>input_sequence_70759
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------------------------------------------------------------------------ATGGGAGC
GGCAAAGCTCACGGGCGGCCTGTGCGGCGCGCGCGCGCCTGGT-----CCC-CGGCCACGCTCGCT-------CTGCCAT
AAGGATCCCACCCCGCGCACACTGGCATGGCATACTGCAGCGCTCTGCATCCCGATCCAGACACAGACACACAGACACAG
AGCTTTTGGCTGCTCCTGCT---------CGGCTGCTCCCATGGGGCTCTGCCTGTCCGTGGCCCTGTGGAAGGACAAGG
CCTACGCCCGCCGCCGGGCCGTGCGGCGAGGCCAGCAGGAGGCCGTCGACGTCGATGTGATGGTGCGTGGCGGCGGCGGC
AGCAGCTCTGTC---TACGGGCTTCTGGCAGGT---GGAGTGCCGGAGGCGGAGGAACCCGTGGCCGTGGCGGCGCCGAG
GGCTTCGGGCGCGCTGGGCACGCCGGGGCGGCCGATATGGCAGAGGAGGGTGCTGATGGGCGTCAAGTGCCGGCTGCCGA
AGTTCAGCGGCATGATCCTGTACGACGAGCGCGGCCGGCCGGTGGGCGGCGGCGTCCGGGACAGAGCTCGTGACCAGGTA
CGTGCGTGGTCACCACGTTTGCTCAAC---TTACGTGTGTGCGAATGGATGTATCATTGTCCTGTACCTGTCTGCCTGCA
GGAGAAGCACGCCGCTGCCATTGATAACATCCTGAGGGACCTGCACTGGTCCAGCCGGTCGCCGGCGGGCAGCTTAATTC
CAGCGTCGGCCCGGTCCAGTTGA---------------------------------------------------------
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>chr7D_1_TraesCS7D01G448600
TTCTCCAGCAGTACAAAAATCCGTGCATGAACTGTGAACTGGACCACGAGTAAGGCCAATGGATTTCTGATTAGAGAGTG
CTCGCTGATGCTACAGCGTTGCAACCAACCATGGTGTCGACGAGAGCTCTAATGTTTATCGCCGTTTGACCACCGGAACA
TGAAGGCACGCCATGGCCATCCTTTGCTGGTGCCACCGCTGGATATGTCTCAGAAACTTTTCGCCTGTGGGTTTGTTTTC
GAGGAAGTGTTTGAAGATTGGATGTTG------GATAACCATCTTATACTCTTTTTTTTTTTTTGCGGGTGATCTTCCAC
TAAAGTTATTGCGGGTGTAAATAGTTCGAAGATTA-TCAACGCGGAATAACTTTTTGTAACGAGCTTGTGAAATAAAATG
GTTATCTCGATAATAATGCCAGTAAGGGGATTTTTCTTT-----------------------------------------
----------------------------------------------CCATGGCCATGCACTCCTAAAGCGATATCACGTT
GGTTGATATCCTCGAAGCCT-----------------TTAAAGATGACCGCCGTCATGTGGATTCCAGGCTTCCGCTGCC
ACTATACAAGTACTCCCTCCGATCCGAATTACTTGTCAAAAAAATGGATAAAAATGGATGTATCTATAACTAACATACAT
TTAGATACATTCATTTCTGTGACAAGTAATTTCGAACGGAGGGAGTACAAGACAGATATGTATGGTCTCTCTCTGCATGA
CTCTTTCCTGATACGTACAGACAGACGTAGTAGTACTATCTTAGCTAGCCTACACCCAAAGAAAGAAAGAAAAGAAGAAA
TTAAAAGCAAATCACCATCAACCAGATGCGGCCGGGGAGGGAGCTGGCTCAGCGCAAGCAATCGACCCAAGCAGGAACTC
CACCGGCCGAGCACAGCGACTGAACCCTGCGGCCACCTCCGATCCGGGCGTTGTCCCATCGATCTAGGCA-TGCTTCACA
CGGACGCCGCGGTGCGGTGCGGTCACACCACCACACCACACGTAGGGCGGTGAGACGTGAACAGGCGGCATCATGGGAGC
GGCAAAGCTCACGGGCGGCCTGTGCGGCGCGCGCGCGCCTGGT-----CCC-CGGCCACGCTCGCT-------CTGCCAT
AAGGATCCCACCCCGCGCACACTGGCATGGCATACTGCAGCGCTCTGCATCCCGATCCAGACACAGACACACAGACACAG
AGCTTTTGGCTGCTCCTGCT---------CGGCTGCTCCCATGGGGCTCTGCCTGTCCGTGGCCCTGTGGAAGGACAAGG
