>input_sequence_70612
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-----------------------CTATATAAACCTTCACTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAG
GCTCATAGCTCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATACCATCATGCACCACTTTTCCAAGAGCCACTTGGTA
TTCTCATCCTTTTCATCCTCACCTGGTGCATCTCGAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCACT
TGTACTGTCTCCCCGACAACCTCGACGCCGGTCCTCGCCGAGACGAAGATATCGAAGGCACCAAATAAGAGTGAATATGA
TGAGATGAATGCGACGCAGTCAGATGCCGAGGTAGCCATGAGAAAGATGGGACTTGATTTTGATCAAGAGAAAAGCTGCG
AATATATTTCTACGCTTTTCGATGAAGACGAGCCAAGCTTCAAGGAAGTGAAAATGGCATTCTTGGTTTTTGATGAGAAC
AATGATGGGTACATCGATGCATTGGATTTGCGACGAGTCCTCCACAACTTAGGGTTAGGCGACCGGGTAGGGGTCAATGA
GTCTGAGCAGATGATTGCTAGATATGACATGAACAATAACAAGAGGTTAGATTTGATGGAGTTCACTAAGGTTTTGGAGG
ACAGCTTTTGCTAGACCCCTTTATTTCTGTATTTGTTTTCCTATATCTGTGAGATGCATTTACGTGTTGTGATTGACTGA
ATTCCGCCACTTGATTCGAGAGCTAA------------------------------------------------------
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>chr1D_1_TraesCS1D01G402400
ACTTTGCTTCTTCAGTCATATCAAGGACTGGTATGGTAACCTACTAACCTCCCAAAAGACAATTTGTTCAAGTACTCCCT
TCATTCCCTTATACAAGGTCACTTCATTTTTCGTGTCAAACTTTGACTTATAATTTTGGTCAACAAAATATGAATTATAT
GTCATCAAAAATATATCATTGGAAAGTTCTTTGAAATATGCATTCAATAAAATAACTTTTGTGGCATATAACTCACTTTT
TGTTGGCAAAATTACTGGTCAAAGTTAGACATAAAAATATGAAGTGGCCTTGTATAAGGGAATGGAGGGACTAACAATT-
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------------------AATTTCTTGGACGATGAACACCGATAACTCAGCGATGAACAAGTCTAGACCTTCACCGCTGT
CAAGAAATCGGAATCATCTTGACAAGCAAGATTTGCACAAGGCAATGAATTAACTCTGATATACTAAGTTACAGAAGAAT
ACTTCTACTCAAGTCTCGAATCTTCTTCAGAAGAAGATGTCCCTCAGGTCTCGATCAAGTCTTGTTCTTTTTCCAAGGAA
ATACCGGCTTCTTGCTTTCCCTGAAATTTCTGTGTAAGTACCATGCATATAGCATATTCAACTTGGGAAAAAGGAGTCA-
AAACTGCGCATTCC-------CCTGGTAAGAACATTTATTTACACATCATGTCCTGTC----TCCCAGCATGGACAGAAC
GACGGAGCCAACCACAGTGTGTGAACTCAACTAAGTAGTACCACGTCATGGCGGCACCGAACATGCATCAGACTTTTGCG
TGTGGGAGG--AGAGACTTTTCCAGGAAACATCCAGTGGAGTAAAAGAAGATTGAAAGAAGCAACAAAAACCACGACCAT
GCACACACTCTTTGAATCTTAGACAACAAGTCATCATCTTG---------------------CATAAGTTTTTTCAAAGT
GGAAACATCCTTTCATCTGCCTAGATCTTTCAGACTGGTTCTGTCGT-------TGAAGCTACAAGCCTAGAAAA--CAA
ACAAGAAACAACAACTTCCCTTCCTATATAAACCTTCACTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAG
GCTCATAGCTCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATACCATCATGCACCACTTTTCCAAGAGCCACTTGGTA
TTCTCATCCTTTTCATCCTCACCTGGTGCATCTCGAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCACT
TGTACTGTCTCCCCGACAACCTCGACGCCGGTCCTCGCCGAGACGAAGATATCGAAGGCACCAAATAAGAGTGAATATGA
TGAGATGAATGCGACGCAGTCAGATGCCGAGGTAGCCATGAGAAAGATGGGACTTGATTTTGATCAAGAGAAAAGCTGCG
AATATATTTCTACGCTTTTCGATGAAGACGAGCCAAGCTTCAAGGAAGTGAAAATGGCATTCTTGGTTTTTGATGAGAAC
AATGATGGGTACATCGATGCATTGGATTTGCGACGAGTCCTCCACAACTTAGGGTTAGGCGACCGGGTAGGGGTCAATGA
GTCTGAGCAGATGATTGCTAGATATGACATGAACAATAACAAGAGGTTAGATTTGATGGAGTTCACTAAGGTTTTGGAGG
ACAGCTTTTGCTAGACCCCTTTATTTCTGTATTTGTTTTCCTATATCTGTGAGATGCATTTACGTGTTGTGATTGACTGA
