>input_sequence_70772
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-----------------------------ATA-TTAAGGTGCCATCATGGGCATCGCCAGGCAGGGCACAAGCCTCCGAT
AATGGCTCCCCTCCGCTCTGCCATGCCAGCCTCATCCTTATTTAGCTTTGCTTTTGCTTCCCTCATAATTTTAACAAGTT
ATTTTTGGCAAACAAGAAGAGTTTCGAATCAATGAAGACATCGACGACGACGACGCCTGCTCTCACCGCCACGGTGCTGG
CGGCGGCGGCCTTGATCCTGGGCGCCCGCAGCGTCGACGCGGCGGTGGCAGACACGTGCAAGGCGGCCGCGGCCAGCGAC
GTGCGCGTCAACGTGGACCTGTGCATGTCGAAGCTGGGCAGCCACCGCGGCAGCCTCGAGGCGGCGGACGCCTGGGGCCT
GGCCAAGGTGGCCTCGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCGGCGGACGTCAAGGCCCAGGAGGCCGCGGACC
CCAACGTGCGCGTGAAGCCGGCGCTCGCCAGGTGCGGCACGCTCTACAAGGACGTGGGCATGTGGTTCGCGGGCGCGCAC
GACCAGATCAGCAACCACGCCTACCCCGCGGCCAAGCAGAGGCTGGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGC
CGCGTTCGCGGCCGCCGGCGTGACCCTGCCGCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATCG
CCGGCGCCATCACCAACCTCATCAAGTGA---------------------------------------------------
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>chr4B_1_TraesCS4B01G379600
TCTGACCTGAGGCCTGAGATCAAACCCACCGCAGAGCCCAAATAGCCCGTCGTTCTCGCTGTCACTCTGTCTCGCCTGCT
CCTCAGATCGGATGGATCCGTCGGCGTCGGCGTCG------CTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTG
CGGAGCCGGCGGCCGCAGTTCGGTCGGCCGGAGCGGGAGCGGAACCCGCCTCG---GCGGGGGAGGGA---GGCGTCGGG
GCCCAAGCCGTCGGAGGTGTACGGGTTCGTGGGGTCCATCACCGTGGTGACGGCGACGGCGGTGTACCTGGCGTGGGCCT
ACGCGCCGGAGCCGGCCCTCCGGTCGCTGGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTC
GCCATGGTCGCCCTCGCCCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTCGTCGCCACCCCTCCCCCCACCTCCTTCTC
CACCATCTTCGGTAACCACTTTCTCCGGCGACATTG-------------------------------------ATTGATG
CGCTCAATTTGTA-GTTAGTTTGCTCACCTTTCATCCACTTGTTGTTGCTCATTTGATCATTTA--------CATCCAT-
-------CCAGACGAGTACAGCCGCGAACGCCCCGGCGCCGCC---GCCGCGGTTCATGTGGATGCCGCGACGGCGCAAG
GAGATGAGGAGGAAGAAGAAGCGGAGAGGCCGATCGAGCCCATTTCGGACATCAGCATCCATCACATCAACAACCTCATG
TTTGGTGATCACTGACGACCCGCTCGCATCAAAATTCAGTTCCATTCCCCGCCGTCGCGACGATTTTTCTGTAACTATGA
TAGTAGCTGATAGTGCAGTAATGCTGTTCTTCTTCTTACAGTGCTTGCTCGCCAAATTCTGTTAAAGAAATATTTGCCTT
GTCTTAGTATACTGTGATTTCTCAGCAAGAAAGTTCTTGAGCTTCTTCTTGGGTCTATACATAGCCCAGTGGTGGATAAA
TGAATTGGTCCAAGAATGGGGATTGGAAAATA-TTAAGGTGCCATCATGGGCATCGCCAGGCAGGGCACAAGCCTCCGAT
AATGGCTCCCCTCCGCTCTGCCATGCCAGCCTCATCCTTATTTAGCTTTGCTTTTGCTTCCCTCATAATTTTAACAAGTT
ATTTTTGGCAAACAAGAAGAGTTTCGAATCAATGAAGACATCGACGACGACGACGCCTGCTCTCACCGCCACGGTGCTGG
CGGCGGCGGCCTTGATCCTGGGCGCCCGCAGCGTCGACGCGGCGGTGGCAGACACGTGCAAGGCGGCCGCGGCCAGCGAC
GTGCGCGTCAACGTGGACCTGTGCATGTCGAAGCTGGGCAGCCACCGCGGCAGCCTCGAGGCGGCGGACGCCTGGGGCCT
GGCCAAGGTGGCCTCGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCGGCGGACGTCAAGGCCCAGGAGGCCGCGGACC
CCAACGTGCGCGTGAAGCCGGCGCTCGCCAGGTGCGGCACGCTCTACAAGGACGTGGGCATGTGGTTCGCGGGCGCGCAC
GACCAGATCAGCAACCACGCCTACCCCGCGGCCAAGCAGAGGCTGGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGC
CGCGTTCGCGGCCGCCGGCGTGACCCTGCCGCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATCG
CCGGCGCCATCACCAACCTCATCAAGTGACTTCTCCTTTTCTTCAGCTA---------AGTACAGTAGCATCTAAATAGC
TGTTGGCACGGCGGTGGCCTCGTTTCTTGACATTTTTTTTAGTCATATTAGCGTTGTTGTAATCGCGCCCCGCATTCGGA
AGAACCCGGCAAGTTGAGAAATCATTTGATTTGATTGGACAAAATGGCGATCGC-----CATCATCATCATCAAACACTA
GCAGTAGAGCTACAAA--------------CT----TTCCATGAAACAAAACTGTGTATGTGTGCAATGCAAAGAAATAG
GAACAAGACGCCATGG----------ATTAGCATGCCCAGACCCTCTTCTTTGGGAGGAGATCTTTGGTCTTGATCTGGT
CGATCCTCGCCGCGATGATGAAGTCGTTGGCGCTCAGCCCACCTGCATAAAATTTCAGTTCAAT---------------T
CAGCTCAGTTCACCGATGAATCCATCGTTCATGGAGAAGCACACCACAGTTCATTGTGGCAGGGCAGAAGCAGAAGAGAG
AAGAGGTTAACGCCGACTGACCTACGGAGGGCGTGCAGAGCTGTGCCCTGACTTGGTTGGGCGGCTCGAAGAGGAGCGCG
GCGGGGGCATGGCCGGCGCCGTCGAGCGCCTTGCCGATCCTGGCGATGAGCTCGTCGCCGCAGGCCTGGTCGCGGACCTT
CCAGACGCACTCGAGCTTGAGCACGTCGGAGTCGCCCTTGCCGGGGAAGAGGAGGCGCCATCCGACGACCTTGAAGAGCA
GCCTGCGGGCGTCCTCCTCGGAGAGCGGCGCCGGGTGGGCTTCGAGCGGGACGCGGGAGAGGGAGAGCACGGAGAGCGTG
GGGATGAGGATGCGGTGCAGCGTGTCCACGTTGCCCAGCGTCTTCTCCCCGAAGTTGCTCGCGATCTCCTCCGGGAACGG
GTCCCGCGCGCCGAAGTCCCCCAGGATGTCCGCCATCGCCACCACCTTCCTGCTGCTCCGGTGGCCGCTGGCGGTGCCGC
TGGTGGTGGTGAAGAGGAGGCTTCGCATGGCGCCGGCGGTGGCGGT
>chrUn_84
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---CAGATCGGATGGATCCGTCGGCGGCGGCGTCG------CTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTG
CGGAGCCGGCGGCCGCAGTTCGGTCGCCCCGAGCGGGAGCGGCAGCGGAACCCGAAGCGGGGGAGGGAGCCGGCGGCGGG
GCCCAAGCCGTCGGAGGTGTACGGCTTCGTGGGGTCCATCACCGTGGTGATCGCGACGGCGGTGTACCTGGCGTGGGCCT
ACACGCCGGAGCCGGCGCTCCGCTCGCTCGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTC
GCCATGGTCGCCCTCGCGCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTCGTCGCCACCCCTGCCCCCACCTCCTTCTC
CACCATCTTCGGTAACCATTTTCTATGGCGACATTG-------------------------------------ATTGATG
CGCTCAATTTGCTGGTTAATTTGCTCATCTTGCATCCATTTGTTGTTGCTTATT-GATCATTTACATCCATCCATCCAT-
-------CCAGACGAGTACAGCCGCGAACGCCCCGCCGCCGCCACCGTGCCG------GTTGATGCCGCAACGGCGCAAG
AAGATGAGGAGGAAGAAGAAGCGGAGAGGCCGATCGAGCCCATTTCGGACATCAGCATCCATCACATCAACAACCTCATG
TTTGGTGATCACTGACGACCAGCTCGCATCAA--TTCAGCTCCATTCCCCACCGTTGCGACGATTTTTCTGTGACTATGA
---TAGCTGATAGTGCAGTGGTGCTGTTCTTCT---TACAGTGCTTGCTCGCCAAATTCTGTTAAAGAAATATTTGTCTT
GTA--AGTATACTGTGATTTTTTAGCAAGAAAGTTCTTGAGCTTC----TGAGTCTATACATAGCCCAGTGGTTGATAAA