CCTACGCCCGCCGCCGGGCCGTGCGGCGAGGCCAGCAGGAGGCCGTCGACGTCGATGTGATGGTGCGTGGCGGCGGCGGC
AGCAGCTCTGTC---TACGGGCTTCTGGCAGGT---GGAGTGCCGGAGGCGGAGGAACCCGTGGCCGTGGCGGCGCCGAG
GGCTTCGGGCGCGCTGGGCACGCCGGGGCGGCCGATATGGCAGAGGAGGGTGCTGATGGGCGTCAAGTGCCGGCTGCCGA
AGTTCAGCGGCATGATCCTGTACGACGAGCGCGGCCGGCCGGTGGGCGGCGGCGTCCGGGACAGAGCTCGTGACCAGGTA
CGTGCGTGGTCACCACGTTTGCTCAAC---TTACGTGTGTGCGAATGGATGTATCATTGTCCTGTACCTGTCTGCCTGCA
GGAGAAGCACGCCGCTGCCATTGATAACATCCTGAGGGACCTGCACTGGTCCAGCCGGTCGCCGGCGGGCAGCTTAATTC
CAGCGTCGGCCCGGTCCAGTTGAACACCGCTCTGTCCTTTCCAGTTTGTTAGGCCCA-TATCAAGAAGAAGAAAGCTCAG
AAATTTCCTGTTTGCAAGCCTCATTGTTTTGGGAATAGCCAGCTAGAGCTGTGCCTACGCTAAATTCTGCCCAATTCTGG
GGGTTCTCAATGTGACACCAACCAATGAAATGGAGGAGAGATCAGAGGGCCATGAATGTAGCATTAACTAGTTGAATACT
CTTATATTTGGATAATGGGACAACTTTATTCGTAGAGATG----------------------------------------
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----------------------------------------------CCAATGTTCCTATTT-AAGCTTCTATG---GTCT
TGATCAATCCCCAATCAAATTAACCAACTCAAGGCCACCTTACATTTGAAGCCATTTTGCTGTATGCTATTTTTGGCATA
GTTTTATACTAGCAAGGCATGAATCACTTTCACAACATTAAATCTCTTCAAACAAACATACTGCACAAAGAAGAAAGATT
TTCAGCTCACAAAAATTAGAGCAAGTAACCAACAAAGTGGGTCAAAATTAACTGCCTCCTCGGATTGATCAACATACG--
------TCAGCAAGTTCAAAATAGTTCCCCCCAAAAAATAAAGGGTCCAGAATTGTCATTCAAAG-AAATTTTATGATGC
CGTGGACAT----ATCAGTACTCATGAATCTAATTACTAGCTTCATCAAGTGTTACCAATGACCAAACTAGCATGCCACA
TTCATACCATACCAGAGGCCATCATCTTCTTAGGCAAGAGCA-----------------------CG-------------
----------GAGCCAAGCAAAATCTTTGTGTTGCAGTAAGGATTTTCGAATTTTAATTGCCTTATGAACCTTTACACCA
CAGAACTGGGATTATAGTCAGGCCCTCCGGCCTATAACGGAACATTGCTAGGCGATAAGCAATGTAAGCCAGCATAGAAA
TTTTAATGCATTGCAGAATGGCCTGTTCTCGCACTTTCTTAGTTCCAATATGTGTGCA-------------TCAGGATGA
ACAAGTTCATAACAAGCCA--------TGATTTTTCCTCTACTAAATGATCCATTAAGATATC-AAGATTCAGGA
>chr7B_161
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TGAAGGCAGGCCATGGCCATCCTTTGCTGGTGCCACCGTCGG--ATGTCTCATAAACTTTTCGCCCGCGGATTTGTTTTC
G-GGAAATGTTTGAAGGTTGGGTGTTGTGGCTGGACAACTATCTTCTAGTACT---------------------------
--AAGTTGTGGTTGGTGTAAATAGTTTGAAGATTTGTCAACGCGGAATAAATTTTTGTAACAAGTTTCTGGAATAAAATG
GTTATCTCAATAATACCGAGTTTGAAGGATTTTCCCCTTTTTTGCGCTTTGAAACCCCATGCATTGATTTTTGAGGTCAC
ATGTTTTTCAGGGGAATGCGTTGAAACCCCAGGCATTGTTGCAAGGCCATGGCTATGCACTCCAAAAACAATCTCACGTT
GGTTGGTATCCTGCAAAAAAGCTTTAAGGGGTATAACTTAAAGATGAGCGCCGTCATGTGGATTCCAGGCTGATATATTT
CAGTTGGAAACATAAAATTTGAAAGCA-----------------------------------------------------
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--------AAATCACTATCAACCAGATTTGGCCGGGGAGAGAGC----TCAGCGCAAGCAATTGACCCAAGCAGGAACGC
