>input_sequence_70720
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--------------------------------------------------------------------------ATGGCC
GGAGGCGGAGGAGACGAGGAGGTGACGCTGCTGGGCCACTGGGGGAGCGCGTACGTGACACGAGTCCGGCTAGCGCTGCA
CCTCAAGGGCGTGCGGTACGAGTACGTGGAGGAGGACCTGCGCAACAAGAGCGACCTCCTCCTCCGCTGCAACCCCGTCC
ACCGCGCCGTGCCGGTGCTCATCCACAACGGCCGCCCCGTCTGCGAGTCCCAGATCATCCTCCAGTACATCGACCAGGCC
TTCGGACCTCCC------ACTCTCCTCCCCGCCGACCCGCACGAGCGCGCGGTCGCCCGGTTCTGGGCAGCCTACGCCGA
CGACGTGCTGGGGGCGCCGTGGGAGAAGGCGTACAGGGCCCGCACCGAGGAGGAGCGGGCCGGGTGGATGAGGCGGGTGG
TGGCGGCCACGGACGCGCTGGAGCGGGGGCTGAGCGAGTGCACCGACGGGGGCAAGAAGGGCTGCTTCTTCGGCGGCGAG
CGGGTCGGGTTCGTCGACGTCGTGCTGGGCGGCGTTGTCCCGCTGGTGCACGCCACCGTGGAGATCTCCGGGGACATGCT
CTTCGGCGACGCCGGGAGGACGCCGCTGCTTGCCACCTGGCTGCAGCGCTTCGGCGAGCTCGACGCCGCCAAGGCGCTCC
TGCCGGACGTCGACCGGGTCGTGGACTACGTCAGGATGATACACGCCAAGAACGCCGCTGTCAAGGCTTCTGCGAATTAA
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>chr3B_1_TraesCS3B01G025000
GAAATTAGACCCTGTTGCCGAAAGAAAAACTTCACCATCAAACACTTTTTCTTTCTGAAACAAGATCTTTGTTGCAGAAA
GCTTCTGAAACAAGATCAAAATCAATCTGACGGCTACACAGGCGGCGGATGTTGTGCGGGCATCAGTCAGCTGAAGGTTA
GCGTTTTCCTGTATAATCTACCCAAAAAAACATATATAATCAGCATATATGATTTTTGCGGGGCCAACATATATGATATA
TACGGGAAATAAAGAAAGGGAAACTCTTACAATCACCTGGCGGATCGCAGCGTCCGCGTCCGCCACCTCCCCTGCCTCAC
ACGTGTCTCAGTGAGAGCCCACTATCCTTTGTCGAACGCGCTTCTGCAACAGGAGCTATGTTTCTGAAACATATGTAGTA
TTGCAATGGTCTACAGCAGGTCTACCTTTTGCAACAAAATATCCCTTACGAAATTTTTAAGACCTTGGTTGCAAAAAAAA
TTACAACAAAAACTCAGTTGCAAAATACTGCAACAAAACAACTGTTGCAGATAAATTCTGCAATAAGACCAATGTTGCAT
AAATAATCCTGCAACAAGACCTGTGTTGCAGAAGTAATCCTGCAACAAAATTTGTGTTGCAATGATGAAGGCACGTCTAA
GCGCTTGATGCGGCACAGATTTGATGGCTCGCGACCTGGCTGATCTTTTAAAAAGATTGGCTGGTGGATACGTAGCACGC
CCCATAAAGAAACCATGTATAGTCAAACTTTGAAGTGGTCGTGTA-CTGCGTGTTGATATATAATGCCTTG--------C
AGCTCGATCAGATGGCGTGGAGATAACATTCTTTGACTATTTTTCTCAAGAAAACAGAGCCATGTCCCATGGACGAAGAA
GATTCATCCCTAAGCAAACTCTGACT-----------------------GATATATACTCCACCGCGCCGTGTACCTCAA
GGGCACCCTAAGCGCCGAAGGGCGAACAGTACTAGCAGCTGAGTGTGCGCG--ACGCAGAGTCATCGGAGGTCGATGGCC
GGAGGCGGAGGAGACGAGGAGGTGACGCTGCTGGGCCACTGGGGGAGCGCGTACGTGACACGAGTCCGGCTAGCGCTGCA
CCTCAAGGGCGTGCGGTACGAGTACGTGGAGGAGGACCTGCGCAACAAGAGCGACCTCCTCCTCCGCTGCAACCCCGTCC
ACCGCGCCGTGCCGGTGCTCATCCACAACGGCCGCCCCGTCTGCGAGTCCCAGATCATCCTCCAGTACATCGACCAGGCC
TTCGGACCTCCC------ACTCTCCTCCCCGCCGACCCGCACGAGCGCGCGGTCGCCCGGTTCTGGGCAGCCTACGCCGA
CGACGTGCTGGGGGCGCCGTGGGAGAAGGCGTACAGGGCCCGCACCGAGGAGGAGCGGGCCGGGTGGATGAGGCGGGTGG