TGAATTAGTCCAAAAATGGGGATTGGATACTA-AGAAGC------CATGGGCATCGGCAGGCAGGGCAGAAGCCTCCGAC
AATGGCTCCCCTCCGCTCTGCCATGCCAGTCTCATCCTTATTTAGCTTAG--TTTGCTTCCCTCATAATTTTAACAAGTT
ATTTTTGGCAAACAAGAAGACTTTCGAATCAATGAAGACAGCGACGACGATGACGACGGCCCTCGCCGT---CGTGCTGG
CGGCGCTGGCCTTGATCATGGGCGCCCGCACCGTCGACGCGGCGGTGGCGGACACATGCAAGGCGGCCGCGGCCAGCGAC
GTGCGCGTCAACGTGGACCTGTGCATGTCGAAGCTCGGCAGCCACCGCGGCAGCCTCGAGGCGGCGGACGCCTGGGGCCT
GGCCAAGGTGGCCTCGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCCGCCGACATCAAGGCCCAGGAGGCCGCCGACC
CCAACGTGCGCATGAAACCCGCGCTCGCCAAGTGCGGCACGCTCTACAAGGACGTGGGCATGTGCTTCGCGGGCGCGCAC
GACCAGATCAACAACCACGCCTACCCCGCGGCCAAGCAGAGGCTCGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGC
CGCGTTCGCGGCCGCCGGCGTGACCCTGCCTCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATAG
CCGGCGCCATCACCAACCTTATCAAGTGATCTCTTCCTTTCTTCAGCGAGTACAGTTGAGTACAGTAGCATCTAAATAGC
TATTGGCATGACGGTGAACTCGTTTCTTGACAATTTTTGTAGCTGT-A-AGTGTTGTTGTAATCGTGCCTCGCATTCGGA
AGAACCCAACAAGTTGAGAAATCATTTGATTGGA-----CAAAATGGCGA-CGC-----CATCATCATCATCAAACACTA
GCAGTAGAGCTACAAACATGGATCCATTGGCT----TTCCATGAAACAAAACTGTGTGTGTGTATGC-------AAAGAG
GAGCAAGAAGAGGGGAATCTGCGGCCATTAGCATGCCCAGACCCTCTTCTTTGGGAGGAGATCTTTGGTCTTGATCTGGT
CGATCCTCGCCGCGATGATGAAGTCGTTGGCGCTCAGCCCGCCTGCAC-AAATGTCAGTCCAATTCATATCAGTTCAGCT
CAG-----TTCGCCGATGAATCCATCATCCATGGAGAAGCACACCACAGCAGCTCATTGCGGCGG---AGCAGAAGAGAG
AAGAGGCTACTGTA-ACTGACCTACGGACGGCGTGTAGAGCTGGGCCCTGACTTGGTTGGGCGCCTCGAACCGGAGCGCG
GCGGGGGCGTGGCCGGCGCCGTCGAGCGCCTTGTTGATCCTGGCGACGAGCTCGTCGCCGCAGGCCTGGTCGCGGACCTT
CCAGACGCACTCGAGCTTGAGCACGTCGGAGTCGCCCTTGCTGGGGAAGAGGAGCCGCCAGCCGACCACCTTGAAGAGCA
GCCTGCGGGCGTCCTCCTCGGAGAGCGGGGCCGGGTCGGCGTCGAGCGGGACGCGGGAGAGGGAGAGCACGGAGAGCGTG
GGGATGAGGATGCGGTGCAGCGTGTCCACGTTGCCCAGCGTCTTCTCCCCGAAGTTGCTCGCGATCTCCTCCGGGAACGG
GTCCCGCGCGCCGAAGTCGCCCAGGATGTCCGCCATCGCCACCACCTTGCGAGTGCTCCGGTGACCGCTGGTGGTGCTGG
TGGTGGTGCCGAAGAGGAGGTTCCGCATGGCG--------------
>chr5A_84
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---CAGATCGGATGGATCCGTCGGCGGCGGCGTCGGCGTCGCTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTG
CGGAGCCGGCGGCCGCAGTTCGGGCGGCCGGAGCGGGAGCGGCAGCGGAACCCGAAGCGGGGGAGGGAGCCGGCGGCGGG
GCCCAAGCCGTCGGAGGTGTACGGGTTCGTGGGGTCCATCACCGTGGTGATCGCGACGGCGGTGTACCTGGCGTGGGCCT
ACACGCCGGAGCCGGTGCTCCGCTCGCTGGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTC
GCCATGGTCGCCCTCGCGCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTGGTCGCCACCCCTCCCCCCACCTCCTTCTC
CACCATCTTCGGTTCGTCGTCTACCACCATCTTCACTTCAGCAACCAAATTACTTCTGCTCTCTAGCTACAACATTGATG
CTCTCAAT-------------------------------TTGTTGTTGCTCATTTGATCATTTC--------CATCCATT
