>input_sequence_70592
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-----------------------------------------------------ATGGAGAGGCAGCGGGTGGTGGTGGTG
GTGGAGGAGGCCCCGGCGTCGCGCGCGGCGCTGCAGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCT
GCTGCACGTGTGCGCGCCGGCCCGCTCCAGGCGCCGCCGCCGGCGCCTCCGCCTCCAAGGCTTCCAGCTCGCGCTCGCCT
TCAGGGACCTCTGCGACGGCGGCGTCGCGGAGGCCATGGTGGAGATCGTGGTGCGGGAGGGGGAGCTCGCGCCGACGGTG
GCCGCGGCCGTGGCGCAGCTCCGGGCCTCCACGCTCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGTAAG
CAGAT-AGATAAGATTCAGCTCGTCTGAACTCGCCGCGAGGTGTCATGCTCTGAATTTGCTT----------------CG
GTCAGGTCGCCGAGCCCGTACGAGGGCGCGGGCGGGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCG
GCGCGGGGCCGTGGAGGCGGAGCTCACCCAGGTGGAGACCATACGGCTGCAGTAAGCGCACATCACAACCAATCACTACC
------GCATTTTCTGACACCGAATCCACTT-------CTTGCTCTGACTGTACC-------GATCGAAACCCGCAGCGT
GCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCGCTGCCGCTGGGGGTGATCTGGCGGCGATCGTCGTCGTCGTCGTCAA
AGAAGAGGAGATGA------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G010600
CGTCAGGGTCACACAAAGACGGACCCAGCAGCCGGGGCTATGGACAGCAGCTGCGGTCGCCGCAGGGCGATCGATCACAG
GGGAACTCTCGGCGGCGCCGCCGGAGGACAGGGAAACCCTAGCTTAAGTCGCTAGGGGATGGGTATAAGTCCACTTGTTT
GAGTCTCAAGCGAACGTCTGGGCCCTTTCGTCGAAATGCAAACCCGAATCACTGGAGTTAGCTGATTTCGGTAGGCGCCG
ATCGATCGAAACATTCCTGAAACTGAAATTTAACACCAACCTCACTAGTCCTCAGGCACAGGATAGTGCGGCAACCGCAG
CGCGCGTGCAAACCTCGACTACGGGGTTAGGATCGTCCTCTGCAGTAGCCCACCATGCAGCACGGTCACTGCCTTGTGGA
CCCGGCCCCACATGTCATCCGCACTACAACACCGTACAATACTGCAGAGGACCTCAACCCCAAGTACGTCATGGTATACA
CCGTAGAAAGAAATTGTTGTCTTGGGTACCTCCGCGTATGGCCTCTAAATTTTAGCTTGATCCGGGAATCTTAATTACCA
TTGTTGTTATAGTTTGATCATGAGCATGAAACCAAACCAGCATCTTATCCTGCTGCTAATGGCCAAGGAGCACACACACA
CA------CACGTGATCCATGACAACACAATAAACTAGGCGATTTAGGTAGCAGTTAGGAGTC---TGCAGCATCTTAAT
TATGAATGATAATAATAGT---AGCACAAGCACAACAAGGCAAGCCAATCCAAAGCTTAGCTAAGCCAAGCCAGGGGTCC
CTCCCTCCCTCCCTCCTCCTCCCCCTACCTCTCTCTGGTCCCAACGACCCCTTCTCCCTTCTCGAA-CTCCAGCTGGCCA
CCCAGCTACCACCAAGCTACTGTCGCTCGCTCACCAATCCCCCCGTCTTGCCCGACTACACGCCAGCGCCATGGATGGTT
AGCTAGCTAGCTCTTGCGCTCTTGTGCAATCCCTTCCTCTGGGACTTGTCGTCATGGAGAGGCAGCGGGTGGTGGTGGTG
GTGGAGGAGGCCCCGGCGTCGCGCGCGGCGCTGCAGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCT
GCTGCACGTGTGCGCGCCGGCCCGCTCCAGGCGCCGCCGCCGGCGCCTCCGCCTCCAAGGCTTCCAGCTCGCGCTCGCCT