TGGCGGCCACGGACGCGCTGGAGCGGGGGCTGAGCGAGTGCACCGACGGGGGCAAGAAGGGCTGCTTCTTCGGCGGCGAG
CGGGTCGGGTTCGTCGACGTCGTGCTGGGCGGCGTTGTCCCGCTGGTGCACGCCACCGTGGAGATCTCCGGGGACATGCT
CTTCGGCGACGCCGGGAGGACGCCGCTGCTTGCCACCTGGCTGCAGCGCTTCGGCGAGCTCGACGCCGCCAAGGCGCTCC
TGCCGGACGTCGACCGGGTCGTGGACTACGTCAGGATGATACACGCCAAGAACGCCGCTGTCAAGGCTTCTGCGAATTAA
ACCGGCATGCATGGTTACATGGACACATAATTGATGTACACTCCCTCCTTCCTCCGTCCCAAAATAAGTTACTCAATTTA
TAAAGTTAGTACTATAAAGTTGAGTCACTTACTTTAGAATGGAGGAAGTATTATCTTATTTTCCACGTTTGCTTTATGGC
AACCACTCAATTCTCCTAGGCGTAGACGTTGGCAACAGCGTGGGCTGCGTCGACGTCGACGCAGTAGGCTATGAAAAAAG
TTTGAGCTCAACGAAACTATTT-----CAGCTCGCTTTAGGCTCAGCTCAATCCCTAAAGGAGTCGAGCTCGACATACGT
GAATAGTTTGATCAAGCTCGTTTGGAGGTGATTTTGTTGAGCCGAGCTCAAGCTTTGTCGAAGTCAATCTAGTATTTTTC
ATTTAAGTGAGCATTACTTTCTTATAGTGCAGACTCACTTGATCGAGCTGAGCTTGAGTCCACCCAAGCTTTGTAAGGAT
TATTAGGTTTTTATATGTCTGAACAATGATATATTAGTTATCAAGCTTTGTCGAGCTGAGCTCGAGCCTATCAGCAAGCT
TGAAGTCTAACTCAGTCTCGCTTGAGCTACTCATTTTGCAGCTGTACCAGGCAGGAGGTTGACGGGGTAAATCGGACACT
TTAAGATTATCAGGGTGCAAGGTTCAACGGCGCGGGCAGGGGTAGAATGTGTAGAGGTATGATAGAGGTGTGGCGGAAGC
TAAGATAGGGGTCGTCATATGACATTGTAGACTATTATCTTTCTTTTTTTATTAAATGAACGTGCAGTCCTACTGCACG-
TTCAAAAGAAAAACAAGTATGGCTGTCCGCAACAGATGAAGATGGGTTACAAGCCTGTTAACATGTTGATGACAGTGAAC
------AACAACAACAACAACAATATTCTTAGTATACGGAATAGACGCACGTACTCCACACACACCGCTGAGACCAACTA
GATTGATATCCCACAAGCCCGAGTAGTTAAAACTTGATTTGTCTCTGCGCTC
>chr3D_724
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---ATAAAGAAACCATGTATAGTCAAACGTTGAACTCGTCGTGTACCTGCGTGCTGATATATAATGCCGTGTAGGTCGAC
AGCTCGATCAGATGGCGTGGAGATAACATTCTTTAACTATTTTTCTCCAGAAAACGGAGCCATTTCCCATGGAGGAAGAA
GATTCATCCCTAAGCAAACTCTGACTCCCGTCACACATACATACCAGCTGATATATACCCCACCGCGCCGTGCACCTCAA
GGGCCC------------------AACATTACTAGCAGCTGAGAGTGTGCGCGACGCAGAGTCATCGGAGATCGATGGCC
GGAGGCGGAGGAGACGAGGAGGTGACGCTGCTGGGCCACTGGGGGAGCGCGTACGTGACCCGGGTCCGGCTGGCACTGCA
ACTCAAGGGCGTGAGCTACTCTTACGTGGAGGAGGACCTGCGCAGCAAGAGCGACCTCCTCCTGCGCTGCAACCCCGTCC
ACCGCGCCGTGCCCATCCTCATCCACAACGGCCGCCCCGTCTGCGAGTCCCAGATAATCCTCCAGTACATCGACGAGGCC
TTCGGACCTCCCG------CCCTCCTCCCCGCCGACCCGCACGAGCGCGCCATCGCCCGGTTCTGGGCGGCCTACGCCGA
CGACGTGCTGGGGGCGCCGTGGGAGAAGGCGTACAGGGCCGGCACCGAGGAGGAGAGGGTCGGGTGGATGAGGCAGGTGA
TGGCGGCCACGGACGCGCTGGAGCAGGGGCTTAGCGAGTGCACCGACGGGGGCAGGAAGGGCTGCTTCTTCGGCGGCGAA
CGGGTCGGGTTCGTCGACGTCGTGCTCGGCGGCGTGGTGCCGCTGGTGCACGCCACCGTGGAGATCTCCGGGGACAGGCT
CTTCGGCGACGCCGGCAGGACGCCCCTGCTGGCCGCCTGGCTGCAGCGCTTCGGCGAGCTCGACGCCGCCAAGGCGCTCC