ATTCCGCCACTTGATTCGAGAGCTAAATAACTGGTCTGTTGTTTTTTTTTCTTTCCTTTTTGAAAAAAGGGTTTGGCATC
TAGCATTGCCACTAGCTATCTTTC--TTTTATTGCGAGAGAAATTTTCAATCTATTCATCAATCATGGCAGTACTGAGAA
AACTTGAGGTAATAAAGGTACAATCAGGTC-----CATGGATCACCTAGCGACGACTACAAGCACTGAAGCGAGTCGAAG
GCGCAGCGCCGTCATCGCCCCTCCCTCACGAGAGCTGGAAAAATCTTGTTGTAGTAGATAGTCGGGAAGTTGTCGTGCTA
AGGCCCCAATGAAACAGCGCACCAGAGCAGCAACCATCATCGATTGAGAGAGTTGTAGATCGAAAATATCAAACATGTAA
CCACATGAACGAAGACGAACAAAAGCTGGATCTAAATAGATCCATCGAAGATCAGCATCAACTGAATCCCACGATATCCG
ACGAAGACACACCTCCACACATTCCTCCGACGACGCTATTCGCCACTAGCTATCCTACATGCATGACTGTGGATTGCGAT
GAATCCCAGCCCATCATCACCAAGGATCATGCAAGATCCCCCAAAAGAACACATACCCGTTTGAGAACTGGATGTACCCA
ACCAGCATTCAGGTACAACACCATGAAAAAGGGTTTCCCCCGCTTTATATTATAAAGCACAACCTCCAAGCATCCAACAA
CATAAGAGTAGTACAGGACAGAGTACAGAAAGCAAATAAATGAGGTCCGGCTGGGGGCACAGCCAAACAAGCCCCAACTA
CAAGGAAAAGAACTCTAGTCAAGCTCCGGTGGTGGTGGTGGTGATGGCGGGGACATCGCGACAGCCGAAGAACGAAGACC
GGCGACGATGGAGTCAATGGAGCCACGATCACACCGCTTGCTAAGCGGTCTCCAGAGCTGTAGAAATCCACACATTTTAA
AGATGGCGTCAGTGACACAACAAGGAATGACATGCTTGATCACTAATTTATCACGACAGTTCCAGAGGGTCCA
>chr1B_1
ACTTTGCTTCTTCAGTCATATCAAGGACTGGTATGGTAACCTACTAATCTCCCAAAAGACAGTTTGTTCAAGTACTCCCT
TCATTCCCTTATACAAGGTCACTTCATTTTTCGTGTCAAACTTTAACTTATAATTTTGGTCAACAAAATATGGATTATAT
GTCATAAAAAATATATTATTGGAAAGTTCTTTGAAATATGCGTTCAATAAAATAACTTTTGTGGCATATAACTCGCTTTT
TGTTGGTAAAATTACTGGTCAAATTTAGACATAAGAATATGAAGTGGCCTTGTATAAGGGAATGGAGGGACTAATAATTA
ATTTTTGAGTGTGGTTTTTCTACACCCCAGCTCGGTGCACCCACGGTGCACCCACACAAGAAAACATAGCATAACACTTC
AAAAAATTATGAAACTTTGTGGGAATGTTAATCAACAAATGTTACGAGCGCTTGCAAAGTTTGGTGGTCAAATAACATTC
AAGGAGCTCTATACAAAAAGACAAAATTATAAAATCTGCTCAAACAGTGCACTCACATTTTGACTAATTTTCAGTGATTT
TGTCTTTTTTGTATTGAGCTCCTCGAATGTTATTTGACCATCAAACTTTCAAGCGCCCATAACATTTATTGGTAAACATT
CTCACAAAATTCAGAATTTTTTGAATTGTTTTGCTATATTTTCTTGCGTGGGTGGACCGTGTGTGCACTGAAGATGGGTG
CAGCCACTACTTTCCCTCAATTTCTTGGACGATGAACACCGATAACTCAGCGATGAACAAGTCTAGACCTTCACCGCGGA
CAAGAAATCGGAATCATCTTGACAAGCAAGATTTGCACAAGGCAACGAATTAACTCTGATATACTAAGTTACAGAAGAAT
ACTTCTACTCAAGTCTCGAATCTTCTTCAGAAGA---TGTCCCTCAGGTCTAGATCAAGTCTTGTTCTTTTTCCAAGGAA
ATACCGGCTTGTTGCTTTCCCGGAAATTTCAGTGTAAGCACCATGCATATAGCATATTCAACTTGGGAAAAAGGAGTCAA
AAACTGCACATTCGGTTCTAACCTGATATGAACATTTATTTAGACATCATGTCCTGTATGTTTCCCAACATAGACACAAC
GAAATTGCCAACCACAGTTTGTGAACTAAACTAACTAGTACCACATCATGGTGGCACCGAA------------TTTTGCG
TGTGGGAGGGGAGAGACTTTTCCAGGAAACATCCAGTGGAGTAAAAGAAGATTGAAAGAAGCAACAAAGACCACGATCAT
GCATGCACACTTTGAATCTTAGACAACACGTCATCATCTTGCTGTCTTGTCTACTATTCTCCCATAAGTTTTTTCAAAGT
GGAAACATCCTCTCATCTGCCTAGATCTTTCATATTGATTCT---GT-------TGAAGCTACAAGCCTAGAAAAA-CAA
ACAAGAAACAACAACTTCCCTTCCTATATAAACCTTCATTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAG
GCTCATAGCTCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATGCCATCATGCACCACTTTTCCAAGACCCGCTTGGTA
TTCTCATCCTTTTCATCCTCACCTGGTGCATCTCAAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCACT
TGTACTGTCTCCACGACAACCTCGACACCGGTCCTCGCCGAGACGAAGACATCGAAGGCGCCAAAAAAGAGTGAATACGA
TGAGATGAATGCGACGCAATCAGATGCGGAGGTAGCCATGAGAAAGATGGGATTGGATTTTGATCAAGAGAAAAGCTGTG
