>input_sequence_70712
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------------------------------------------------------------------------------AT
GCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCGT---------CGGCTGCGGCGGCGG
CGATGGCGCCTCTGGCGGCTGCGGTCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCC
ATGCCCATGGCGATGGCGATGCCGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGG
CAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCCTACGCCACCCCCGTCGCCGCCG
CGCGCGCCTACGACACGGCCGTCTTCTACCTGCGCGGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTG
GCGCTGTCGTCGCCCGAGGCCGCCGCCGAGGCCG------GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCT
GTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGG
TCGCCGCGCCCGCGCACCACCGGGAGCGGCAGCGGCTCCACCAACACCACCACCAC---GCGGAGCCGCACGCTGAGGAG
CTGCACCGCCACGTGAAGCAGCAG--------------------------------------------------------
--------------------------CGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------
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---------------------------GGCGCCGAGCCCGGACACCTCCGACGCCGA------GTGA-------------
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>chr2D_1_TraesCS2D01G515900
GGACCACCTTTTTCCTTTCTGCGGGGGTAAGGATAATCTTTGTCATTGCCTAGTCAGGTCTGTTTTGTAATAAGACATGC
----ATATTTCTTCTAGAATTTGCCCTTATTGTATACTC-AAGCGGTTACTTGTTGACCCCAAAAAATGTGAACGGAACT
TGGACAGGAAGAAACCAGAGCGGCAACGGAGGTCAACAAAATTACAGCGTGGCGACAAGTGCGCACGGCACGAGGGTTGG
TGAGCAACAGAGAAGGATGGAT----TGTGATGCTGCGATCATCCTATCATATAACTTACCACGAGAAAGAACCGTTCAT
GTTTTTCTTGGATTGGACCAGCGAC--AACAACGATGG----------TGTTTCCACAGC--------------------
----------------------CAGAGCAAGC----AATTGTCCACCAAAT-----ACAAATTCCAATCCTGAGGTAACT
AATCGGCCATGTCAGCTTCAGA-----------ATTAAGTAGCCATGAGTTGACGCTAGCTGTGCCGAATGTAG-----T
ACAGGTACAAATACAGCCGA--ACCGATTGATGTTGCCTGCGAGAATTGTACGTAT--ACGGATGGACTACTGGTCCAAT
ACGTGTATGTATGTAGGGATATGCATGGACCTCTGGGGTGTCGTCCGGACGCAGGTTAGGCGGTGGACCTAGCGATTAGG
GGTGGCGCTGGGTCGGATCGGGTCGGGCCAGGCTCCCTTCCAAACAGCACAGTAGAGTACACTGCTGCT------GCCGC
CGCCGTCGATGTCCTCTTCTCTCTTCCCCCCTCCCGCCCG-----GTTTATGATTATCCCAACCAAACTCTAACCATACC
CCCACCCACAAAATCCCAATACAAATACCACCGCCCAGCAAATAGATAGATAGCCCGG-----ACCGGAGGGAGGGAAGA
GAGAGAGTCCAGCTCCGCT--GCCGCACACCAAAAGCTACTCCTCCTTTGGGCACGCGG----CCGGCAGGGAGGGGAGA
GGGGAGCCGAGGCGGCGGCCGGCGGCTAGCCAGCATAGGAGCATAGGTAGTTGGTAGGCAGCTCA----GCTTCGCTCAT
GCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCGT---------CGGCTGCGGCGGCGG
CGATGGCGCCTCTGGCGGCTGCGGTCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCC
ATGCCCATGGCGATGGCGATGCCGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGG
CAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCCTACGCCACCCCCGTCGCCGCCG
CGCGCGCCTACGACACGGCCGTCTTCTACCTGCGCGGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTG
GCGCTGTCGTCGCCCGAGGCCGCCGCCGAGGCCG------GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCT
GTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGG
TCGCCGCGCCCGCGCACCACCGGGAGCGGCAGCGGCTCCACCAACACCACCACCAC---GCGGAGCCGCACGCTGAGGAG
CTGCACCGCCACGTGAAGCAGCAG--------------------------------------------------------