TGCCGGACGTCGACAGGGTCGTGGACTACGTCAGGATGATACACGCCAAGAACGCCGCTGTCAAGGCTCCTGCGAATTAA
ACCGGCATGGTTACGTGGATTC----------------------------CCTCCGTCCC--------------------
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-------------------------------------------------------------------------AAAAAAG
TTCGAGCTCAACAAAACTATTTAACTTCAGCTCACTTTAGGATCAGCTCAAGCCCTAAAGGAGTCGAGCTCGACCTACAT
GAATAGTTTGATCAAGCTCG-TTGGAGGTGATTTTGTCCAGCCGAGCTTAAGCTTTGTCGAAGTTAATCTAGTACTAGAA
GGGTTGGGCGCGATTTGCTGGTGTTGTTGGGTTTCTTCATAAAATATTA-------------------------------
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----------------------------------------------------------------------TGGCGGAAGC
TAAGATAGGGGTCGTCATATGACATTGTAGACTATTA----TCTTTTTTTAATAAATTCACGTGTAGTCCTACTGCACGG
TTCAAAAGAAAAACAAGTATGGTTATCTGCAACAGGTGAAGATGGGTTGCAAGCCTGTTAACATGTTGACGAGAGTGAAC
AACAACAACAACAACAACAACAATATTCTTATTATACGGAATAGACGC----ACTCCACACACACCGCTAAGACCAACTA
GATTGATATCCCACGAGGCCGGGTAGTTAAAACTTGAT--------------
>chr3D_1025
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------------------GAGGTGACGCTGCTGGGCCACTGGGGGAGCCCGTTCGTGACGCGGGTGCGGCTGGCGCTGCG
CCTCAAGCGCGTGCGGTACGAGTACGTGGAGGAGGACCTGCGCAGCAAGAGCGACCTCCTCCTGCGCTGCAACCCCGTGC
ACCGCGCCGTGCCCGTCCTCATCCACGACGGCCGCCCCGTCTGCGAGTCGCAGGTCATCCTCCAGTACATCGACGAGGCC
TTCGGGCCTCCCG------CCCTGCTCCCCGCCGACCCGCACGAGCGTGCCGTGGCAAGGTTTTGGGCCGCATACTTCGA
CGGCGAGCTGGGCGCGCCGTGGGACCGGGCGCTCAGGGCCGGGACCGAGGAGGAGCGGGCCGCGTGGATGCAGACGGTCG
TGGCCGCGGCGGACGGGCTGGAGCGCGGGCTGGGCGAATGCACCGACGGCGGGCGGAAAGGATGCTTCTTCGGCGGCGAG
CGGGTCGGGTACGTCGACGTCGTGGTGGGCGGCGTGGTCTCGTACGTGCACGCTGCCGCGATGGTCTCCGGCGAGAGGGT
GTTCCAGGATGAAGGCAGGACGCCGCTGCTGGCGGCGTGGCTGCGGCGCTTCGGCGAGCTCGACGCCGCCAGGGAGCTGC
TCCAGGACGTCGACCGGGTCGTGGAGTACGTCAGGTTCATACACGCCAAGAACGCTGCCAAGGC---TCCTGCGAATTAA
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>chr3A_1025
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------------------GAGGTGACGCTGCTGGGCCACTGGGGGAGCCCGTTCGTGACGCGGGTGCGGCTGGTGCTGCG
CCTCAAGGGCGTGAGCTACTCTTACGTGGAGGAGGACCTGCGCAGCAAGAGCGACCTCCTCCTCCGCTGCAACCCCGTCC
ACCGCTCCGTGCCGGTCCTCATCCACGACGGCCGCCCCGTCTGCGAGTCGCGGGTCATCCTGCAGTACGTCGACGAGGCC
TTCGGCTCCCCCGGCGACACCCTCCTCCCCGCCGACCCGCACGAGCGCGCCGTGGCGAGGTTCTGGGCGGCATACTTCGA
CGAGGAGATGGGCGCGCCGTGGGACCGGGCGCTCAGGGCCGGGAGCGAGGAGGAGCGGGCCGCGTGGATGCAGAAGGTGG
TGGAGGCGGCGGACGGGCTGGAGCGCGGGCTGAGCGAGTGCACAGGCGGCGGCAGGAAGGGCTGCTTCTTCGGTGGCGAG
