>input_sequence_70762
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACGCCTCTCTCCCCTCCCCGCCAGCCAGCCAGCCGCCAGAGGAGGAGGAGGGGAAAGTGG-------ATCGACGATGAT
GTGGGGAATAGCAGCCGCCGTGGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCGGAGCTCCTCGCGTGCGACCGCG
CCCCGACGCCGCCGACCGCCGCCGCG---GTCGTCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCT
GCGTCCGCGCGGGTCGCTGTTCCGTTTCCTCCCCTGCCTTCTCCCCCAGTCTTCCCCTC---------CCAAAGAATCTC
CTCCTTCCTTGGATAGCAATCCC----CGGTTTC-------GATTCGGGATCACGACGGCG---------TCTTGAACTG
TTTTGTACTACTTCCTGCTGC----TTTCGCAGGAATCCTCGTCGTCGAGCGGCCGG------GACGACAGGTTCGCGCC
GAGGTTCGACGGGCTGCGGTTCGTCGAGACGCTCGTCACGGCGCACCGCTGAAATCGCCGGAAGATCGACCCGTCGGCCG
GGCGGCTCCCAGCCGGCACTGTTCATCAGGGGATTCTTTCCTACCGCCCTCTTCATGCGATTCGCGACAAGAGGCTAGCT
GCTACACGGTTAATTCGGCGATTGGTGGCCAATATGTTGCCAAATTTTTGCTAGGACAAAATTTGAGATTTTTCGTTTCT
TTCTTCTTCTTTTCCTAGTGATGATGGTCGTCCTGTTGTTGAGTGATGC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>chr1A_1_TraesCS1A01G278500
GATGAACTCATAGATGGATCTTGGTGAAACTGTAGGAAAAATTTTAATTTTCTGCAACGTTCCCCAACAGTAAGATGGGT
CAACTATTGATAAACTAGTACATATTTAAAACTGAATATTGTACATGCCGGCTAAGACTAGCCACAGTGGGAGTAACTTC
AGCAGTAACTTCAAGTTCAACTCAACAAATTTGTCTATGTGGCAATGAGTTAATGAAGAGAGAGATAGTTCTAGTAACTT
ATCTAGTTACTGTAACATCACATGTCCCAATGGAGTATGAGTCTATAACCTAATAAATGGAGCTTTGCATGACACCCACT
ACGAAGGTAGTAACATAGTCTATAACCTCTCTCTCAGTTTACAGGGCGTGCGCGTGCCCCTAGGTCGTTAATTTGACCAA
CTTAATACAAGTTATATATTATAAAAAATATACCAATATAAACTTCAGATGCTCTATTTTCAAACCGTATAATTTTTGTG
TTATATAGTTTATATTAAGGTGATAAAATTGGCAACCTAGGTATACGCGTAGGACTTATAAACTGAAACAGAGGTAGTAA
TGTATGTTACTCTTCATTGTGGCTAGTCTAAGAGGTTGGTTGTAGATGACATGTCAACTTTTTATAGCCGACTGTTGGCT
GTATTATTAACCATGCTCTTAGCTGTGATAGTCTTCATGTGGAGGTTGGGGTGGAGTTGAGAGGGAGAAGCATGGTAGAT
TTTTCGCGTTTGCTTCCTGTCGTAGGTTGTTTAGTTTGGATGCTTGGGTTTTCTTTAATGAAAATCGGAAGGGGACGTCC
TTCTTTTATAAAAAAAACAGGGAGCAAGATTTTCTTTTGAGAAAGTAAAAAGTCCTCGTTACATTTTTCGTTTGAGGAAC
AAGTCCTCGTTACATGAGCCCTGTGCAGTCCGGAACTACAAAAGCCCAGAAGCAAAGACGAAT-----------------
--------------------CTTGCCGTCGGCACGGTTCCAGCCCGCCAAAGAGATTCCAGCGTGCCGCCAGCGTTC---
-ACGCCTCTCTCCCCTCCCCGCCAGCCAGCCAGCCGCCAGAGGAGGAGGAGGGGAAAGTGG-------ATCGACGATGAT
GTGGGGAATAGCAGCCGCCGTGGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCGGAGCTCCTCGCGTGCGACCGCG
CCCCGACGCCGCCGACCGCCGCCGCG---GTCGTCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCT
GCGTCCGCGCGGGTCGCTGTTCCGTTTCCTCCCCTGCCTTCTCCCCCAGTCTTCCCCTC---------CCAAAGAATCTC
CTCCTTCCTTGGATAGCAATCCC----CGGTTTC-------GATTCGGGATCACGACGGCG---------TCTTGAACTG
TTTTGTACTACTTCCTGCTGC----TTTCGCAGGAATCCTCGTCGTCGAGCGGCCGG------GACGACAGGTTCGCGCC
GAGGTTCGACGGGCTGCGGTTCGTCGAGACGCTCGTCACGGCGCACCGCTGAAATCGCCGGAAGATCGACCCGTCGGCCG
