>input_sequence_70635
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--------------------------------------------------ATGACGTTCGGAGGAATCTTTAGCTTGCCC
GGCTACATCCTGTTCGGGGACAAGGAGCAGGAGCGAAAGCTGCGGAAGCGAAAGAAAAAGCTGCAGCGAGAGCGTAAGCT
GAGGCTCCGACAGGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGCTGCAGTGGCTGCTGCTACGGCAACAACCCGGGAAGC
TGCGGGGCACGCAGGGGTTCTCTAGTGAGTCACTGGCAGTCGCTCGTTCGAGCAACTCAGTAGCAGTCC-----------
----------------------------------------------CTCGTGGGTACGAGCGACAGAGGGCGCATGGGTT
CTCTAGTGACTCACTGGCGCTCGCTCACTCGAGCAACTCACTGGCACTCCCTCGTGTTCGTGGGTACGGGCAACTTGGGG
GGCAGGGGCAGGGGTACTCTAGTGACTCACTGGCAATCGCTCGCTCGGGCAACTCATCGGCAGTCCCTCTTGGGTACGGG
CCACAGGATGCACATAAGTTCTCCTCACCGGCAGTCCCTCGTGGGTACGAGGAGGAGGACTTCAGTGCCTCCGACGATGA
GGACGACGAC---GAGGACGACGATGATGAAGATGACGATGATGCCTTCGAAGAAGACGACGAGGACGAAGATGATGAGG
ATGATGAGGAGGTGGAGGAAGAGGAGCACCGCCGGTTGATGCTGCTGACGCTC---CAGCAAGGGGGGCAAGGGGTCCCG
CGCGTACACCCAGGGGGGAGACTTGAGTGGGTGTGA--------------------------------------------
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>chr4A_1_TraesCS4A01G481900
TTACTCTAGCCTCTGATAATATGTACTCTAGTCATATATGTATAACACTACAATATTTGCCTCTAACCTGCATAGACCCC
ATATACATCAATTCATCCAAAGTTGTAATTATCTAAAGCCTCTAAAAGGATATGATATGATATTTGAAGACACTACAACG
TTTATGAAAGTACTTCACTGCTCAAAATTTTATGTCCAAATTTATTAAATT-TTTTGGGTAGGTTTCATATTTTCAGCTA
GGTAAA----TACACTACTTATGATTATTACATTATTATAATCTAATTTACTGAAGGCAAAATGACTAGCTTTAGAATTA
ATATTTGAAAAGTTTGAGTCGCCGTATAATTAGTAGAACATTAAGATGTTGCCCGTGCATTTGGGCAGGCCACTCTCCAA
GTCTATGTAATAGTGCAAGTGCATCTTAAGGCAGAGATTTGGCTCTTTTTTTATAAGTAGT--ACATACTAAGGTGAGTG
AGCATTTTTGGGTCCCAGATTCGTTTGAGCTTGGGATCTAATTTTCTTGAAAACCACACTTGCAAAATTGGAAATTTCTG
AAAACATTT--ACAAGTAAATACTTTGTAAAGCTTCCATTGACAAACTTTCACTGAAAAACTTTCAACTTTACGCCCTGT
GTGAAAAATATTAGCTTGATAAAAAAAACCAAGGCTCAAATTTGCCCAAGATACATCTGGGGTTTCGGTGCTGAAATATA
ATAACTGGATAAGAATTACTTCTAGGTAATTAGCAATTAAGAAAAGAATAGAATCTTTGCTTTTATCAATCATAGGTCAC
ATATGGCATACGAATAGGATCATTTACATGGTTAGGACGATATACCTTCCCGGATGGACTAGAATAAAATGCTAAAGCAA
ACATATGGGAGCACAAATGCTCCCACTTGCACCCATGGCAGGGCAGCTAACTCGCGCCTATATATAAAGCCAATCCATAC
AACGCAATGCACACAAGCCATAGATAGATAACCAAG-CAGACAGTTAGCAATGACGTTCGGAGGAATCTTTAGCTTGCCC
GGCTACATCCTGTTCGGGGACAAGGAGCAGGAGCGAAAGCTGCGGAAGCGAAAGAAAAAGCTGCAGCGAGAGCGTAAGCT
GAGGCTCCGACAGGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGCTGCAGTGGCTGCTGCTACGGCAACAACCCGGGAAGC
TGCGGGGCACGCAGGGGTTCTCTAGTGAGTCACTGGCAGTCGCTCGTTCGAGCAACTCAGTAGCAGTCC-----------
----------------------------------------------CTCGTGGGTACGAGCGACAGAGGGCGCATGGGTT
CTCTAGTGACTCACTGGCGCTCGCTCACTCGAGCAACTCACTGGCACTCCCTCGTGTTCGTGGGTACGGGCAACTTGGGG
GGCAGGGGCAGGGGTACTCTAGTGACTCACTGGCAATCGCTCGCTCGGGCAACTCATCGGCAGTCCCTCTTGGGTACGGG
CCACAGGATGCACATAAGTTCTCCTCACCGGCAGTCCCTCGTGGGTACGAGGAGGAGGACTTCAGTGCCTCCGACGATGA
GGACGACGAC---GAGGACGACGATGATGAAGATGACGATGATGCCTTCGAAGAAGACGACGAGGACGAAGATGATGAGG
ATGATGAGGAGGTGGAGGAAGAGGAGCACCGCCGGTTGATGCTGCTGACGCTC---CAGCAAGGGGGGCAAGGGGTCCCG