CGTGTCGGGTACGTCGACGTCGTGGTGGGCGGCGTGGTCTCGTACGTGCACGCCACCGCGAGGGTCTCCGGCGAGAGGGT
GTTCCAGGATGAAGCCAGGACGCCGCTGCTGGCGGCGTGGCTGCGGCGCTTCGGCGAGCTCGGCGTCGCCAGGGAGCTGC
TCCAGGACGTGGACCGGGTCGTGGACTACGTCAGGTTCATACACGCCAAGAACGCTGGCAAGGCACCTCCTGCGAATTAA
CCACGGCTCCATG-------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------------------------S-----S-S----------------S--------------S-----------
----------------------------------S------------S-------S-------S---------S------
----------------------------------------------------------S-------------S-------
----S-SSSSSSSSSSSSSSSSSS----S--------------S---S----------------------S---------
-----------------------------------------------------------S--S--------S--------
--------------------------------------------S-----------------------------------
----------------S---------------------------------------------------------S-----
--------------------S-----------------------------S-----------------S-----------
----------------------------------------S---------------------------------S-----
------------------------------------------------------S-------------------------
-----------------------------------S----------------------------------------S---
---------------S--------------S---S---------------------------------------------
--------------------------------------------------------------------S-----------
-------------SS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--S---------S--------------------S-------S---------S----------------------S---S-
--------------------S----------------SS---------S---------------S---------S-SSSS
SSS-SS-SSSSS---SSS-SS-SS-SS--SSSSSSSS-S-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------SSSS----------S-----SS-----S---------------
----------------------S-S--S-------S------------S--------------------S--S-------
-------------------------------S----------------SSSS-----------------S----------
--------------S--S---S----------------SSSSSSSSSSSSSS
>forward_650
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----------------------------------------------------------------------GCACGTCTAA
GCGCTTGATG----------------------------------------------------------------------
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>reverse_1797
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------------------------------------TACACTCCCTCCTTCCTCCG------------------------
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