AATATATTTCTACGTTGTTCAACGACGACGAACCAAGCTTCCAGGAAGTGAAGATGGCCTTCTTGGTTTTTGATGAGAAC
AATGATGGGTACATCGATGCATCGGATCTGCGACGAATCCTCGACAACTTGGGATTAGGTGACCAGGTAGGGGTCAATGA
GTCTGAGCAGATGATTGCTAGATATGACATGAACAATGACTGGAGGATAGATCTGATGGAGTTCACTAAGGTTTTGGAGG
ATAGCTTTTGCTAAACATATTTATTTCTGTATTTGTTTTCCTATATCTGTGAGATGCATTTACATGTTGTGATTGACTGA
ATTCCGCCACTTGATTCCAGAACTAAATAACTGGTCTTTTCTTTTT---------------GAAAAAGGGGTTTGGCGTC
TAGCATTGCCACTAGCCATCTTCTTTTTTTATTGCGAGAGAAATTTTCAATCTATTTATCAATCATGGCAGTACTGAGAA
CACTTGAGCTAGGTGATAAAAATTACAACCAAGTTCATGGACCACCTAGCGACGACTACAATCACTGAAGCGAGCCGAAG
GCGCGCCGCCGTCATCGCCCCTCCCTCATCAGAGTCGGACAAACCTTGTTATAGTAAATAGTAGGGAAGTCGTCGTGTTA
AGGCCCCAATGAAACAGCACACCAGAGCAGCAACCATCATCGATGAAGAGAATTGTAGATCGGAAAGATCAAACCTGTAA
CCAAATGAACGAAGACGAACAAAAACTGGATCCAAATAGATCCATCGAAGATAAGCACCGACCGAATCCCGCAAGATCTG
ACGGAGCCACACCTCCACATA-TCCTCTGACGATGCTATTCGCCACTAGCTATCTTACATGCATGAATGTGGATTGCGAT
GAATCCCAGCCCATCATCACCAAGGATCATGCAAGATCCCCAAAATAACACAGACCA-GTTTGAGAACTGGATGTACCCA
ACCAGTATTCAGGTACAA--------------------------------------------------------------
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>chr1A_1
ACTTTGCTTCTTCAGTCATATCAAGGACTCGTATGGTAACCTAATAACCTCCCAAAAGACAGGTTGTTCAAGTA------
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-------------------------------------------------------------------------ACAATT-
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------------------AATTTCTTGGACAATTA------ATAGCTCAGCGATGAACAAATCTAGACCTTCGCCGTGGA
CAAGAAATCGGAATCATCTTGACAAGCAAGATTTGCACAAGGCAGCAAATTGACTCTGATATAAAAAGTTACAGAAGAAT
ACTTTTACTCGGGTCT-GAGTCTTCTTCAGAAGA---TGTCCCTCAGGTCTCGATCAAGTCTTGTTCTTTTTCCAAGGAA
ATACCGGCTTCTTGCTTTCCCTGAAATTTCTGTGTAAGCACCATGCATATAGCATATTCAACTTGGGGAAAAGGAGTCAA
AAACTGCACACTCGGACTAACCAA-GTATGAACATTTATTTACACATCATGTCCTGTATGTCTCCCAACATAGACACAAC
GAAGTTGCCAACCATACTGTGTGAACTCAACTAAGTAGTACCACATCATGGCGGCACTGAACATGCATCG----------
--------------GACTTTTCCAGGAAACATCCAGTGGAGTAAAAGAAGATTGAAAGAAGCAACAAAAACCACGACCAT
GCACACACTCTTTGAATCTTAGACAACAAGTCATCATCTTGCTGTCTTGTCTACTATTTTTCCATAAGTTTTTTCAAACT
GGAAACATCCTCTCATCTGCCTAGATCTTTCATATTGATTCT---GTTGAAGGATGAAGCTACAAGCCTAGAAAAAACAA
ACAAGAAACAGCAACTTCCCTTCCTATATAAACCTTCACTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAG
GCTCATAGCTCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATGCCATCATGCACCACTTTTCCAAGAGCCAGTTGGTA
TTCTCATCCTTTTCATCCTCACCTGGTGCATCTCAAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCAAT
TGTACTGTCTCCACGACAACCTCGACGCCGGTCCTCGCCGAGAAGAAGACATCGAAGGCACCAAATAAGAGTGAATATGA
TGAGATGAATGCGACGCAGTCAGATGCCGAGGTAGCCATGAGAAAGATGGGACTCGATTTTGATCAAGAGAAGAGCTGTG
AGTATAGTTCTACGCTTTTCGACAACGACGAACCAAGCTTCCAGGAAGTGAAAATGGCATTCTTGGTTTTCGATGAGAAC
AATGATGGGTACATCGATGCATTGGATTTGAGAAGAATCCTCCAGAACTTGGGATTAGGTGATCGGGTAGGGGTCAATGA
GGCTGAGCAGATGATTGCTAGATATGACACGAACAATGACAGGAGGATAGATCTGATGGAGTTCACTAAGGTTTTGGAGG
ATAGCTTTTGCTAGACATACTTATTTCTGTATTTGTTTTCCTATATCTGCGAGATGCATTTACATATTGTGATTGACTGA
