGAGGGCCATTGATGCGGAGA
GGAAGGTCGTCGCCCA-GCCGCCGTCCACGTCGCCGCCGCGCAACACAAGGCCGCCATTGATGATAACGAGGCCCTCGTC
GC-AAGGCCACATAGACAGCGACACACAATGCCCTCCTCCTGCTAGGCTTCAACCAACCCACACCGACCATTACCGCTGC
CGCCATGGCCGAGGCGAGC
>chr3D_5
----AAATTTAATCTCCATCCGAGAGCATGTGAAGTCGAGCTCCCTTTTTAATATCCGACAAAATAGGTAGTGTTGAAAT
AGAAATATATCTTTCTTTGTTTGACTCCTTCTTCGCCATTTTTTCCAATAACTAGTGGATGG-TTTTTCAATGCAATTTT
TTTGCCAATATAAACTCTTGCGTTTGTCTTTCTTAAGCACACACCATAAAACAATAGTTCTATGGTAATTTTTATTAATA
AAAACTATGTTATATTGAGG----------------------------GATCCTACAAAAGGAAGAAATAGCTTATCCAA
CTCCAGTTTTTGGCGACTATAGGATCATCATGAAGTCAAAAGGTACTCCT------------------------------
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---------------------------------------TATGAGCTAGCCAAGACTTGAATTCTGCAGAAAATTTGCTC
TTGATCTTTATTGCTAGAAGCTTAAGTTCCTTTTTGAGAGTGAGGTGCTGTTTGGTTCTAGGTCAAATCATGCCATACTT
TGCCATGCAATATTGCCACACTTTCCTTAGATTTGGTTCTAGG-CCTACCAAACACTTGAATTTTTTTTTTTGAATATTT
TGAAGGCTCCCT-----ATATACTCCTGGTACTTCCGCAGCGTCTATCTTCACGCTTCCCTAAACCCACTGGCACAGCAC
AGGCCTACCCACA----CTCCTCTCACTTCCCAACCCAAACCCCTGCACCTCTCCCTCCAAACCGAATCAAACACAAGCA
TCCAAAGAGCCGCTGCCGCCCACGCCCTCTCTTCGCCTAGCCGC-----TCTCCATG---GCCGCCGCCGCCACCGATGC
CGGAGAGTGGTCCGCCGCTGCGCGGCTCCGCCTCGTGTGGCGCGTCGTGCGGGCGGCGGAGCTCCTAGGCCTGGCCGTCC
TCCTCTCCCGCTCCTTCCCCCGCCTCCCCTACGCCGCGTCTGCGGCCTCCTCTGCCCTCCGCCTCGCCGCCTCACTCCTC
CTCCACCCGCGCTCCATCTTCGTCATCGCCAACGCCATCGTGTTGCTCCTCTACGTCTTCTCGCGCCGCGACCCGTCGTC
CTCTTCCTCTGCCTCCGACCAGGACGCCCAGGACCAGTTCCTTTCCTTCACCGCCACACCGCTGCTGTCGCCATCGACCA
CAGAGGCGCCGGCTCTGGCGGTCGAGACGGACGCGGTGTTCGAGGACAAGCAGGCGGTGCACGTGACGGTGCGTGCCCCG
CGGCGGAGCAGGTCGGAGAAAATCGGCGCCGGAAAGCTGGGCG---GGAGGAGGGCTGGATCGCCGGACATGCGTTGGTC
CGATTCGGACAACGGGCGGAGGCGGCGGTCGACGTCGTCGGCGGCCCCAGAGGAATGCGGTGCGGAGGACGAGAAGGAGG
AGTTCCGGAAGGCAGTCGAGGCGTTCATCGCCAAGCAGCAGACGCGGTTTCACCGCGAGGAGTCCTTTGTCTTGGTCGAC
GGCGCCGGCGTCGGAGACGATGCTCAGGCGATCACCGTAGCTGTGAAGTGACGAGGGAGTT-GCAACAGTGAGCGCTGGG
AGGGTGACGAGTGTGAAAGGATGGATCGGTGTGCAAAGAATTTGTTGGTGCCTTGTTTAGTGTACAAGTTTGGCCTTTTT
GCTTCTTGTCTTTCTAGCATCTCAATATGTTTCTTTTCTCCACTTGCTTTCGGGGCGTCTGTGATTGACTGATAGCTACC
GCCGATCGATGGACTAGATTACTCAATTTTAGACTTCGGTCGCTGTATGGTGTCGGCCCACGACTCTCGTGCATCTCTGT
CTCTTAATTTATGACGCACGTACGAATTGGATCATTATATTGGATTTTTG-------TATACAAGAGTCGAATTACTTCC
CGTGTG-AATGCATATTATCGTTGCCACACGCATGATGCACAAAATGAGGCCAACTCCGTTGCGCTACCGCATTAGTCGT
TTCTGTTGGTTTGGTTCGAAACGTACAGAAAATACGGCTCAACGTGCCGATGTAAATGGATGAGTGTCCTTTCCTGTTTC
ATTTTCGGTCCCAATTTAGGCCGCGTTTGTGTCGAAACGAACAAGGTGCGGAAGCGTGGGACGCACACACTTGCGCCCCC
ACCCCCACTCACCTGTCGGGGCACACCATTCTCATTTTCCTTATTCCCTCACAAAAACCCTCCCGCCCTACCTCTCCGCC