CACCGGCCCAGCGCAGCGAGTGAACCCTGCGGTCACCTCCGATCCGGGGCTTGTCCCACCCATCCAGGCATTGCTTGACA
CGGACGCCGCGGTGCGGTGCGGTCACACCG-----CCACACGTCGGGCGGTGAGACGTGAACAAGCGGCATCATGGGAGC
GGCAAGGCTCACGGGCGGCCTGTGCGGTGCGCGCGCCTGGTCCCCCGGCCC-CCGCCACGCTCGCTCGCCCGCCTGCCAT
AAGGATCCCACCCCGCGCACACTGTCCCGGCATACTGCCGCGCTCTGCATCCCGATCCAGACACAGACACACAGACACAG
AGCTTTTGGCAGCTCCTGCT---------CGGCTGCTCCCATGGGGCTCTGCCTGTCCGTGGCCCTGTGGAAGGACAAGG
CCTACGCCCGCCGCCGGGCCGTGCAGCACGA------------CGGCGCCGTCGACGTGATGGTGCGTGGCGGCAGCGGC
GGCGGCGTCACTGGATACGGGCTTCTGGCAGGGGGCGGAGTGCCGGAGGCGGAGGAGGCCGTGGCCGTGGCGGCGCCGAG
GGCTTCGGGCGCGCTGGGCACGCCGGCGCGGCCGATATGGCAGAGGAGGGTGCTCATGGGCGTCAAGTGCCGGTTGCCGA
AGTTCAGCGGCATGATCCTGTACGACGAGCGCGGCCGGCCGGTGGGCGGCGGCGTCCGGGACAGAGCCCGTGACCAGGTA
CGTG----GTCACCACGTTTGCTCAAC---TTACGTGTGTGTGAATGGATGTATCATTGTCCTGTACCTGTCTGCCTGCA
GGAGAAGCACGCCGCTGCCATCGATAACATCCTGAGGGACCTGCACTGGTCCAGTCGGTCGCCGGCGGGCAGCTTGATTC
CGGCGTCGGCCCGGTCCAGTTGAACACCGCTCCGTCCTTTCCAGTTTGTTAGGCCCATTATTAAGCAGAAGAAATTTCAG
AAATTTCCTGTTTGCAAGCCTCATTGGTTTGGGAGTAGCCAGCCAGAGCTGTGCCTACGCTAAATTCTGCCAAATTCTGG
---TTCTCAATGTGACATCAACCAATTAAATGGAGGAGAGATCAGAGGGCCATGCATGTAGCATTAACTAGTTGAATGCT
CTTATATTTGGATAATGGGACAACTTTATTCGTAGAGATG----------------------------------------
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----------------------------------------------CCAGTACTCTGATTT-AAGCTTCTATGCTTGTCT
TGATCAGTCCCCAATCAAATTAATAAATTCAAGGCCATCTTACATTTGAAGCCATTTTGATGTATGCTGTTTTTGGCATA
GTTTCATACTAGTAAGGCATGAATCACTTTCACAACATTAAATCTCTTCAAACAAACATACTGCACAAAGAAGAAAGATT
TTCAGCTCACCGAAATTAGAACAAGTAATCAACAAACTGGGTCAAAATTAACTGCCTCCTCGGATTGATTCAACATACTG
TGAACATCAGCAAGTTCAAAATAGTTCCCCCCAAAAAATAAAGGGTCCAGAATTGTCATTCAAAGGAAATTTTATGATGA
CATGGACATATCGATCAGTACTCATGAATCTAATTACTAGCTTCGTCAAGTGTTAGCAATGACCAAACTAGCATGCCTCA
TTCATACTATACCAGAGGCCATCATCTTCTTAGGCAAGAGCATTGAAGCAAAGTTTGCCAACTTACG-------------
----------GAGCCAAGCAAAATCTTTGTGTTGCAATAAGGATTTTCGAATTTTAATTGCCTTATGAACCTTTACACCA
CAGAACTGGGATCATAGTCAGGCCGTCCGGGCTATAACGG----------------AAC-AATGTAAGCCAGCATAGAAA
TTGTAATGCATTGCAGAATGGCCTATTCTCGCACTTTTTTAATTCCAATATGTGCGCA-------------TCAGGATGA
ACAAGTTCATAACAAGCCA--------TGATTTTTCCTCTACTAAATGATCCATTAAGATATC-AGGATTCA---
>chr7A_884
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----------------------------------ACCTCCGATCCGGGCGTTGCCCCACCGGTCCAGGCA-TGCTTCGCA
CGGACGCCGCGGTGCGGTGCGGTCACGCCACCGCACCACACGTCGGGCGGTGAGGCGTGATCAGGCGGCATCATGGGAGC
GGCAACGCTCACGGGCGGCCTGTGCGGCGCGCGCGCGCCTGGT-----CCCCCGGCCACGCTCGCTCGCCCGCCTGCCAT
