>input_sequence_70741
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--ACGACACGGCGCAACTGCACGACAGGCC------------------GAAGAGACCAGACCCAACCACATCGGCTCGGC
GGCCGGCGCAGGGGTTTCCTTCCCTCCTTCCATCCACGATCCACGGCCGCGGCGAGGCGAGGCGAGGCGATGGACGCCGA
CCACGGCGGCGGTGTAGACGAGGCGGAGGCGGCCTTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGC
CCTCCTCCGCGCCCTCCTCGTCCTC---------CGCGCTCTCCCACCAGCGCGCCGGCGGCGGGGCGGCGGCGGCGACG
CTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGTGCGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGC
GGGCCCGCGCTGGAAGACCTTCATCCGGCGCTTCGGCC---------GCGGCCCCCGCCCGCACCACCA---CGCCTTCG
GCGGCGCCCGCAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGACGCC
GGCGGCGACCACGCCGGCGGCTACCGCGACTTCTCCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGA
CCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCCCCCGCCGCCCGCCGACGGCGCCCCGCGGGCCTGACCTCCCCTCCGCC
CCCCGTCCCCCCGGATCACACAACACCACAGGGAAAGTAAA---------------------------------------
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>chr6A_1_TraesCS6A01G308700
TATGCCTGGAGCTGCGGCCACAAGGAATCCAGATCCAGGCTGCTGCTTGGCCTGGACTCGAAAAAAGATAGACCCACGCT
GGTCTACATAATTAAGCGTTCCCTTAAGCGTATTATACAACGAACTGACAGCAGAAAGATAGACAGCTATTTGGCCTGAA
CACGAACAAGCGCCATTATCGTCTCCCGTCAAAACCTGCTCACGTACAGTACATGCACAGTCAGCCGCCAGCAGTGCAAT
GATCATGCTGCCTGTCAGCAAAATCAATTCCTTAATC-ATACAGTGCCAGAGTCCATGCAGCTGCGAGTAAGCAAAACCT
CGTGCCGGCGAATCCGCGGG--CCGTTCGCGGCGCAAATG----------------GCACGCCGCTCGCAACCGCTTCGC
ACGACCGGCAGCAGCAAGATCTCCCGCTCCCCGTCACCCGCAGGACAGAGCG----------------CCCGATGTGTCC
CGGCCAGCTTCGTCCCCCGGT-GTCCGCGCTGTCGCTTCGATCCCTTCCGACTCCACCCGGCGCACTTCATCATTCACTA
AAGCAAAAGGCGCAGATAAATGTGATCTTTTTGGATAAAAAAGCACGGGATGAAA-TGAATCTCATGTGACTAGTAACGC
ACTACTATGCCGATCGCCGTCAGAAACAACCATGAAGCAGCCTGAAGCTGAATGTTTCTCCAACGCCACCACCGGAGAAT
AATAGTAAAAGATCCACAGCCTGTTGATC-----------------GGACCGTGTCATGTTTACCACGACTCCAAGTGGA
CAGTG---CCAACGAGCAACCTCTTCGCTGATCTGCTGCGAGACGAGGGAGAAAAGCAGT--------------------
-----------------AAGCGTGTCAGTTTTTTTTTAAAAGA-ATTAGGAAGCGTGTCAGCTTGGTAACAAAAGA---T
CTACTCTGGCGAACGTTGGG-----------------------CCCCGCGGATTCCGGCCCACGTCAGCCGGCCGCGCCC
ACCGTTGACTCCCCCAC-CCCGCCCACGGCCTGCCCGCGGCGGGCGGCCCCCCGATAAAAGGCCCGCACGCCATCCGCTG
CCACGACACGGCGCAACTGCACGACAGGCC------------------GAAGAGACCAGACCCAACCACATCGGCTCGGC
GGCCGGCGCAGGGGTTTCCTTCCCTCCTTCCATCCACGATCCACGGCCGCGGCGAGGCGAGGCGAGGCGATGGACGCCGA
CCACGGCGGCGGTGTAGACGAGGCGGAGGCGGCCTTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGC
CCTCCTCCGCGCCCTCCTCGTCCTC---------CGCGCTCTCCCACCAGCGCGCCGGCGGCGGGGCGGCGGCGGCGACG
CTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGTGCGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGC
GGGCCCGCGCTGGAAGACCTTCATCCGGCGCTTCGGCC---------GCGGCCCCCGCCCGCACCACCA---CGCCTTCG
GCGGCGCCCGCAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGACGCC
GGCGGCGACCACGCCGGCGGCTACCGCGACTTCTCCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGA
CCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCCCCCGCCGCCCGCCGACGGCGCCCCGCGGGCCTGACCTCCCCTCCGCC
CCCCGTCCCCCCGGATCACACAACACCACAGGGAAAGTAAAGGTATCGGTCGATGGATGATGGTGGTCAAACTTCAAACT
TTCAAAGCGTGGCAAAAAGACGGTGGCCTTTTCTCGGATGGTTCGGCTGC---------------GATGGGGATCGTTTC
TTTCTTCCAGTTCTTTCTCTCCTCTCCTGCTCCCATGATTGATTGATATTTCGTCGCTGTACAAAGAAAAAC---GAAGA
AGAGAATCCATTGTTACATTCGTTGTCATACTTATTAATCCGTCTTATCAAAGTTTTGTCCCCGATTACGGCTGAGAAAT
TCTTCAC---------------------------------------TCGCGTCAGCAATTTCGCCATTGTTTTGCTTTGC
ATAAACAAAAGTTGAGTGTCCGGCCGGAAACTTGCGCGATTGGTAAGAAGAAGAGGAATTCTGAGCCGAATTCTAAGCGC
TTGGCGTGCTCCAGCTGGGACTGATTGCGACCCAAGAAACGAC-GGGTGACCTCCGGCTGGAGGCGTTCGAGAGCCAGGA
TAGAGATGCTTGTCGCGACCGTGCACGTCTTGCACGAGACGGCGGTGTTCTTGGCCTCTTGGGACGCATGTCCCCACTTT
TCTCAA---------GCATGATACATGTGAACGATCATCAATCGCTGTTACTCCTCGCTGTGAATTGGATGGTGG---AG
GGAATTGATGTGAATTCATCGCGGGAGCCGTGATCTCGAGAGAATCACGGAC--CGCGGTATCGAATTCCAGACGGACAG
CCTTGCTTGATGTTAACCTCCAACCATCCATGGCCGGACCAGAATAGAATGCTCCTGGGTTGTCGTGTGGATACAGGTCG
CACTGGGAGCACAAAGTACTCCTACAA--------------ACTTTGAATGGTTTGTGCAATGAAGCCATCATCAGCCCA
TAGTGGATTCCTCCCTGGAGTATGTAGACCATCTTTGACAAATATGAAAACCATACGCCATGCTCATCAATCATGG----
----TCAGGTGTATGAATATATGTAGCATCATCTTAACTTTGTCACGACCCACGGCTGTGACGAGCTCATGCAGTGCTCC
GTCCATTTCAATCAT
>chr6D_33
--------------------------------ATCCAGGCTGCTGCTTAGCCTGGACGCAAAAAAAGTTAGACCACCCCT
GGTCTACATAATTAAGCGTTATTATATAC-------------AACTAACACCAAAAAGATAGACAGCTATTTGGCCTGAA
CGCGAACAAACGCCATTATCATTTCCCCTCAAAACCTGCTCACGTACAGTACATGCACAGTCAGCTGCCAGCAGTGCAAT
AATCATGCTGCCTATCAGCGAAATCAATTCCTTAACTAATACAGTGCCAGAGGCCATGCAGCTGCGAGTAAGCAAAACCT
CGTGCTGGCGAATCCGCGGGGGCCGGTCGCAACGCAAATGGCACGTAGAGGACCCAGCACGCCGTTGGCAACTGCCTCAC
ACGACCGGCAGCAGCAAAGCGCAGGCGGC---------------------CG----------------CCCGATGTGTCC
CGGCCAGCTTCGTCCCCCCGT-GTCCGCGCTGTCGTTCCGATCCCTTCCGACTCCACCTGGCGCACTTCATCATCATTAA
AGCAAAAAGGCGCGGATAAATGTGATCATTTCGGATAACAAAGCACGGGGTGAATCTCATG----TGTGACTAATAACGC
ACTACTATGCCGGTCGTCGTCAGAAACAACCGTGAAGCAGCCTGAAGCTGAATGTTTCTCCAACTCTACGGAT----AAT
AATAATGGAAGATGCACAGCCTGTTGATC-----------------GGACCGTGTCATGTTTATCACGACTCCAAGTGGA
CAGTA---CCAACGAGTAAGCTCTTCGCTGATCTGCGGTGAGACGGGAGAGAAAAGTAGTAAGCGCGTCTTTTTTTCC--
--CATCAGGATATAAGCAAGCGTGTCAGTTTTTTTTTAAGAATTATTAGCAAGCGTGTCAGCT-GGTAACAAAATATCTT
CTATTCTGGCGAACGTTGGGTTGGGATAGAGG-----TCAGGGCCCCGCGGATTCCGGCCCACGTCAGCCGGCCGCGCCC
ACCGTTGACTCCCCTG-CCCCGCCCACGGCCTGCCCGCGGCGGGCGGCCTCCCGATAAAAGGCCCGCACAACATACGCTG
CCCCGACACGGCGCAACTGCACGACAGACC------------------AAAGAGACCAGACCCAACCACATCGGCCCGGC