GGCGGCTCCCAGCCGGCACTGTTCATCAGGGGATTCTTTCCTACCGCCCTCTTCATGCGATTCGCGACAAGAGGCTAGCT
GCTACACGGTTAATTCGGCGATTGGTGGCCAATATGTTGCCAAATTTTTGCTAGGACAAAATTTGAGATTTTTCGTTTCT
TTCTTCTTCTTTTCCTAGTGATGATGGTCGTCCTGTTGTTGAGTGATGCGGTTGAATTGGAACCTTCAAGTGGCATGTGA
TGATTGTATGTGCTTGTGCTAGCATTGGTTCTTTCCCTGATTTGTTGTGCAAGCACGATGTGCTATGATTTCACCTCCAA
ACTTGCCATTCTCGTG-------TGTTGTCTTTTGTGTGTGGTCGGTCTTGTTCTGGAGCAAAACACTCGGTAGATGCTT
TCTGAAATGAAAATCGGTAGATGCCAGACACCATTTAAATGAGCAAAACACTCAACCATCCGTGCTAGCGTAAGAGGTAA
AACCAGATGCATCATTTTACCGACTCCAGCCTCCAGGAATGATTGTGCATGTTCGGTTCAAGTATACTCCTTTTTTTTTT
AAAAGGAGGCGTGCCCCCGGGTCCCGGGCTCTGCATCTGAATGATGCATGCAGCAATATTATTAAAAGTCTT-AAAAAAC
AAATAGTATCC------------CTCGCAAAA-GGAGCAGGATGGCAAAGCCATAAAAGACCTCAAGATTACAACCGATG
ATGATAACAGGACTAGAGACCTAAACTCCTATCCTGTTAAGCGACCTTCATCCAAATTGCTTGAATATAACCCGTGCTAC
CATCTTCCATTGGTTGCACCCAGTAACCAGCGGCTCCCTGGATTCCGTAGGAGTGAGTAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAGTTTAAAAATTGTTGCCCGTTAAAGATCATATCGTTCCTGCAGTTTCATATA
GCCCAC-AAAAAAGCACATATTCCAACTCGAAGATGACTCGCAGTATTGCGATCCACCCCATCTAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGCGCCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAGAGGTGTTGTATTGTTTCATTATTATCACAAAAACAATATCGTGAGCTGCCTACCCAATGTCGTTTTAACAGATT
GTCTTTGGTGAGGATCACTTGTTTATACACG
>chr1B_839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGCAAGTAAAAAGTCCTCGTTACTTTTTGTTTTTTAGTAAA
AAGTCCTCGTTACATGATCCCTGTGCAGTCCGGAACTACAAAAGCCCAGAAGGAAAGACGAAACTTCCCGCAACCATCTC
ACGGCCTATACAATACGCGGCTTACCGTCGGCACGGTT-CAGCCCGCCAAAGAGATTCCAGCGTGCCGCCAGCGTTC---
-ACGCCTCTCCCCCCTTTCCAG--------CCA--GCCACCAGAGCAGAAGGGGAAAGTGG-------ATCGACGATGAT
GTGGGGAATAGCAACCGCGGTGGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCGTGCGACTGCG
CCCCGACGGCGCCGACCGCCGC---------CGTCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCT
GCGCCTGCGCGGATCGCTGTTTCGTTTCCTCCCCCGCCTTCTCCCCCAATCTTCCCCTC---------CCAAAGAGTCTC
CTCCTTCCTTGGATAGCAATCCC----CGGTTTTGATTTGGGATTCTGGATCACGACGGCG---------TCTTGAACTG
CTTTGTACCTCG---TGCTGC----TTTCGCAGGAATCCTCGTCTTCTAGCGGCCGG------GGCGAGAGGTTCGCGCC
GAGGTTCGACGGGCTGCGGTTCATCGAGACGCTCGTCACGGCGCACCGCTGAAGACTCCGGAAGCTCGTCCCGTCGTCCG
GGCGGCTCCCAGCCGACCCTGTTCATCAGGGGATTCTTTCCTACCGCCCTCTTCATGCGATTCGCGAGAAGAGGCTAGCT
GCTAGACGGTTAATTCGGCGATTGGTGGCCAATATGTTGCCAAATTTTTGCTAGGACAAA--TTGAGAGTTTTGGTTTCT
TTCTTCTTCTTTTCCTGGTGATGATGATCGTCCTATTGTTGAGTGATGCGGTTGAATTGGAACCTTCAAGTGGCATGTGA
TGATTGTATGTGCCTGTGCTAGCATTGGTTCTTTACCTGATTTGTTGTGCAAGCATGATGTGATATGATTTCACCTCCAA
ACTTGCCATTCTATGTGTTGTCTTGTTGTCTTCTGTGTGTGGTCGGTCTTGTTCTGGAGC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>chr1D_944
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CTTGCCGTCAGCACGGTTCCAGCCCACCAGAGAGATTCCAGCGTGCCGCCAGCGTTCGTT