TCAGGGACCTCTGCGACGGCGGCGTCGCGGAGGCCATGGTGGAGATCGTGGTGCGGGAGGGGGAGCTCGCGCCGACGGTG
GCCGCGGCCGTGGCGCAGCTCCGGGCCTCCACGCTCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGTAAG
CAGAT-AGATAAGATTCAGCTCGTCTGAACTCGCCGCGAGGTGTCATGCTCTGAATTTGCTT----------------CG
GTCAGGTCGCCGAGCCCGTACGAGGGCGCGGGCGGGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCG
GCGCGGGGCCGTGGAGGCGGAGCTCACCCAGGTGGAGACCATACGGCTGCAGTAAGCGCACATCACAACCAATCACTACC
------GCATTTTCTGACACCGAATCCACTT-------CTTGCTCTGACTGTACC-------GATCGAAACCCGCAGCGT
GCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCGCTGCCGCTGGGGGTGATCTGGCGGCGATCGTCGTCGTCGTCGTCAA
AGAAGAGGAGATGAATGAACGCACGCCG----ACATCTCCGGACGGACTTGTGTCTCAACCTGCAAGTTCATCCATCCAA
C--CTCCTCTGCTTGCTAGCCCT-----GTACAGACAGACATCATTTTTTTTTC----TTTTTGCCATAAATCTTTCTTC
TTCTTCTTTCATAGCTCATCGAATCGAGTGATAGACACAGCACATCAATAGAACATGCATCGCCATGATTGATCTTTTCC
AAGTGCCGAAACAGGTACGGTCGAGTAGTATTTATTTCCTCGTGAAAGAACATGCCGTTGCTTCCTCTGGAGTTCGTCCA
TCCACAACAAAAATAAGAGAAAAGAAAAGAAAAGAAACGACGCTCATGTCATGTGTGCACGTACAAGTA-----------
-CAATCCAATCTATGAACCGGCAGAAATTCCATGGAGAGGCGCTCCCTGTTTCACCAGCTGCGCAACACAAAAGAGAAAA
AGGAAAAAAAATGCAGGGATCCATGATGACACTGTCTCTGTTTTCGGCACCGG-AAATGCGTGTCCTGTCTGATGGACAG
GCAGAATCCACATGTTCTTCCAACACCGATTTTATTCGAAGTCAAGGAATATTTTTAGGTTCTTTTCCTAGATGAAACGG
AATACCTATTTATAATTAATTCCTAATTATACAAAAGCATTCCAGATAGACTTAGC------------------------
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-------------------AAAAAAAAAAAGGGTTTCATTTGGATTCCCCTATTTTCAACACGCACTCTAACGTGCCATT
GCTTCCTGGATTTTAT----------------------------------------------------------------
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-----------CAAGAAGGGAAACCCCAGCTTCAGAGGACTTTATTATGCAGAAAACAGAGAAGTGCATATTACACCCCT
CAATTCTAGCATTTGTTTAAGAATACACCCCCAACAACCAGACAGAATACAACCCTCCTCTCCCCGTTGACCGGTTTTGA
AACGTTGACTGGAGTGAACAGTAAATTCGAAAGAAATAAAAAAATCAAAACAAATTCAAAAAACAATTTTCATTATTTCA
TTGGGTGAACAGTAAACTGAAAAGAAATTAAACAAATTAA----------------------------------------
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>chr3B_1
CGTCAGGGTCACACAAAGACGGACCCAGCAGCCGGGGCTATGGACAGCAGCTGCGGTCGCCGCAGGGCGATCGATCACAG
GGGAACTCTCGGCGGCGCCGCCGGAGGACAGGGAAACCCTAGCTTAAGTCGCTAGGGGATGGGTATAAGTCCACTTGTTT
GAGTCTCAAGCGAACGTCTGGGCCCTTTCGTCGAAATGCAAACCCGAATCACTGGAGTTAGCTGATTTCGGTAGGCGCCG