CGCGTACACCCAGGGGGGAGACTTGAGTGGGTGTGATGACGCTGCAAGCAACAGCCGGCGGCGGCACTGTCACTCCTGCC
GCAAGTGTGGCAAACAGCAGTGCAGGAGTGTCACTACCTATACGTACATAAATTATGGTA-CGTACTAGTATATGTTTGC
TGTCTGCATGCAGGTGAGGC------TGGAGTG---------CGATTTAAATAAATAATACTCCTAGTGTCTGTAACTAA
ATCCAAGTAATTTGTACTCCCGATGTATGGACGATGCTCTGCATCCGCTCTTTTGTGCCTGTATAACACTTCACCCTTTG
TCGAACCTACAGACTCCGATTTGT--------------------------------------------------------
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---------------------------------------------------------------------TGCCACGTGTG
ATGGACTGCGATTTAAATAAATATTCCTCAT---AGTATGTGTAATTTAAATAGAAGTAAATTCTACTCCCGGTAAATAA
ATTCTGCTTATGTTTGTGCGCGCCAAGCTTAAATTTGCTTTGATCGATCGAGCTGATGATCTAGCTACAGTGAAATGCTT
CACTAGTCCATGTGGCATGTTTTTCTCCTCTCTAATCAGTTTTGGCCTTATTTGATCAAATGAACAAGTTTGTGGACTAA
ATATGATCACTTTCTGAGTTGATGGCCTAAC-------------------------------GGCGCATTTCACTCATCT
AGCAAGGTAAGATGTAAGTACGTACGGGGCGATGAATTGATTTCACGGCTTCTGCTGGTGTTATTGGGTTTTTGAAAAAG
GGTGAATTTTATTAGCTTAAAATGAAGCATTAAGATAATACAAACACGATGAGTACACACCCGGCCTCTGCATAATTAGG
ATGGACACAACC-AAACTGTCTGCTGGGGTTATTGGTTGGTGTCAAACCTGTCTGTATAACATATCATCTTGGGTCACGT
GTCAAGGATTGGTGGT-------TCAGCGGGAGATATAAAAGAGGAAGGAAGAAGCAGC---------------------
----------GCATCTTACCAAACAGAAGAGAATCAGCTTCATCCATCCCCTCCCCACTCCCTTGTTGTTCTTCCTCTTT
ACCCCATACCTCTATTTGAAACCTTGTATCCTGTATCAAGTCTGCTGATT-
>chr7A_1
TTACTCTAGCCTCTAATAATATGTACTTCAGTCATATATGTATAACATTACAACATTTGCCTCTAACCTGCATAGACCC-
ATATACATCAATTCATCCAATGTTGTAATTACCTAAAACCTCCGAAAGGATAAGATATGATATTTGAAGACACTACAACA
TTTATGAAAGTACTTCATTGCTCGAAATTGTATGTCCAAATTTATTGAATTATTTTGGGTAGGTTTCATATTTTCAAATA
GGTAAA----CACACTACTTATGATTGTTACTTTATTATAATCTAATTTACTGAAGCC-AAATGACTAGCTTTAGAAGTA
ATATTTAAAAAGTTTGAATCGTCATATAATTAGTAGAACATTAAGATGTTGCCCGTGCATT----CAGGTCACCCTGCAA
GTTTATGTAATAGTGCATGTGCATCTTTAGGCAGAGATTTGGCTATTTTTT-ATAAGTAGT--ACATACTAAGGTGAGTG
AGGATTTTTGGGTCTCAAATTCACTTGAGCTTGGGATCTAAGTTTCTTGAAAACCACACTTAAAAATTTGGAAATTGCTG
AAAACATTTACACAAGTAAATACTTTGTAAAT--------------CTTTCACTGAAAAACTTTCAAGTTTACGCCCTGT
GTGAAAAATATTAGTTTGATAAAA-AAACCAAGGCTCAAATGTGCCCAAGATACATCTGGGGTTTGGGTGCTGAAATATA
ATAACTGGATAAGAATTACTTCTACGTAATTAGCAATTAAGAAAAGAATAGAATCCTTGCTTTTATCATTCATAGGTCAC
ATATGGCATACGAATAGGATCATTTACATGGTTAGGATGATATACCTTCCCGGATGGACTAGAATAAGATGCTAAAGCAA
ACATATTGGAGCACAAATTCTCCCACTTGCACCCACGGTAGGGCAGCTAACTTGCGCCTATATATAGAGCCAATCCATAC
AAAGCAATGCGCACAAGCCATAGATAGATACCTATAACAGATAGTTAGCAATGACGTTCGGAGGAATCTTTGGCTTGCCC
GGCTACATCCTGTTCGGGGACAAGGAGCAGGAGCGAAAGCTGCGGAAGCGAAAGAAAAAGCTGCAGCGAGAGCGTAAGCT
GCGGCTGCAGCAAGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGCTGCAGTGGCTGCTGCTACGGCAACAACCCCGGCAGC
CGCGGGGGACGAAGGTGTTCTCTAAAGAATCACTGGCAGTCGCTCGTTCGAGCAACTCAGTGGCAGTCC-----------
----------------------------------------------CTCGTGGGTACGAGCGACAGGGGGCGCATGGGTT
CTCTAGGGACTATTTGCCGGC---------------CTCAGTGGCAGTCCCTCGTGATCGTGGGTACGGGCAACTTGGGG
GGCAGGGGCAGGGGTTCTCTAGTGACTCACTGGCAGTCGCTCGCTCGGGCAACTCATCGGCAGTCCCTCGTGGGTACGGG