CACACCCCTCTCCCCTG--CAG--------CCA--GCCGCCAGAGGAGCAGGGGAAAGTGG-------ATCGACGATGAT
CTGGGGGGTCGCAGCCGCCGTCGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCGTGCGACTGCG
CCCCGACGGCGCCGACCGCCGCCGCCGCCGTCGTCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCT
GGGCCTCCGCGGGTCGCTGTCTCGTTTCCTCCCCTGCCTTCTCCCCCAATCTTCCCCTC---------CCAACGAACCTC
CTCCTTCCTT-GATAGCAACCCC----CGGTTTC-------GATTCGGGATCACGACGGCG---------TCTTGAGCTG
TTTTGTGCTTG---CTGCAGC----TTTCGCAGGAATCCTCGTCGTCGAGCGGCCGG------GACGACAGGTTCGCGCC
GAGGTTCGACGGGCTGCGGTTCATCCAGACGCTCGTCACGGCGCACCGCTGAAGTCGCCGGAAGCTCGACCCATCGGCCG
GGCGGCTCCCAGCCGACCCTGTTCCTCAGGGGATTCTTTCCTGCCGCACTCTTCATGCGATTCGCGAGAAGAGGCTATCT
GCTAGACGGTTAATTCGGCGATTGGCGGCGACTATGCTG-CAAAATTTTGCTAGGATAAA--TTGAGATTTTTTGTTTCT
TTCTTC---TTTTCCTGGTGATGATGATCGTCCTATTGTTGACTGATGCCGTTGAATTGAAACCTTCAAGTGACATGTGA
TGAGTGTATGTGCCTGTGCTAGCATTGGTTCTTTACCTGATTTGTTGTGCAAGC----------ATGATTTCACCTCCAA
ACTTGCCACTCTATGTGTTGCCTTGTTGTCTTCTGTGTGTGGTCGGTCTTGTTCTGGAGC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>chr2B_992
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCAGCCTTC---
-ACACCTCTCCCCCTCG--CTCCGTCCCTACCA--GCCAGAGGAGGAGGAGGGGAAAGTGGCTGCTGGATCGACGATGAT
GTGGGGCGTCGCAGCCGCCGTCGCCTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCCTGCGACTGCG
CCCCGACGGAGCCGCCCGCCGCCGTCGCCA------TCGGCAGATGCGACGAGTTCCTCCTCCGCCAGCGGGTACGGATC
ACGGCTCCCC-----------------CCTCACCTGCCTTCTCCCTAATTCCTCCCCTCCCTCCCTCCCCAAAGAATCTC
CTCCTAC----GATAGCAATCCGCTCTCGATTTT-------GATTTGGGATCACGACGGCACGGACGGCTTCTTGGACTG
CTCTGTTCTTA---CATGCTCTGCTTTCCGCAGGATTCCTCGGCGTCGAGCGGGGCCAGCGGCGACGACAAGTTCGCGCC
GCGGTTCGACGGGCTGCGCTTCATCGAGACGCTCGTCACGGCGCACCGCTGAAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>chr2A_2043
AAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TATCTTCTTTTTTTTTGG
AAAAGGAGGCGTGCCCCCGGC-------CTCTGCATCTAAATGATGCATGCAGCCATATTATTAAAAGTCTT-GAAAAAC
AAATAGTATCCAAAGTATTACAGCTCGCAAAA-GGAGCACGATGACAAAGCCATAAAAGACCTTAAGATTACAACCGATG
ATGATAACATGACTAGAGACCTAAACTCCTATCCTGTTAAGCGACCGCCATCCAAATCGGTTGAATATAATCCGTGCTAC
CATCTCCCATTGGTTGCACCCAGTGACCAGCAGCTTCCTGGATTCCGTAGGAGTGAGTAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAATTTAAAAATTGTTGCTTGTTAAAGATCATATCGTTCCTGCAGTTCCATATA
GCCCAC-AAAAAAGCACATATTCCAACTCGAATATGACTCGTAGTATTGCGATCCACCCCATCTAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGCGCCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAAAGGTGTTGTATTGTTACATTATTATCACAAAAACAACATCGTGAGCTGCCTACCCAATGTCGTTTTAACAGATT
GTCTTTGATGAGA-TCACTTGTTTAT-----
>chr3A_2053
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CTTTTTTTTGG