GGC----GCAGGGGT----TTCCTTCCTTCCTTCCACGATCCACGGTCGCGGCGAGGCG----------ATGGACGCCGA
CCACGGCGGCGCGGCGGACGAGGCGGAGGCGGCCTTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGC
CCTCCTCCGCGCCCTCCTCGTCCTC---------C---------CACCAGCGCGTGGGCGG------GGCGGCGGCGACG
CTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGCGCGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGC
CGGGCCGCGGTGGAAGACCTTCATCCGGCGCTTCGGTCGCGGCCCC---------CGCCCGCACCACCACGCCTT-----
-CGGCGGCCGCAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGAGGCC
GGCG---ACCACGCCGGCGGCTACCGCGACTTCTCCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGA
CCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCCCCCGCCCCCCGCCGACGGCGCCCCGCGGGCCTGACCGCTCCTCCGCC
CCCGT--CCCCCGGATC-----ACACCACAGGGAAAGGAAAGGTATCGTTCGATGGATGATGGTGGTCAAACTTCAAACT
TTCAAAGCGTGGCGAAAAGATGGTGGCCTTTTCTCGGATGGTTCGGCTCGATCGGGATGGGGATGGATGGGGATCGTTTC
TTTCTTCCAGTTCTTTCTCTCCTCCCCTGT---TCCTA-TGATTGATTGTTCGTCGCTGTACAAAGAAAAACAAAGAAGA
AGAGAAGCGATTGCTACATTCGTTCTCATACTTATCA---------ATCCAAGTTTTGTCCCCGATTACGGCTGATAATT
TCTTCGTCTTTGATCTCACGAA----TGGTTAGTGACTTCTTGGTGTCGCATTCGCACTTTCGCCGTTGT-----TTTGC
ATAAACAAAAGTTGAGTGTCCGGCCGGAAACTTGGGCGATTGGTAAGAAGAAGAGGAATTCT------------AAAAGC
TTGGCGTGTTCCAGCTGGGACTGATTGCGACCCAAGAAACGACGGGGAGACCTTCGGCTGGAGGCGTTCGAGAGCCAGGA
TAGAGATGCTTGTCGCGACCGTGCACGTCTTGCACGAGACGGCA---GTGA-----TCTTGTGACGCATGTCCCCACCTT
TGGAGGTGTTACACGG-------------------------------------CTCGTTGTAAATTGGACGGTCG---AG
GGAATTGATGTGAATTCATCGTGAGAACCGTGATCTTGAGAGAATCAGGGACCGCGCGGTACCGAATTCCAGACAGACAG
CCCTGCTTGATGTTAACCTCCAACCATCCATGGCCGGACCAGAATAGAATGCTTCTGGGTTGTTGTGTGGATACAGGTCG
CATTGGGAGCACAAAGTACTCCTACAA--------------ACTTTGAATGGTTTGTGCAATG-----------------
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>chr6B_309
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---------------------------------------------------------------------AAGCAAAACCT
CGTGCCGGCGAATCCGCGGG--ACGTTCGCAGCGCAAATGGCACGTAGAGGACCTAGCACGCCGCTCGCAACTGCTTCAC
ACGACCGGCGGCAGCAAGATCTCCCGGTCCTCGTCACCCGCAGGACAAAGCGCAGGCGGCCGCCCGACCCCGACGTGTCC
CAGCCAGCTTCGTCCCCCCTGCGTCCGCGCTGTCGTTCCGATCCC----------ACCTGGCGCACTTCACCGTTAATTA
AAGCGAAAGGCGCAGAT-AATGTGATCATTTTGGATAACAAAGCATGGGATGAATCTGAATCTCATGTGACTAATAACGC
ACTA---TGCAGATCGTCGTCAGAAACAACCGTGAAGCAGCCCGAAGCCGAATGCTTCTCCAATTCTATCTGCGG---AT
AATAATAGAAGATGCACAGCCTGTTGATCGGACCTAGTACTAGGAAGGACCGTGCCATGTTTATCACGACTCCAAGTGGA
CAGTAGTACCAACGAGTAACCTCTTTGCTGATCCGCGGCGAGACGAGGGAGAAAAGTAGTAAGCGTGTCTTTTCTTTCCC
ATCATCAGGATATAAGCAAGCGTGTCAGTGTTTTTTTAAGAGA-TTTTTTTTTT--------------------------
------TGGCGAACGTTGGGTTGGGATAGAGGGATGGTCAGGGCCCCGCGAATTCCGGCCCACGTCAGCCGGCCGCGCCC
ACCGTTGACTCCCCCACCCCCGCCCACGGTCTGCCCGCGGGT---GGCCTCCCGATAAAAGGCCCGCACGCCATACGCTG