AAGGATCCCACCCCGCGCACACTGGTCTGGCATACTGCCGCACTCTGCATCCCGATCCAGACACACGCAGACAGACATAG
CTTTTTTGGCAGCTCCTGCTCGGCTGCTGCGGCTGCTCCCATGGGGCTCTGCCTGTCCGTGGCCCTGTGGAAGGACAAGG
CCCACGCCCGCCGCCGGGCCGTGCAGCACGA------------CGGCGCCGTTGACGTGATAGTGCGTGGCGGCGGCGGC
GT---CTCTGAC---TACGGGCTTCTGGCAGGGGGCGGAGTGCCGGAGGCGG---------------TGGCGGCGCCGAG
GGCTTCGGGCGCGCTGGGCACGCCGGCGCGGCCGATATGGCAGAGGAGGGTGCTGATGGGCGTCAAGTGCCGGCTGCCGA
AGTTCAGCGGCATGATCCTGTACGACGAGCGCGGCCGGCCCGTGGGCGGCGGCGTCCGGGACAGAGCCCGTGACCAGGTA
CGTACGTGGTCACCACGTTTGCTGAACGTATTATGTGTGTGTGAATGGGTGTATCATCGTCCTGAATCTGTCTGCCTGCA
GGAGAAGCACGCCGCTGCCATTGATAACATCCTGAGGGACCTGCACTGGTCTAGCCGGTCGCCGGCGGGCAGCTTGATTC
CGGCGTCGGCCCGGTCCAGTTGAATACCCCTCTGTCCTTTCCAGTTTGTTAGGCCCA-TATTAAGCAGAAGAAAATTCAG
AAATTTCCTCTTTGCAAGCCTCATTGTTTTGGGAATAGCCAGCTAGAGCTGTGCCTACGCTAAATTCTGCCCAATTCTGG
GGGTTCTCAATGTGACATCAACCTATGAAATGGAGGAGA---CAGAGGGCCATCCATGTAGCATTAACTAGTTGAAAACT
CTTATATTTGGATAATGGGACAACTTTATTCGTAGAGATG----------------------------------------
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----------------------------------------------CCAGTGTTCTGATTTTAAGCTTCTATGCTTGTCT
TGATCAATCCCCAATCAAATTAACCAACTCAAGGCCATCTTACATTTGAAGCCATTTTGCTGTGTGCTGTCTTTGGCATA
GTTTCACACTAGTAAGGCATGAATCACTTTCACAACACTAAATCTCTTCAAACAAACATACTGCACAAAGAAGAAATATT
TTCAGCTCACCGAAATTAGAACAAGTAACCAACAAACTGGGCCAA----AACTGCCTCCTCGGATTGA-TCAACATACTG
TGAACATCAGCAAGCTCAAAATAGTTCCCCC-------------------------------------------------
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-------------------------TCCGGGCTATAACGGAACATTGCTGGGCGATAAGCAATGTAAGCCAGCATAGAAA
TTTTAATGCATTGCAGAATGGCTTGTTCTCGCACTTTCTTAGTTCCAATATGTGTGCA-------------TCAGGATGA
ACAAGTTCATAACAAGCCA--------TGATTTTTCCTCTACTAAATGATCCATTAAGATATC-AAGATTCAGGA
>chr7A_1876
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-------------------AACCAATGAAATGGGGGAGA---GAGAGGGCCATGTATGTAGCATTAACTAGTTAAATAGT
CTTATATTTGGATAATGGGACAACTTTATTCGCAGAGATGTCAGTTGAGGGAGTCCTGGATTAGGGGGTGTCCGGATGGC
CAGACTATACCTTCAACCGGACTCCTGGACTATGAAGATACAAGATTGAAGACTTCGTCCCATGTCCGAAAAGGACTTTC
CTTGGCATGGAAGGCAAGCTTGGCGATACGGATATGCAGATCTCCTACCATTGTAACCGACTTTGTGTAACCCTAACCCT
CTCCGGTGTCTATATAAACCGGAGGGTTTTAGTCCGTAGGACAACATACAGAACAATAATCATACCATAGGCTAGCTTCT
AGGGTTTAGCCTCTCCGATCTCGTGGTAGATCTACTCTTGTACTACCCACATCATCAATATTAATCAAGCAAGACGTAGG
GTTTTACCTCCATCAAGAGGGCCCGAACCTGGGTAAAACTTCGTGTCCCTTGCCTCCTGTTACCATCCGGCCTAGACGCA
CAGTTCGGGACCCCCTACCCAAGATCCGCCGGTTTTGACACCGACACCAGTATTCTGATTT-GAGCTTCTATGCTTGTCT