AAAAGAAGGCGTGCCCCCGGC-------CTCTGCATCTGAATGATGCATGCATCCATATTATTAAAAGTCTC-GAAAAAC
AAATAGTATCCAAAGTATTACAGCTCGCAAAAAGGAACGGGATGACAAAGCCATAAAAGACCTCAAGATTACAACCGATG
ATGGTAACAGGACTAGAGACCTAAACTCCTATCCTTTTAAGCGTCCGTCATCCAAATCGGTTGAATATAACCCGTGCTAC
CATCTCCCATTGGTTGCACCCAATAACCAGCGGCTCCCTGGATTCCGTAGGAGTGAGTAAGGACCATGTACGGATCCATG
CAGTAGCTCTAAAGATAACCTGCAAGAAGTTTAAAAATTGTTGCCTGTTAAAGATCATATCGTTCCTGCAGTTTCATATA
GCCCAC-AAAAAAGCACATATTCCAACTCGAATATGACTCGTAGTATTGCGATCCACCCCATCTAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAATCTATATGAATAGTGCGCCATAAAAGTTTTGCCAAAGGACAATCG
ATGAAAAGGTGTTGTATTGTTTCATTATTATCACAAAAACAATATCGTGAGCTGCCTACCCAATGTCGTTTTAACAGATT
GTCTTTGGTGAGTATCACTTGTTTAT-----
>chr5A_2053
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CTTTTTTTTGG
AAAAGGAGGCGTGCCCCCGGC-------CTCTGCATCTGAACGATGCATGCAGCCATATTATTAAAAGTCTT-GAAAAAC
AAATAGTATCCAAAGTATTACAGCTCGCAAAA-GGAGCAGGATGACAAAGCAATAAAAGACCTCAAGATTACAACCGATG
ATGATAACATGACTAGAGACCTAAACTCCTATCCTGTTAAGCGACCGCCATCCAAATCAGTTGAATATAACCCGTGCTAC
CATCTCCCATTGGTTGCACCCAGTAACCAGCGGCTCCCTAGATTCCATAGGAGTGAGTAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAATATAACCTGCAAGAAGTTTAAAAATTGTTGCCTGTTAAAGATCATATCGTTCCTGCAGTTCCATATA
GCCCAC-AAAAAAGCACATATTCCAACTCGAATATGAGTCGCAGTATTGCGATCCACCCCATCTAACCACGCCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGCACCATAAAAGTTTAGCGAAAGGACAATCG
ATGAAAAGGTGTTGTATTGTTTCATTATTATCACAAAAACAACATCGTGAGCTGCCTACCCAATGTCGTTTTAACAGATT
GTCTTCGGTGAGAATCACTTGTCTAT-----
>chr7A_2054
TTTTT-T-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTGG
AAAAGGAGGCGTGCCCCCGGT-------CTCTGCATCTGAATGATGCATGCAGCCATATTATTAAAAGTCTC-GAAAAAC
AAATAGTATCCAAAGTATTACAGCTCGCAAAA-GGAGCAGGATGACAAAGCCATAAAAGACCTCAAGATTACAACCGATG
ATGATAACAGGACTAGAGACCTAAACTCCTATCCTATTAAGCGACCGCCATCCAAATCGGTTGAATATAACCCGTGCTAC
CATCTCCCATTGGTTGCATCCAGTAACCAGCGGCTCCCTGGATTTCGTAGGAGTGAGTAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAGTTTAAAAATTGTTGCCTGTTAAAGATCATATCGTTCCTGCAGTTCCATATA
GCCCAC-AAAAAAGCACATATTCCAACTCGAATATGACTCGCAGTATTGCGATCCACCCCATCTAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGTGCCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAGAGGTGTTGTATTGTTTCATTATTATCACAAAAACAACATCGTGAGCTGCCTACCCAATGTCGTTTTAACAGATT
GTCTTTGGTGAGGATCACTTGTTTATGCACG
>chr4A_2054
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTTTTTTTGG
AAAAGGAGGCGTGCCCCCGGC-------CTCTGCATCTGAACGATGCATGCAGCCATATTATTAAAAGTCTC-GAAAAAC
AAATAGTATCCAAAGTATTATGGCTCGCAAAA-GGAGCAGGATGGCAAAGCCATAAAAGACCGCAAGATTACAACCGATG
ATGATAACAGGACTAGAGACCTAAACTCCTATCCTGTTAAGCGACCGCCATCCAAATCGGTTGAATATAACCCGTGCTAC
CATCTCCCATTGGTAGCACCCAGTAACCAGCGGCTCCCTGGATTCCGTAGGAGTGAGTAAGGACCATGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAGTTTAAAAATTGTTGCCTGTTAAAGAACATATCGTTCCTGCAGTTCCATATA