CCACGACACGGCGCAACTGCACAACAGACCGAAGAAACGCACAGCCGCAAAGAGACCAGACCCAACCGCATCGGCCCGGC
GGC----GCAGGGGT--------TTCCTTCCTTCCACGATCCACGGTCGCGGCGAGGCG----------ATGGACGCCGA
CCACGGCGGCGGGGTGGACGAGGCGGAGGCGGCCTTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGC
CCTCCTCCACATCCTCCTCGTCCTCCGCCCTCTCC---------CACCAGCGCGTCGGCGG------GGCGGCGGCGACG
CTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGCGCGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGC
GGGGCCGCGCTGGAAGACCTTCATCCGCCGCTTCGGGCGCGGCCCCGGCGGGCCCCGCCCGCACCACAA---CTT-----
-CGGCGGCCGCAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGAGGCC
GGCG---ACCACGCCGGCGGCTACCGCGACTTCTCCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGA
CCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCACCCGCCGCCCGCCGACGGGGCCCCACGGGCCTGACCGCTCCTCCGCC
CCCT-------CGGATC-----GCGCCACAGGAAAAGGAAAGGTATCGCTCGACGG----TGGTGGTCAAACTTCAAA--
------GCGTGGCAAAAAGACGGTGGCCTTTTCTCGGATGGTTCGGCTCCATAGGACGGGATGCGGATGGGGATCGTTTC
TTTCTTCCAGTTCTTTCTCTCCTCCCCTGCTGCTCCCA-TGATTGATTGTTCGTCGCTGTATAAAGAAAAACAAAGAAGA
AGAGAAGCGATTGCTACATTCGTTGTCGTACTTAAT-------------CAAGTTTTGTCCCCAATTACGGCTGATAATT
TCTTCGTGTTTGATTTTGCGAATGGTTGGTCAGTGACTTCTTGGCGTCGCATTAGCAATTTCGCCGTTGT-----TTTGC
ATAAACAAAAGTTGAGTGTCCGGCCGGAAACTTGGGCGATTGGTAAGAAGAAGAGGAATTCTGAGCGGAATTCTAAAAGC
TTGGCGTGTTCCAGCTGGGACTGATTGCGACCCAAGAAACGAC-GGGAGACCTCTGGCTGGAGGCGTTC---AGCCGAGA
TAGAGATGCTTGTCGCGACCGAGCACGTCTTACCAGAGAAGACGGCCGTGA-----TCTTGTGACGCATGTCCCCACTTT
TGGAGGTGTTCCACGGCCTGATGCATGTGAACGATCATCAATCACTGTTACTCCTCGCTGTGAATTGGATGGTCAAGTAG
AGAATTGATGTGAATTCATCGCGCCAACCGTGATCTGAAGAGAATCATGGACCGCAGC--ATCGAATTCCAGACACACAG
GTTTGCTTGATGTTAACCTCCAACCATCCATCGCCGGACCAGAATAGAATGCTTCTGGGTTGTCGTGTGGATACAGGTCG
CATT-GGAGCAGAAAATACGTACAAACTACTCTTATCATCCACTTTGAATGGT--------------------------A
TAGTGGTTTCCTTCCTGGAGTACGCAGACCAGCTTTGAC-AATATGAAAACCATACGACATACTCATCAATCATGATCAG
GTATTCAGGTGTATGAATATGTGTGACATC---TTAACTTTGTCATGACCCACGTCTGTGACGAGCTCATGCAATGCT--
GTCCATTTCAATCAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S--------S-S-------S------SS-S--
--------------------SSSS--SS-SSSSSSSSSSSSS----S---S--S--------------------------
-S-------S----------S-S----S-------------------------------------S--------------
S------------S-----S---------------SS---------------S---------------------------
------------------------------S-----------------------------------------S-----S-
--------------------------S---S----------------S--------------------------------
------------------S----------------S-S--------------------S----------------S-S--
---------------------------S----------S---------------S------------------S------
----------------S--------------S--------------------------------S-S---SS---SS---