ATGGCCACCACACCAAAT---------------------GCCGCTACCGCCGCCCGCCCCGTGGCCCC---GAAGAAGAA
ACCCGAGAAGGTGCTCACGCCGGCACAACTCGCCCGAGAAAAGGCGAAGAGGGCAGGCCGGAGGGACGTTGCTGCGAAGG
GGAAGGCCGCAGCCCAGGCCGCCGTCGACGCCGCCGCGGCGCAACACAAGGCCACCGTTGATGATAATGAGGCCCTCGTC
GCCAAGGCCACGCAGGCAGCGATGCAACATGCCCTCCTCTTGCTAGGGTTCAACCGACCCATGCCGGCCATTCTTA---C
CGCCATGGCCGCGGCG---
>chr3A_5
----AAATTTAATGTCCATCTAAGATCATGCGAAGTCGAGCTCCATTTTTATTATCCGACAAAATAGGGAGTGTTGAAAT
AGAAATATATCTATCTTTGTTTGACGTCTTCTTCGCCATTTTTTCCAATAACTAGTGGATGT-TTTTTCAATGCAA-TTT
TTTGCCAATATAAACTCCTGCGTTCGTTTTTCTTAAGCACACACCGTAGAACAATAGTTATATGGTAATTTTTATTAATA
AAAAGTATGTTATATTGAGGAAGAAAGAAAGGATGAAGCTAAAAAGAAGATCATACAAAAGGAAGAAATAGCTTATCCAA
CTCCAGTTTTTGGGAACAA---GATCATCATGCAGTTAGAAGGT------------------------------------
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-------------------------------------AGTATGAGCCAGCCAAGACTTGAATTCTGCAGAAAATTTGCTC
TTGATCTTTATTGCTAGAAGCTTAAGTTCCTTTTTGAGAGTGAATCTCCCAAAGTTTACTGCCCATTGGCGCTGCCTATA
ATCACATCAAAGAACTATCAATTTCGAAAAATTATGAAACACTACATGCCAAACACTTGAATA--TTTTTTTGAATATTT
TGAAGGCTCCCTTCCCTATATACTCCTGATACTTCCGCGGCGTCTA-CTTCACGCTTCCCTAAACCCACTGGCACAGCAC
AGGCGTGCCCACACTCTCTCCTCTCATTTCCCAACCCAAACCCCTGCACCTCTCCCTCCAAACCGAATCAAACACAAGCA
TCCAAAGAGCCGCTGCCACCCACGCACTCTCTTCGCCTAGCCGCGCCGGTCTCCATG---GCCGCCGTCGCCCCCGATGC
CGGAGAGTGGTCTGCCGCTGCGCGGCTCCGCCTCGTGTGGCGCGTCGTGCGGGCGGCGGAGCTCCTAGCCCTGTCCGTCG
TCCTCTCCCGCTCCTTCCTCCACCTCCCCTACGCCGCGTCTGCGGCCTCCTCTGCCCTCCGCCTCGCCGCCTCACTCCTC
CTCCACCCGCGCTCCATCTTCGTCATCGCCAACGCCATCGTGTTCCTCCTCTACGTCTTCTCGCGCCGCGACCCGTCGTC
CTCTTCCTCTGCCTCCGACCAGGACGCCCAGGACCAGTTCCTTTCCTTCACCGCCACACCGCTCCTGTCGCCATCGACCA
CAGAGGCGCCGGCTCTGGCGCCCGAGACGGACGCGGTGTTCGAGGACAAGCAGGCGGTGCACGTGACGGTGCGCGCCCCG
CGGCGGAGCAGGTCGGAGAAAATCGGCGCCGGAAAGCATGGCGGGAGGAGGAGGGCGGGATCGCCTGATATGCGTCGGTC
TGATTCGGAGAACGGCCAGAGGCGGCGGTCGACCTCGTCGGCGGCTCCAGAGGAATGCGGTGCGGAGGACGAGAAGGAGG
AGTTCCGGAGGGCAGTCGAGGCGTTCATCGCCAAGCAGCAGACGCGGTTTCACCGCGAGGAGTCATTTGTCTTGGTCGCC
GGCGCCGG------AGACGATGCTCAGGCGATCACCGTAGCTGTGAAGTGACGAGGGAGTTGCCAACAGTGAGCGCGGGG
AGGGTGACGAGTGTGAAAGGATGGATCGGTGTGCAAAGAATTTGTTGGTGCCTTGTTTAGTGTACAAGTTTTGCCTTTTT
GCTTCTTGTCTTTCTAGCATCTGAATATGTTTCTTTTCTCCACTTGCTTTCGGGGCGTCTGTGATTGACTGATAGCTACC
GCCGATCGATGGACTAGATTACTCAATTTTAGACCTTCGCCCCTACATGGTGTCGGCCCACGACTCTTGTGCAT------
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>SNPs
SSSS---------------------------S------------------S---------------------------S-
--------------------------------------------------------------S------------S----