CCACAGGATGCACATAAGTTCTT---ACTGGCAGGCCATCGTGGGTACGAGGAGGAGGACTTCAGCGCCTCCGACGATGA
GGACGACGAC---GAGGACGACGATGATGAGGATGACGAGGATGCCTTCGAAGAAGACGACGAGGACGAAGATGATGAGA
ATGACGAGGAGGTGGAGGAAGGGGAGCACCGCCGGTTGATGCTGCTGACGCTC---CAGCAAGGGGGGCAAGGGGTCCCA
CGCGTACACCCAGGGGGGAGACTTGAGTGGCTCTGATGACGCTGCAAGCAACAGCCGCCGGCGGCACTGTCACTCCTGCC
GCAAGTGTGGCAAACAGCAGTGCAGGAGTGGCACTACCTATACGTATATAAATTATGGTATCGTACTAGTATATGTTTGC
TGTCTGCATGCATGCAGCCTCACCCGTGGAGTG---------TGATTTAAATAAATAACCCTCCTAATGTCTGTAACTAA
ATCCAAGTAATTTGTACTCCCGATGTATGGACGATGCCCTGCATCCACTCTATTGTGCCTGTATAACACTTCACCCTGTG
TCGAACCTAGTGACTCCGTACGTGCGTGCATGGATAGTGGATAACCTCATTGGCGCTTACTACCTACCTATATACTTCCT
CCGTTTT----------------------------------CAAATATAAGTCTTTCTAGAGATTTCAACAAATGACTAC
ATACGAAGTAAAATGAGTGAATCTACACTATAAAATATGTCTACATACATCCGTATGTTGTAGTCCATTTGAAATGTCTA
AAAAACTTATATTTAGGAACGGAGGGAGTAAATTTTTGCTGTGTGCATGCATGCAGTCTCAC-TGTGGATGCCACATGTA
ATGGACTGCGATTTAAATAAATATTCCTTGTACAAGTATGTGTAATTAAATCC-AAGTAAATTGTACTCCAGGTAAATAA
ATCCTGCTTATGTGTC--TGTACCAAGCTTAAATTTGCTTTGATCGATCGAGCTGATGATCTATCTAGAGTGAAATGCTC
CACCAGTCCATGTGGCCGGTTTTTCTCCTCTCTAATTGGTTTTGGCCTTATTTGATCAAATAAACGAGTTTGTGGACTAA
ATCTGATCACTTTCTGAGTTGATGGCTTAAAGTGTGTAATCAATTTGAGTTTATGGACTAGTGGCGCATTTCACTCATCT
AGCTAGGTAAGATGTAAGTACGTACAGGGCGATGAATTGATTTTACGGCTTCTGCTGCTGTTATTGGTTTCCTGAAAAGG
GTGAATTTT-----------------------------------------------------------------GTTAGG
ATGCAACCG----AACCTGCCTCCTGGTGTTATTGGTTGGTGTCAAACCTGTCTGTATAACACATCATCTTGGGTAACGT
GTCAAGGGATGGTGGG-------TCAGCGGGAGATATAAAAGAGGAAGGAAGAAGCA-----------------------
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---------------------------------------------------
>chr7D_1
TTACTCTATCCTCTGACAATATGTACTTCAGTCATATATGTATAACATTACAAAATTTGCCTCTAACCTGCATAGACCC-
ATATACATCAATTCATCCAATGTTGTAATTACCTAAAACCTCCGAAAGGATATGATATGATATTTGAAGACACTACGACG
TTTATGAAAGTACTTCATTGCTCGAAATTGTATGTCCAAATTTATTGAATTATTTTGGGTAGGTTTCATATTTTCAATTA
GGTAAATAAATACACTACTTATGATTATTACTTTATTATAATCTAATTTATTGAAGCCAAAATGACTAGCTTTAGAAGTA
ATATTTAAAAAGTTTGAATCATCATATAATTATTAGAACATTAAGATGTTGCCCGTGCATTTGGGCAGGCCACCCTCCAA
GTTTATGTAATAGTGCATGTGCATCTTAAGGCAGAGATTTGGCTATTTTTT-ATAAGTAGTGTACATACTAAGGTGAGTG
AGGATTTTTGGGTCTCAAATTCATTTGAGCTTGGGATCTAAATTTCTTGAAAACCACACTCAAAAACCAC----------
---------ACACAAGTAAATACTTTGTAAAT--------------CTTTCACTGAAAAACTTTCAAATTTACGCCCTGT
GTGAAAAATATTAGTTTGGTAAAA-AAACCAAGGCTCAAATGTGCCCAAGATACATCTGGGGTTTCGGTGCTGAAATATA
ATAACTGGATAAGAATTACTTCTAGGTAATTAGCAATTAAGAAAAGAATAGAATCTTTGCTTTTATCAATCATAGGTCAC
ATATGGCATACGAATAGGATCATTTACATGGTTAGGACGATATACCTTCCCGGATGGACTAGAATAAAATGCTAAAGCAA
ACATATGGGAGCACAAATGCTCTCACTTGCACCCACGGCAGGGCAGCTAACTCACGCCTATATATAAAGCCAATCCATAC
AAAGCAATGCACACAAGTCATAGATAGATAACCAAG-CAGACAGTTAGCAATGACGTTCGGAGGAATCTTTGGCTTGCCC
GGCTACATCCTGTTCGGGGACAAAGAGCAGGAGCGAAAGCTGCGGAAGCGAAAGAAAAAGCTGCAGCGAGAGCGTAAGCT
GCGGCTGCGGCAGGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGTTGCAGTGGCTGCTGCTACGGCAACAACCCAGGCAGC