--------------------------CGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------
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---------------------------GGCGCCGAGCCCGGACACCTCCGACGCCGA------GTGAAGCAGCCAAGCAG
CGAGAAGAAGCAGCGGCTGCT--TCCAGTCATCCACAACCCGTCGACCATGC----AGCTAGTCTCCGGAGAGCGGCCAG
CCGGCGTATGATCAATCAGATTCAGCACAACCAACTCAATCGTGTCCA--------------------CCTGTCCCCCTA
GCGAGCTCCGCCGCGTCGGT------GAGG----GCGGCGAGGTGCCGGTGGTCGGTGGGTCGGTGGCCGGATTTTTCAA
TACGTCGTTCTGGATAAGAACAAGGGAGGG--AGGGGAAGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCAAAA
AAGACAGCTGTAACAGTTGATAAAACAATCGCCACCATCTTCTTTTTCTTCTCTCTCTCT----------------CTGT
TATCGAGTAGATAAGCAGCGATTAGCAGTACAATGTTCTGTTAATTAATCGTCCCAGTTGGCCGACTCGATCGCCCCCTC
CGTTG----TTGTTAATTGCTGAGTGCATCGCCTCTGGATTTTGATCCCGTATACAAT----TTGATCCAGTGGTTCGTA
CGTATCCA----GTCGCTCGGCTCGGCTTAATCCGGGTGTCTGCTGGTGGGAGCAGCAACAAAGCAAGCATATCCGCGTT
AGGTTAGGCATCGGCAGCCGGCCA--------GCCAGCATGCACTAATCAGTT-GGGGTGAGACTTTTCTCCGTCCATGT
CTCTGCCTCTGCATGCTTGTGTCTGAATCCGAACGTGCCGGCGCAATTATGGATCAG-----------GGAGCGGCGGGC
CGATTGGTACTGCTACTCGTGGCTAATCTAATCGCCAACGCCAAGGAACGGAGTGGATCTAGCTACATGAGCACAGAGGT
GGCAGCAACTGGGCAGATGGGTCGTAGGTAGATTACTGGTATGATG-----------------GTGTGTGGGTGATTGGT
TTTGGTTGGGTTGGGT-----GGGTATTAGGCCAAGGCCCAGGCCACCACATCGGACGGAAAGCAAAGCAACGCCCACAG
CTCCGGCCCGATGATGATTGCGTTCTCCCTCTCCGCAGTGCATGCGTGGATCGCC
>chr2A_1
GGACAACCTTTTCCCCTTTCGCGGGGGTAAGGACGATCTTT-TCGTTGCCTAGTCAGCTCTGTTTTGTAA---GGCATGC
AAGTATATTTCTTCTAGAATTTGCCCTTATTGTATACAC-AAGCGGTTACTTGTTGACCCGAAA--ATGTGAACGGAACT
TGGACAAGAAGAAACCGGAGCGGCAACGGAGGTCAGCAAAATTACAGCGTGGCGACAAGTGCGCACA-CACGAGGGTTGG
TGAGCAACAGAGAAGGATGGATCGGATGTGACGTTGCGTTCATCTCATCATAAAACTTACCACAAGAAAGAACCTCTCGT
GTTTTTTTC---TTGGACCGGCGACAGAACAACGATGTTGCTCCTTGCTACTCCCTCGTTTTTTTGACACTAGTATCAAA
AAAACGTCTTACATTATGCGGCGAGAGTAAATGACGAGTTGTGCAGCGGAT-----GCAAATTCCAGTTCCGAGGCGACC
AAGTAGCCACGCTAGCC------------------------GCCATGAGATGACGCTAGCTGTACCGGAAGTACAAAATT
ACAAATACAAATACGTAGTACGACGGATGGATGTTGGTTCGGAGAATTGTACGTATGTACCGGACGCAAGTG--------
----------------------------------------------------AGGTGAGACGGTGGGCCTGGCGATTTGG
GGTGCCGCTGGCCTGGGTCGGATCGGGTCAGGCTCCCTTCCAAACAGCACAGTAGAGTACACTGCTGCTCCT---GCCGC
GGCCGTCGATGTCCTCTTCTCTCTTCCCCCTCCGGACCGGGGCTAGTTTATGATTATCCCAACCAAACTCTAATCATACC
CCCACCCACAAAATCCCAATACAAATACCACCGCCCAGCAAATAGATAGATAGCCCGGGCTGGACTGGAGGGAGGCAACA
AAGAGAGACCAGCTCCGCCCCGCTGCACACCAAAAGCTACCCCTCCTTCGGGCACGCGGGCGGCCGGCCGGGGAGAGAGA
GGGCAGCCGAG----------GCGGCTAGCCAGCGTAGGAGCTTAGGTAGGTTGTAGGCAGGCAGCCTCGCTTCGCTCAT
GCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCTGCTGCGGCTGCGGC---GGCCGCGG
CCATGGCGCCCCTGGCGGCTGCGGCCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCC
ATGCCCATGGCGATGGCGATGCCGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGG
CAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGCGCACGCGCATCTGGCTGGGCTCCTACGCCACCCCCGTCGCCGCCG
CGCGCGCCTACGACACGGCCGTCTTCTACCTGCGCGGCCGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTG
GCGCTGTCGTCGCCCGAGGCCGCCGAGGCCGGCG------GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCT
GTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTGCAGACCGGCATGACCACCATGG
TCGCCGCGCCCGCGCACCACCGCGAGCGGCAGCGGCTCCACCACCACCACCACCAC---GCGGAGCCGCACGGCGAGGAG
CTGCACCGCCACGTGAAGCAGCAG--------------------------------------------------------
--------------------------CGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------
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---------------------------GGCGCCGAGCCCGGACACCTCCGACGCCGAGGCCGAGTGAAGCAGCTAGGCAT
CAAAGAGAAGCAGCGGCTTCCAGTCCAGCCATCCACAACCCGCCGCCCATGCAGCTAGCTAGTCTCCGGAGAGCCGCCAG
CCGGCGTGTGATCAATCAGGTTCAGCACAAGCAGCTCAATCCAGTCCACCCACCCACCTACTGTTCCGCCTGTCTCCCTA
GCAAGCTCCGCCGGGTGCGCGTCGGAGAGG----GCGGCGAGGTGCCGGTGGTCGGTGGGTCGGTGGCCGGATTTTTCAA
TACGTCGTTCTGGATAAGAACAAGGGAGGGGGAGGGGAGGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCAAAA
AAGACAGCTGTAACAGT-GATAAAACAATCGCCACCATCTTCTTTTCTCTCTCTCTCTCTCGCCGTCTCTTGCTGGCTGT
TATCGAGTAGATAAGCATCAATTAGCAGTACAATTTTCTGTTAATTAATCGTCCCAGTTGGCCGACGCCATCGCCGCCTC
CGTTGTTACTTGTTAATTGCTGGGTGCATCGCTTCTGGATTTTGATCTGGTATAC-----AATTGATCCGGTGGTTCGTA
CGTATCCA----GTCGCTG-----GGCTTAATCCGGGTGTCTGCTGGTGGGAGCAGCAGCAAAGCGAGCATATCCGCGTT
AGGTTAGGCATCGGCAGCCAGCCAGCCAGCCAGCCAGCATGCACTAATCAGTCGGGGGTGAGACTTTTCTCCGTCCATGT
CTCCG---CTGCATGCGTGCGTCTGAATCCGAACGCGCCGGTGCAATTATGGATCAG-----------GGATTGGTACCG
------------------GTGGCTAATCTAATCGCCAACGCCAACGAACCAAGTGGAGCGAGCTGCATGAGTAGTAGCA-
-----CAATTGGGCAGAGGGGTCGTAGGTGGATTACTAGTGCATGCTGCATGATGGCGTGTGTGTGTGTGGGTGATTGGT
TTTGGTTGGGTTGGGTTGGGTGGGTATTAGGCCAAGGCC-AGGCCACCACATCGGCTGGAAAGCAAAGCGACGCCCAGAG
CTCCGGCCTGATGATGATTGCGT--------------------------------
>chr2B_9
--------TTTCTTCCTTTTGCGGGGGTAAGGATAATCTTT-TCATTGCCTAGTCAGATTTGTCATGTAA---GACATGC
----ATATTTCTTCTATAATTTGTCCTTATTGTATACTCAAAGCGATTACTTGTTGACCCGAAG--ATGTGAATGGAACT
TGGACAAGAAGAAACCAGAGCGGCAACGGAGGTCAACAAAATTACAGCGTTGCGACAAGTGCGCAGGAA-----GGTTGG
TGAGCAACAGAGAAGGATTGATCGAATGTGACGTTGCGGTCATCTTATCGTAAT--TTACCACGAGAAAGAACCTCTCAA
G-TTTTTTC---TTGGACCAGCGAC--AACAACGATGTTGCTCGCTTCTGTTTCCACAGT--------------------
----------------------GAGAGTAAATAACGAATTGTGCACCAGATACAATGCAAATTCCAGTTCCGAGGCAACC
AATTCGCCACGCTAGCTTGTCCATCAGCTTCAGATCAAGCAGCCATGAGTTGACGCTAGCTGTGCCGGAAGTATA----T
ACAGATACAAATACGTAC-A--ACCGACCGATGTTGCTTCGGAGAATTGTACGTATGCACGTATCGGCTACTGGTCCAAT
A--------TACGTACGGATATGCATGGGCCTCTG--------------------------GGTGGGCCTAGCGATTTGG
GGTGCCGCTGGCCTGGCTCGGATCGGGTCAGGCTCCCTTCCAAACAGCACAGTAGAGTACACTGCTGCTGCTGCCGCTGC
TGCCGTCGATGTCCTCT--TCTCTTCTCCCTCCCGAGCGGAGCTAGTTTATGATTATCCCAACCAAACTCTAATCATACC
CCCACCCACAAAATCCCAATACAAATACCACCGCCCAGCAAATAGATAGATAGCCCGG-----ACTGGAGGGAGGGAAGA
GAGAGAAACCAGCTC-------CTGCAAACCAAAAGCTACTCCTCCTTTGCGCACGCGG----CAGG---------GAGA
GAGCAGCCGAGGCGGCGGCCGGCGGCTAGCCAGCATAGGAGCTTAGGTAGGTGGTAGGCAGCTCA----GCTTCGCTCAT
GCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCAAGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGG
CCATGGCGCCTTTGGCGGCCGCGGCCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACCGTGGCCGTGGCGCCGCCC
ATCCCCATGGCGATGGCGATGCCGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGG
CAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCGTACGCCACGCCCGTCGCCGCCG
CGCGCGCCTACGACACGGCCGTCTTCTACCTGCGCGGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTC
GCGCTGTCGTCGCCCGAGGCCGCCGAGGCCGGCGCTGCCGGAGGGGAGATGGCGGGCGAGCTGGGCGACGGCGGCGCGCT
GTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAAGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACGATGG
TCGCCGCGCCCACGCACCAACGGGAGCGGCAGAGGCTCCACCACCACCACCA---C---GCGGAGCCGCACGGCGAGGAG
CTGCACCGCCACGTGAAGCAGCAG--------------------------------------------------------
--------------------------CGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------
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---------------------------GGCGCCGAGCCCGGACACCTCCGACGCCGA------GTGAAGCAGCTAAGCAG
CAAGAAGAAGCAGCGGCTTCCG-----GTCATCCACAACCAGTCGACCATGC----AGCCAGTCTCCGGAGAGCAGCCAG
CGTATGATCAACC-ATCAGATTCAGCACAACCAACTCAATCCAGTCCGCCGACCCACCTACCGTTCCGCCTGTCTCCCTA
GCAAGCTCCGCCGCGTCGGT------GAGGGCGCGCGGCGAGGTACCGGTGGTCGGTGGGTCGGTGGCGAGATTTTTCAA
TACGTTGTTCTGGATAAGAACAAGGGAGGG-GAGGGGAGGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCAAAA
AAGACAGCTGTAACAGT-GATAAAACAATCGCCACCATCTTCTTTCTTTTCTCCCTCTCTCC----------CTGGCTGT
TATCGAGTAGATAAGCAGCGATTAGCAGTACAAC-TTGTCTTAATTAATCG-CCCAGTTGGCCGACTCGATCGCCCCCTC
CGTTGTTA-------ATTGCTGAGTGCATCGCTTCTGGATTTTGATCTCGTATACAATTGAATTGATCCAGTGGTTCGTA
CGTACGTATCCCGTCGCTG-----GGCTTAATCCGGCTGTCTGCTGGTGGGAGCAGCAAAGCA--AAGCATATCCGCGTT
AGGTTAGGCATCGGCAGCCGGCCACCAT--------GCACTCATTAATCAGTT-GAGATGAGACTTTTCTCCGTCCATGT
CTCTG---CTGCATGCGTGTGTCTGGATCTGAATGTGCCGGTGCGATTATGGACGAGGGCGTCGTGGCGGATTGGTGCTG
------------------GTGGCTAATCTAATCGCCAACG------AACCAAGTGGAGCTAGCTACATGAGCACGAGGCG
CCAG----------------------------------------------------------------------------
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>chr2D_990
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---------------------------------------------------------------CA----GCTTCGCTCAT
---GCAGGGCGAGTACCGCTCGTCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGG
CCATGGCGCCTCTGGCGGCTGCGGCCGCGGCGGCGGCGGCCAAGGAGGAGCACAACGTGAAGGCGGCCGTGGCGCCGCCC
ATCCCCATGGCGATGGCGATGCCGCTGG---------AGCCGAGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGG
CAAGTGGGTGGCGGAGATCCGTGAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCCTACGCGACGCCCGTGGCGGCGG
CGCGCGCCTACGACACGGCCGTGTTCTACCTGCGCGGGAGGTCAGCGCGGCTCAATTTCCCCGACGAGATCTCCGCGCTG
GCACAGTCTTCGCCCGAGGCCGAAGC---------------------------------------------CGGCGCGTT
GTCCGCCGCGTCAATCCGGAAGAAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGG
TCGCCGCGCCCACGCACCACCACGAGCGGAAGAAGCACCAGTCCGGCTCCTCCGGGGCAGGGGAGCTCGAGGGCGAGCTG
GGTGACGGCCCCGTGCTGCCCGCCGCGTCAATCCGGAAGAAGGCCATCGAGGTAGTGTCCCGCGTGGATGCGCTCCAGAG
CGGCATGATGATGGGCGCCTTGCCCACGCACCACGGCGAGCGGAAGAAGCACCATGCCGGCGCCTCCGGGTCAGGTGAGC
TCGAGGGCGAGCTGGCTGACGGCCCCGTGGTGCCCGCCGCGTTAATCCGGAAGAAGGCCATCGAGGTCGGGTCCCGCATG
GACGCGCTCCAGAGGGGCATGACGATGGGCGCCGCGCCCACGCACCACCGCAAGCAGCAG--------------------
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>SNPs