----------S--------S-----S------------------------------------------S---S-------
--------------------------S-------------------------------------------S---------
---------------------------------------------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-----------------------
----------------------------S-S------------------S---S--------------------------
-----------S--S--S--------------------------------------------SS----------------
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---------------------------------------------------------SSS--------------------
----------------------------------------------------------------------------S---
----S---------------------------------------------------------------------------
-----S------------------------------------------------------------------------S-
S---------------S--------S------------------------------------------------------
-S------S-----------------------------------------------------------------------
--S--------S----------------S------S--------------------------------------------
-------------------S----S-------------------------------------------------------
--------------------------------------------------S-----------------------------
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----------------S---------------------------------------------------------------
--------------------------------SS---------------SSSSSSSS------S----------------
--S--SS---------------------S-------SS---SS----S-S-S------SSS---SS--------S-SSSS
S-S---SSSS------S------S---S---SS-S-------S---S---SSS---S-----SS---S---SS-S-SSS-
S----SS-S--S--S--S-----------S---SS---SS----------------S-----------S---SSS-SS-S
S--SS-S-S-S-S-SSSS--SSSS---------S-------S---S----S------------------SS-SS------
-----------S-----SSSSSSSSSSSSSSSSSSSSSS---S-S----S----SSS---------S-SSS---------
----S-----S--------S-S--S--S---S---------------------------------S-S---S----S--S
------S--SS---------------S---S------S---------------S--S----------S------------
-----------SS--S------SS--SS-----------S-------S-------S-----SS---S-----SSSSSSS-
-----------S----SSS
>forward_391
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---------------------------------------------------CCGTCCGGGATTATTAGGCC---------
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>reverse_2195
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----------------------------------TGGCTCAAAGTGTCGACACA--------------------------
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