TGCGGGGGACCCAGGGGTTCTCTAGTGAGTCACTGGCAGTCGCTCGGTCGAGCAACTCAGTGGCAGTCCCTCGTGGGTAC
GAGCGACAAGGGGCGCATGGGTTCCCTAGTGACTCACGGGCAGTCCCTCGTGGGTACGAGCCACAGGGGGCGCATGGGTT
CTCTAGTGACTCACTGGCGGTCACTCACTCTGTCAACTCACTGGCAGTCCCTCGTGGTCGTGGGTACGGGCAACTTGGGG
------GGCAGGGGTTCTCTAGTGACTCACTGGCAGTCGCTCGCTCGGGCAACTCATCGGCAGTCCCTCGTGGGTACGGG
CCACAGGATGCACATAAGTTCTT---ACTGGCAGGCCATCGTGGGTACGAGGAGGAGGACTTCAGCGCCTCCGACGATGA
GGACGACGATGATGAGGACGACGATGATGAGGATGACGATGATGCCTTCGAAGAAGACGACGAGGACGAAGATGATGAGA
ATGACGAGGAGGTGGAGGAAGGGGAGCACCGCCGGTTGATGCTGCTGACGCTCCAGCAGCAAGGGGGGCAAGGGGTCCCG
CGCGTACACCCGGGGGGGAGACTTGAGTGGCTCTGATGACGCTGCAAGCAACAGCCGCCGGCGGCACTGTCACTCCTGCC
GCAAGTGTGGCAAACAGCAGTGCAGGAGTGGCACTACCTATACGTATATAAATTATGGTG-CGTACTAGTATATGTTTGC
TGTCTGCATGCATGCAGCCTCACCCGTGGATGCCACGGGTGTCGATTTAAATAAATAATCCTCCTAGTGTCTGTAACTAA
ATCCAAGTAATTTGTACTCGCGATGTATGGACGATGCTCTGCATCCACTCTATTGTGCCTG--TAACACTTCACCCTGTG
TCGAACCTAGTGATTCCGTACGTGTGTGCATGGATAGTGGATGACCTCATTGGCGCTTACTACCTATCTACTACCTTCGT
ACCAAAATACTTGTAGCTGGGGAAACTAATACAAGTTCCTCCAACTATAAGTATTTCGTTACAGAGCGAGTAGTATATAA
ATTATGGTACA---------------------------------------------------------------------
----------------------------TATATTTTTGCTGTGTGTATGCATGCAGTCTCACCTGTGGATACCACGTGTA
ATGGACTGCGATTTAAATAAATATTCCTCAT---AGTATGTGTAATTAAATCC-AAGTAAATTGTACTCCCGGTAAATAA
ATCCTGCTTATGTGTGTGTGTACCAAGCTTAAATTTGCTTTGCTAGATCGAGTTGATGATCTAGCTAGGTA---------
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--------AAGATGTAAGTGGGTACGGGGCGATGAATTGATTTTACGGCTTCTGCTGGTGTTATTGGTTTTTTGAAAAAG
GGTGAACATCATTATCTCAAAATGAAGCATTAATAGAATACAAACACGATGAGCACATACCCAGCCTCTGCATAGTTAGG
ATGCACATAACCAAACCTGTCTGCTGGTGTTATTGGTTGGTGTCAAGCCTGTTTGTATAACACATCATCTTGGGTCACGT
GTCAAGGGTTGGTGGGTCAGCGCTCAGCGGGAGATATAAAAGAGGAAGGAAGAAGCAACACTAGGTGAGAACCGAACTAT
CCCCTCTCCTGCATCTTACCGAACAGAAGAGAATCAGCTTCATCCATCCCCTCCCCACTCCCTTGTTGTTCTTCTTCTTT
ACCCCATATCTCTCTTTGAAACCTTGTATCCTGCATCAAGTCCTGCTGATT
>SNPs
---------------------------SS------------------S-----S-------------------------S
--------------------S----------S-----S----SS------------------------------------
-----------------S-----S-----S----------------S-----------------------------SS--
-------------------------------S------------------------S--------------------S--
------S----------S---S-S-------------------------------------------------S------
--S--------------S--------------------------S------S----------------------------
--S-----------S--S----S------------------S-------------------SS---S---------S---
-------------------------------SSSSSSSSSSSSSSS---------------------S------------
--------------S---------S----------------S--------------------------------------
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-----------------------------------S--------------------------------------------
--S--------------------------------------------------------------------S--------