CATCCATCCAGATGAGTACAGCCGCGAGCGCCCCGCCGCCGCC---GTGCCG------GTTGATGCCGCGACGGCACAAG
AAGAGGAGGAAGAAGAAGAAGCGGAGAGGCCGATCGAGCCTATTTCAGACATCAGCATCCATCACATCAACAACCTCATG
TTTGGTGATCACTGACGACC----------AA--TTCAGCTCCATTCCCCACCGTTGCGATGATTTTTCTGTCACT---A
TGGTAGCTGATAGTGCAGTAGTGCTGTTCTTCT---TACAGTGCTTGCTCACCAAATTCTGTTAAAGAAATGTTTGTCTT
GTA--AGCATACTGTGATTTTTCAGCAAGAAAGTTGTTGAGCTTCT---TGAGTCTATACATAGCCCAGTGGTGGATAAA
TGAATTAGTCCCAAAATGGGGATCGGAATATTGAGAAGC------CATGGGCATCGCCAGGCAGGGCAGAAGACTCCGAT
AATGGCTCTTCTCCGCTCTGCCATGCCAGCCTCATCCTTATTTGGCTT------TGCTTCCCTCATAATTTTAACAAGTT
ATTTTTGGCAAACAAGAAGACTTCTGAATCAATGAAGACAGCGACGACGATGACGACGGCTCTAT---CCACCGTGCTGG
CGGCGGCGGCCTTGATCCTGAGCGCCCGCACCGTCAACGCGGCGGTGGCGGACACGTGCAAGGCGGCCGCGGCCAGTGAC
GTGCGCGTCAACGTGGAGCTGTGCATGTCAAAGCTCGGCAGCCACCGCGACAGCCTCGAGGCGGCGGACGCCCGGGGCCT
GGCCAAGGTGGCCTCGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCCGCCGACGTCAAGGCCCAGGAGGCCGCCGACC
CCAATGTGCGCATGAAGCCGGCGCTCGCCAAGTGCGCCACGCTCTACAAGGACGTGGGCATGTGCTTCGCCAACGCGCAC
GACCAGATCAACAACCACGCCTACCCCGCGGCCAAGCAGAGGCTCGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGC
CGCGTTCGCGACCGCCGGCGTGACCCTGCCTCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATCG
CCGGCGCCATCACCAACCTCATCAAGTGATCTCTTTC-TTCTTCAGCAAGTACAGAT-----CAGTAGCATTTAAATAGC
TAATGAA---------------TTTCTTGACATTTTAGTAATTATACA-AGTGTTGTTGTAATCGTGCCTCGCATTCGGA
AGAACCTAAGAAGTTGAGAAATCATTTGATTTGATTGG-CAAAATGGCGATGGCATCATCATCATCGTCATTAAACACTA
GGGGTGGAGCTACAATGGTGGATAGGTTGGCTTCCATTCCATGAAACAAAACTGTGTATGTATGCAATGCAAAGAAAGAG
GAACAAGATGGCATGGGCGGTC-GCCATTAGCATGCCCAGACCCTCTTCTTTGGGAGGAGATCTTTGGTCTTGATCTGGT
CGATCCTCGCGGCGATGATGAAGTCGTTGGCGCTCAGCCCACCTGCAC-AAATTTCAGATCAGT---------------T
CAG-----TTCACCGATGAATCCATCATCCATGGAGAAGCACACCACAGCAGCTCATTGCGTTGG---AGCACAAGAGAG
AAGAGGGTACTATA-ACTGACCTACGGAGGGCGTGTAGAGCTGGGCCCTGACTTGGTTGGGCGCCTCGAACTGGAGCGCG
GCGGGGGCATGGCCGGCGCCGTCGAGGGTCTTGTTGATCCTGGCGATGAGCTCGTCGCCGCAGGCCTGGTCGCGGACCTT
CCAGACGCACTCGAGCTTGAGCACGTCGGAGTCGCCCTTGCTGGGGAAGAGGAGCCGCCATCCGACCACCTTGAAGAGCA
GCTTGCGGGCGTCCTCCTCGGAGAGCGGCGCGGGGTCGGCGTCGAGCGGCACGCGGGAGAGCGAGAGCACGGAGAGCGTG
GGAATGAGGATGCGGTGCAGCGTGTCCACGTTGCCCAGCGTCTTCTCCCCGAAGTTGCTCGCGATCTCCTCCGGGAACGG
GTCCCGCGCCCCGAAGTCGCCCAGGATGTCCGCCATCGCCACCACCTT--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------S-----------------------------------------------------
------------------------------------------S-S-S-SSS-S----------------------S----
--------------------------------------------------SS----------------------------