GCCCAC-AAAAAAGCACATATTCCAACTCGAATATGACTTGCAGTATTGCGATCCACCCCATCTAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTATGCCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAAAGGTGTTGTATTGTTTCATTATTATCACAAAAACAACATCGTGAGCTGCCTACTCAATGTCGTTTTAACAGATT
ATCTTTGGTGAGAATCACTTGTTTAT-----
>chr2A_2054
TTTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTGG
AAAAGGAGGCGTGCCCCCGGC-------CTCTGCATCTGAACGATGCATGCAGCCATATTATTAAAAGTCTC-GGAAAAC
AAATAGTATCCAAAGTATTACAGCTCACAAAA-GGAGCAGGATGACAAAGCAATAAAAGACCTCAAGATTACAACCGATG
ATGATAACAGGACTAGAGACCTAAACTCCTATCCTATTAAGCGACCGCCATCCAAATCGATTGAATATAACCCATGCTAC
CATCTCCCATTGGTTGCACCCAGTAACCAGCGGCTCCCTGGATTCCATAGGAGTGAGTAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAGTTTAACAATTGTTGCCTGTTAAAGATCATATCGTTCCTGCAGTTCCATATA
GCCCAC-AAAAAAGCACATATTCCAACTTGAATATGAGTCGCAGTATTGCGATCCACCCCATCTAACCATGTCCCGAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGCGCCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAAAGGTGTTGTATTGTTTCATTATTATCACAAAAACAACATCGTGAGCTGCCTACCCAATGTCGTTTTAACATATT
GTTTTTGGTGAGAATCACTTGTTTAT-----
>chr6A_2054
TTTTT-T-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTGG
AAAAGGAGGCGTGCCCCCGGC-------CTTTGCATCTGAACGATGCATGCAGCCATATTATTAAAAGTCTC-AAAAAAC
AAATAGTATCTAAAGTATTACAGCTCGCAAAA-GGAACAGGATGACAAAGCAATAAAAGACCTCAAGATTACAACCGATG
ATGATAACAGGACTAGAGACCTAAACTCCTATCATGTTAAGCGACCGCCATCCAAATCGGTTGAATATAACCCGTGCTAC
CATCTCCCATTGGTTGCACCCAGTAACCAGCGGCTCCCTCGATTCCATAGGAGTGAGTAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAGTTTAAAAATTATTGCCTGTTAAAGATCATATCATTCCTGCAGTTCCATATA
GCCCAC-AAAAAAGCACACATTCCAACTCGAATATGAGTCGCAGTATTGCGATCCACCCCATCTAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGCACCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAAAGGTGTTGTATTGTTTCATTATTATCACAAAAACAATATCATGAGCTGCCTACCCAATGTCATTTTAAGAGATT
GTCTTTGGTGAGAATCACTTGTATAT-----
>chr7A_2055
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTTTTTTTG
AAAAGGAGGCGTGCCCCCGGC--------TCTGCATCTGAATGATGCATGCAGCCATATTATTAAAAGTCTTGAAAAAAC
AAATAGTATCCAAAGTATTACAGCTCGCAAAA-GGAACAGGATGGCAAAGCCATAAAAGACCTCAAGATTACAACCGATG
ATGATAACAAGAATAAAGACCTAAACTCCTATCCTGTTAAGCGACCGCCATCCAAATCGGTTGAATTTAACCCGTGCTAC
CATCTCCCATTGGTTGCACCCAGTAACCAGCGGCTTCCTGGATTCCGTAGGAGTCAATAAGGACCACGTACGGATCCATG
CAGTAGCTCTGAAGATAACCTGCAAGAAGTTTAAAAATTGTTGCCTGTTAAAGATCATATCGTTCCTGCAATTCCATATA
GCCCACAAAAAAAGCACATATTCCAACTCGAATATGACTCGCAGTATTGCGATCCACCCCATATAACCACGTCCCAAACA
ACGATTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGAATAGTGCACCATAAAAGTTTAGCCAAAGGACAATCG
ATGAAGAGGTGTTGTATTGTTTCATTATTATCACTAAAACAACATCATGAGCTGCCTACCCAATGTCGTTTTAACAGATT