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-S----S--S---------------------------------------------------------------S--S---
-------S-----------------------------------------------------S------------------
------------------------------------------------------------------S-------------
-------------------S--S-------SSS-------------S---------S-----------------------
---------------S-------------------S---------------------------------S----------
----------------------SSSS--S-----S--S---------------------------S--------------
------------------------------S------------------------------------------------S
----S----------------S----------------------------------------------------------
------------------------------S-S------------------------S----------------------
------------------------------S---------------S---------------------------------
------------S-SSSSSS---------------------------------------S--------------------
----------------------------------------------S----S-------------------------S--
---------SS-------SSSSSS--------------------------------------------------------
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-------------------------------------------------------------------------------S
-----------------------------------------------S--SSSS---------S----------------
--S----------S----S-SS---------------------------------------------S-----------S
---S------------SS------------------SS-----------------------S---S--------------
--S-----------------------S---S-------------------------------------------------
---S---------------------------------------S-----------------------S------------
---------S----S--S---------------S-S-----------------S---S----S-----------S-----
---S-----------S-----------S----------------------------------S-----------------
-------S-------S-----------------------------------------S----------------------
--------------------S-----------------------------------------------------S-----
--------S----S-------------------S--------SSSSSSS--
>forward_498
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-----------------------------------------------------------------------------GTG
AGCATTTTTGGGTCCCAG--------------------------------------------------------------
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>reverse_1685
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----TGAGGAGGTGGAGGAAGAGG--------------------------------------------------------
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>forward_1380
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CTCTAGTGACTCACTGGCGC------------------------------------------------------------
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>reverse_2499
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------------------CGCGCCAAGCTTAAATTTGC------------------------------------------
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---------------------------------------------------