--S-------------S-----S---------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------S------S------------------------------------------------------
-----------SS-----S--------S---S------S-----------------------------------------
-----------------------------------S-----------SSS--SSSSSS--S-------------------
S-------------------------------------------------------------------------------
--------------------S-----------SS-----S----------S----S----------------S-------
-S------------------S------------SSS----------------------------------------S---
--SSS---------------S-------------------------SSS--S----------------------------
------S------S-------------------SS---SSSSSSS-----------------------S-----------
------------------------------------------------S-SS----------------------------
--------------------S-------------------S---------S----S-S------S-------S-------
------------------------------S------------------S------------------------------
-----------------------------------S--------------------------------------------
------------------------------------------------S--S-----------------------S----
-----------S------------------S---------------------------------S---------------
----------S---------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
-----------------------------SS---S-S----------S--------------------------------
-S------S-S-----SS-------------------------SS-SSS--S-------------S---S----------
-------SS-----------------------------S-----------------------------------------
-----------------------------------------------------------------------------S--
--------S-S---------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
---SSSSS------------------S-S--------------------SSSS-SS-S--S-S-SSSS------------
------S--SS-SSS--------------------S-------S-------------------S------SS--------
---------------------------------SS---------------------------------------------
-----------------------------------------S------------S-----------S-------------
------------------------------------S---S---------------------------------------
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------------------S-----------------------------S-SSS----------S-------S-----S-S
--------SS----------S-S---------SSSSSSSSSSSSSS
>forward_36
----------------AGATCAAACCCACCGCAGAG--------------------------------------------
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>reverse_2091
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----------CCATGGATTAGCATGCCCAGA-------------------------------------------------
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