TGATCAATCCCCAATCAAATTAACCAACTCAAGGCCATCTTACATTTGAACCTATTTTGCTGTATGCTGTTTTTGGCATA
GTTTCACACTAGTAAGGCATGAATCACTTTCATGACATTAAATATCTTCAAACAAACATACTGCACAAAGAAGAAATATT
TACAGCTCACCGAAATTAGAACAAGTAACCAACAAACTGGGCCAAAATTAACTGCCTCCTCAGATTGG-TCAACATACTG
TGAACATTAGCAAGTTCAAAATAGTTTCCCCCC-AAAATAAAGGGTCCCGAATTGTCATTCAAAGGAAATTTTATGATGA
CATGGACAT----ATCAGTACTCATGAATCTAATTACTAGCTTCATCAAGTGTCAGCAATGACCAAACTAGCATGCCACA
TTCATACTATACCAGAGGCCATCATCTTCTTAGGAAAGAGCA-----------------------CTGAAACAAAGTTTG
CCAACTTGTTGAGCCAAGCAAAATCTTTGTGTTGCAGTAAGGATTT----------------------------------
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>chr6D_2180
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-------------AATTAGAACAAGAAACCAACAAACTGGGCCAAAA----CTGCCTCCACAGATTGA-TCAACATACTG
TGATTATCAGCAAGTCCAAAATAGTTTCTCACA-AAAAATATT-GTCTAGAATTGTCATTCAAAGGAAATTTTATGATGA
CATGGACAT----ACCACTACTCATGAATCTAATTACTAGCTTCATTAATCGTTAGCAATGACCAAACTAGCATGTCACA
CTCATACTATACCAGAGGTCAGCATCTTGTTAGGCGAGCGCA-----------------------CTGAAACAAAGGTTG
CAAACTTACTGCGCCAAGCAAAATCATTGTGTTGCAGTAAGGATTTTAGATATTTAATTGCCTTATGAACCTTTACACCA
CAGAAGTGAGATTTCAGCCTGGC--------------------------AGGCGATAAG-AATGTAAGCCAGCATAGAAA
TTTTAATGCATTGCATAATGGCCTGTTGTCACACTTTCTTAGTTTCAATATCTGTGTTAAATAACATGGCTTCAGGATGA
ACAAGTTCATAACAAGCCAACAGACCATGATTACTTCTCTACCAAATGATACACTAAGATATCTAAGATTCAGGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------S-----------------------------SS--SS--------S------------S-S--S---------
-S----S---------S----S-------------S---S-----S--S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----S-S-SS-------------S-------S---------------S----------S--S--S--S---------
--------S------SS-SSSS-S-S--SS---SS-S-------------------------------------------
-----------------------------------------------------S---------S---S-S--S-------
-----S------SS--SSSS---------------------------S-----------------------SSSSSSSSS
SSSS-SS--SS-SSSSS-SS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-------S-----------SS----------S----SSSS--------------S---------------S-
--------S---S------S------------S-------------------------S-----S---------------
--------------------------------S----------S------------------------------------
-----S--------------------------------------------------------------------------
--------------------------S-----------S-----------------------------------------
----------S---------------------------------------------------------------------
------------------------S--SS-SSSSSSSSSSSSS--S--S------S------------------------
S--S------S---------------------S-----------------------SS----------------------
--------------------------S-----------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------------------------S----
-S-----------------------------------------------------------S---S--------SS----
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-----------------S------------------------------------S-------------------------
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-------------------------------------------------S-----SS-----------------------
-------------------------------------S------------------------------S-----------
----S-------S-------------------------------------------------------------------
----------SS--------S---------------S--------------------------------SS-SSSSSS--
-------------------------------------------------------------------------------S
-S-----------------------------------------------------S------------------------
-------S------------------------------------------------------------------------
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------------------------S-----S-------------------------------------------------
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>forward_62
------------------------------------------ACCACGAGTAAGGCCAATGG------------------
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>reverse_1444
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---AGCTCTGTCTACGGGCTTCT---------------------------------------------------------
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>forward_131
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-------------------------------TGGTGTCGACGAGAGCTCTA-----------------------------
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>reverse_1451
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----------TCTACGGGCTTCTGGCAGG---------------------------------------------------
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>forward_635
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-------------------------------------------------------ATGTGGATTCCAGGCTTCCG-----
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>reverse_3016
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-------------------------------------------------------CCAATGACCAAACTAGCATGCC---
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