ATCGATCGAAACATTCCTGAAACTGAAATTTAACACCAACCTCACTAGTCCTCAGGCACAGGATAGTGCGGCAACCGCAG
CGCGCGTGCAAACCTCGACTACGGGGCTAGGATCGTCCTCTGCAGTAGCCCACCATGCAGCACGGTCACTGCCTTGTGGA
CCCGGCCCCACATGTCATCCGCACTACAACACCATACAATACTGCAGAGGATCTCAACCCCAAGTACGTCATGGTATACA
CCGTAGAAAGAAATTGTTGTCTTGGGTACCTCCGCGTATGGCCTCTAAATTTTAGCTTGATCCGGGAATCTTAATTACCA
TAGTTGTTATAGTTTGATCATGAGCATGAAACCAAACCAGCATCTTATCCTGCTGCTAATGGCCAAGGAGCACACACACA
CACACACACACGTGATCCATGACAACACAATAAACTAGGCGATTTAGGTAGCAGTTAGGAGTC---TGCAGCATCTTAAT
TATGAATGATAATAATAGT---AGCACAAGCACAACAAGGCAAGCCAATCCAAAGCTTAGCTAAGCCAAGCCAGGGGTCC
CTCCCTCCTCCTCCCCCCCCT-CCCTACCTCTCTCTGGTCCCGACGACCCCTTCTCCCTTCTCGAA-CTCCAGCTGGCCA
CCCAGCTACCACCAAGCTACTGTCGCTCGCTCACCAATCCTCCCGTCTTGCCCGACTACACGCCAGCGCCATGGATGGTT
AGCTAGCTAGCTCTTGCGCTCTTGTGCAATCCCTTCCTCTGGGACTTGTCGTCATGGAGAGGCAGCGGGTGGTGGTGGTG
GTGGAGGACGCCCCGGCGTCGCGCGCGGCGCTGCAGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCT
GCTGCACGTGTGCGCGCCGGCCCGCTCCAGGCGCCGCCGCCGGTGCCTCCGCCTCCAAGGCTTCCAGCTCGCGCTCGCCT
TCAGGGACCTCTGCGACGGCGGCGTCGCGGAGGCCATGGTGGAGATCGTGGTGCGGGAGGGGGAACTCGCGCCGACGGTG
GCCGCGGCCGTGGCGCAGCTCCGGGCCTCCACGCTCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGTAAG
CAGAT-AGATAAGATTCAGCTCGTCTGAACTCGCCGCGAGGTGTCATGCTCTGAATTTGCTT----------------CG
GTCAGGTCGCCGAGCCCGTACGAGGGCGCGGGCGGGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCG
GCGCGGGGCCGTGGAGGCGGAGCTCACCCAGGTGGAGACCATACGGCTGCAGTAAGCGCACATCACAACCAATCACTACC
------GTATTTTCTGACACCGAATCCACTT-------CTTGCTCTGACTGTACC-------GATCGAAACCCGCAGCGT
GCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCGCTGCCGCTGGGGGTGATCTGGCGGCGATCGTCGTCGTCGTCGTCAA
AGAAGAGGAGGTGAATGAACGCACGCCG----ACATCTCCGGACGGACTTGTGTCTCAACCTGCAAGTTCATCCATCCAA
C--CTCCTCTGCTTGCTAGCCCT-----GTACAGACAGACATCATTTTTTTTTC----TTTTTGCCATAAATCTTTCTTC
TTCTTCTTTCATAGCTCATCAAATCGAGAGATAGACACAGCACATCAATAGAACATGCATCGCC----------------
----------------------GAGTAGTATTTATTTCCTCGTGAAAGAACATGCCGTTGCTTCCTCTGGAGTTCGTCCA
TCCACAACAAAAAAA--AAGAGAGAAAAGAAAAGAAACGACGCTCATGTCATGTGTGCACGTACAAGTA-----------
-CAATCCAATCTATGAACCGGCAGAAATTCCATGGAGAGGCGCTCCCCGTTTCACCAGCTGCGCAACACAAAG-------
AGGAAAAAAAATGCAGGGATTCGTCATGGTACCGTCTCTGTTT-CGACAGCCGAAATGT-GTGCCTTGTTTGATGGGCAG
ACAGAATCGACATGTTCTTCCTTCTGTCAACACCGACTGTAGATGTACTTTCAAGTTGTACCATGCGCAAGCGGGAGTTA