----S--S-----S-------------------------------------------------S----------------
----S-----------S-------------------S-------------------S-----------------------
---------------------------------------S---------S-------------S----------S-----
---S----------------------------------------------------------------------------
-------------------------------------------------S------------------------S-----
---------------------------S--------------------S--------------------------S----
---SSSS--------SSSS----S-------S--------------S------------SSSSSSSSSS-----------
------------S--S----------------------------------------------------------------
-----------------------------------SSSSSSSSS----------S------SSSSSS-------------
--------------------------------S-----------------------------------------------
---S--------------------------------S--------------S---------------------SSSSSSS
S-----S---------------------------------------------------------------------S---
----SSS-------------------------------------------------------------------------
---------------------------------------------------------------------S-S--------
---SSSS----------SSSSS---------------S----------S-------------------------------
------------------------------------------------S-------------------------------
------------------------S------S-SSSS-S--------SS-------------------------------
------S-S----S-----------------------SSSSSSSSS---S-------------------------S--S-
-----SS-------------------------------------------S-S------------S----SSSSS-----
----------------------------------S-------------------------------S---------SS--
--------S--------------------------------------S--------------------------------
---------------------------------------------SSS-SSSSSSS-----S------------------
-SSSSS-----------S----S--------------------S-----------------------------S------
-----------------------S--S---------S----------S--------------------------S-----
-----------------------------------------------------S--------------------------
--S------------------------------------------------------------SSSSSSSSSSSSSSSS-
------S-----S---------S-S------S-------S-----------------S---S-------------S----
--------------------S---SS----SSS------------S--------S------------------S----SS
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>forward_711
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---------------------------------------------------ATGTTTCTCCAACGCCACCA---------
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>reverse_2446
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---------------------------------------------TGTTCTTGGCCTCTTGGGAC---------------
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