----S----------S--S----------------------S---------------S------------SSS-------
------------------------------------------------------------S---SS--------------
------S------------------------------------------------------------S------------
-------------------------------S-S----S-----S-------S---------------------SS----
------S-SSSS-------------------------S---------------------S--------------------
----------------------S----S--SS----------S-----S-------S---------S-S-S----S---S
---SS----S-SS-----SSSS-------------S---S---------------------------S-S---S------
----S---------SSS-S---------S--------S-SS-----------------------S-S-------------
-SSSSSSSS--S---S------------S------SSSSSSSSSSSSSSSSS----S--S------S----------S--
----S------SSS--S----S-----S----------------------------------------------------
S-----------------------------SS--SS--S----------------------------------S------
-----------------------------------------------------------------S--------------
-------S----------S----S--------------------------------------------S---SS-S----
---S--------------------------------------S-------S-----------------------------
-------------------------------------------------------S------------------------
-S----------------------S-------------------------------------------------------
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--------------------------S-SS-S------------------------------------------------
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-------------------------------------------S----------------------------SS------
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-------------------------------------------------------------------------S------
-S----------------S-S-----------------------------------------------------S-----
-------S---------------------------------SS-------------------------------S-----
--S-----------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------S-----------------------------S--------------------------------
----------------------------------S---------------------------------------------
--------------------------------S--------------S--------------------------------
------------------SSSSSS--------------------------------------------------------
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-----SSS--------S------------------------S-----------------------------SS--S-SSS
SSSSSSSSSSSSSSSSSS--------------------------S----SS------S----------------SSS-SS
SSSSS---S--------S-----------S-------S--SSSSSS----------------------------------
---------------------------------------S---------------SS------------S-------S--
--------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_500
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AATCGGCCATGTCAGCTTCA------------------------------------------------------------
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>reverse_2101
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--------------------TTCCAGTCATCCACAACCCG----------------------------------------
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