ATTGTGCTACTTGACTCCAGAATTAAATAACAGATGTGTTGGTTTTTTTTTTT---------------------------
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>SNPs
-------------------------------------------------------------S------------------
--------------------------------------------S---------------------------S-------
-----S----------S------------------------S--------------------------------S-----
------S----------------S----------S---------------------------------------------
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-----------------------------------------------------------------------------S-S
---------------------------------------------S----------------------------------
----------------------------------SSS-------------------------------------------
--------------------------------------S-----------------------------------------
-------S-----S--------------S----------------------------S---------S---S----S---
--S-SS--------------------------------------S------------------------SSSS-------
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-----------S--------------------S-S--S----SSS-----------------------------------
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--------------------------------------------S-----------------------------------
----------------------------------S---------------------------------------------
------------S------------------------------------S------------------------------
------------------------------------------------------S-----------------------S-
----------------------S--S-----S---------S--------------------------------------
------------------------------------S-------------S--S-----S--------------------
-------------------------------------S---S----S-----S---------------------------
-S--------------SSS--------------------------------------------S----------------
-----------------S---S----------------------------S--SSSSSSSS------S---------S--
----------------S-----SS--------------------------------S-----------------------
S-------S--SSSS-SSS-S-S-SSSSS------------S-------------------S------------S-----
----SS----------------------SS----SS---S---S------S-----S-----S-------S------S--
------------------S-------------------------SS-----S----------S---S-------S-----
---S--------------------S-------S-------------------S----S-S--S-------S-S-S---S-
---S--S------------S-S-----S-----S--------------------S-----------S-------------
-----------------------------------------S---SS-SSSSSSS-SS----------------------
-----S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1193
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-----------------------------------------------------GCACCGAACATGCATCAGAC-------
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>reverse_2347
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--------------------------GGTCCATGGATCACCTAGCG----------------------------------
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