GTCTTTGGTGAGGATCACTTGTTTATGCACG
>chr4D_2055
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTTTTTTTG
AAAAGGAGGCGTGCCCCCGGC-------CTCTGCATCTAAACGATTCATGCAGACATATTATTAGAAGTCTC-AAAGATC
AAACAGTTTTCAAAGTATTACAACTCGCAAAA-GGAGGAGGACGACAAAACGATAAAAGACCTCAAGATTACAACCGGTG
ATAGTAATAGGACTAGAGACCTAGACTCCTGTCCTGTTAAGCGACCGCCATCCAAACCGGTTGAATATAACCCGTGCTAC
CATCTCCCATTGGTTGCACCCAGTAATCAGCGGCTCCCTGGATTACATAGGAGTGAGTAAGGACCACGTATGGATCCATG
CGGTAGCTCTGAAGATAACCTGCAAGAAGTTTAAAAATTGTTGCCTGTTAAAGATCATACCATTCCTGCAGTTTCATATA
GCCCAC-AATAATGCACATATTCCAACTCGAATATGAGCCGCAGTAGTACGGTCCA-CCCATCTAACCACGTCCCAAACA
ACGTTTCAATGTTAATTGGAGGGGCAATGTTGAAAGCTATATGGATTGTTCGCCACAATAATTTAGCCAAAGGACAATCA
ATAAAAAGGTGTTGTATTGTTTCATTATTATCACAAAAACAACATCGTGAGCTGCCTACCCAATATCGCTTTAACAGATT
GTCTTTGGTAAGAATCACTTGTTT-------
>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------------S----SSS---S--S--S
-----------------S----------------------------------S---------S-----------------
--------------------------------------------------------------------------------
----------------SS--S--SS--SSS-SSSS---------------------------------------------
---------------------------------------------------------S------------------S---
--------S----------------S------------------------------------------------------
---S-S---------------S--------------------------S-------------------------------
--------------------------------------------------------------------------------
---------S-SSS------------------------------------------------------------------
----------------------S-----------------------------------------S---------------
---------------S-S-------------------------------------------------S------------
----S-------------------------------------------------------SS-----------S------
----------------S---------S-------S---------------------------------------------
-------------S--------------------S--------------------S------S-----------------
------------SSSS----------------S---------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS------------S
--------------------SSSSSSSS--------------------------S-------------------------
--------------------------------------------------------------------------------
----------------------------------------------S----------S-S--------------------
-----S--------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S----
>forward_701
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GAGGTTGGGGTGGAGTTGAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_2055
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ACCATCCGTGCTAGCGTAAG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