TGTGTACCGGGCTCTCCTTTTTTTTTTGGAATCTTCAGTGGAGCATATAGCTTGGCATATCAAAAATTATAGAGTACTAA
TTAGCACATATTCTTCCCTCTTTATCTTTTCTCTCTTCTCTCTTATGTTTTCTTTCTCTCTCATCTCTCTTTTCTCTCTT
CTATCTTACCCCCTTTGTAAAAAAAACATTAGGTCAAATTTGGACCTAAAAACTTCAGAATGATGATTATCTGAAATAGC
TCATCCAAATGATTTTTTTGGCAAAAATAGAATCCATGGTTTTCTGTAAAAAATCTGACAAATCTCCATTCCAAATTACT
CGTCGCAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACCTGCGACAAGTAATTCGAAACAGAGGG
AGTACATGTTACAAGAAGGGGCCATGCAAAAACCTCCTATTTTGGTAACCTGTGGGGGATGTTGAGCCATTGGCTAGGCG
CCGGGG--------------------------------------------------------------------------
--------------------------------------AAAAAATAAATAGAACTTCCAAATATCGAAATGCGATGAATT
TTCTTGTACAACTTGTTTGGAGATGGTGTTGAGCAAAAAAGAAGGACATGGTCGAAAGTGCTCTGTGAATTTCGCAGCAA
CCCGCCGCCCAAGATCCCGTTCCCGATCTTGGCGCCGCCGCTGGGCGTGATCCGGAGGGGATCGCCGTCAAATAAGAGGA
AATGAATGGATGCCAACATATCTGGACTTGCATCCGGACTTTCAAGTTCATCTGTCCACCAACTCCTCTGCTTGCAAAGC
CTTGTACATACAGACA
>chr3D_662
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---------------------------CAATAAACTCGACGATTTAGGTAGCAGTTAGGAGGAGCTTGTAGCATCTTAAT
TATGAATGATAATAGTAGCACAAGCACAAGCACAACAAGGCAAGCTT----------------AGCTAAGCTAGGGGTCC
CTCCCTCCCCCTACCC------------------CTGGTCCCAACGACCCCTTCTCCATTCTTGAAACTCTAGCTGGCTT
CCTAGCTACCACCAAGCTACTGTCGCT----CACCAATCCTTCCTTCTTCCCCGATTACATGCCAGCGTCATGGATGGTT
AACTTAGAC-----TGTGCTCTTGTGTAATCTTTGGGACTTC---------TCATGGAGAGGCAGCGGGTGGTGGTGGTG
GTGGAGGACGCCCCGGCGTCCCGCGCGGCGCTGCAGTGGGCGGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCT
GCTGCACGTGTGCGCGCCGGCCCGCTCCAAGCGCCGCCGCCGGCGCCTCCGGCTGCGCGGGTTCCAGCTCGCGCTCGCCT
TCCGGGACCTCTGCGACGGCG---TCGCGGAGGCCATGGTGGAGATCGTGGTGCGGGAGGGGGAGCTCGCGGCGACGGTG
GCCGCGGCGGTCGGCCAGCTCCGGGCCTCCACGCTCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTAAGTGGT
-AGAT-AGAT-AGATTCAGCTA-TCTGAACTCGCGGCGAGGTGCCAGCCTCTGAATTTGTGTGTGT-------------G
GTCAGGTCGCCGAGCCCGTACGAGGGAGTGAGCGGGCTGGGGTGCCGGGTGCTCGCCGTCCGGCAGCACGCGACGGCGCG
GCACGGGGCCGTGGAGGCGGAGCTCACCCAGGTGGAGACCATACGGCTGCAGTAAGCACACATCACAACCAAGCACTACT
GTATCTGTATTTTCTGACATCAATTGAGGTTCACTCTTCTTGCTCTGACG---------ACTGATCGAAACTCGCAGCGT
GCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCGCTGCCGCTGGGCGTCATCTGGAGGCGAT------CATCGTCGTCGA
AGAAGAGGAAGTGAATTAACGGATGGATGCCAACATCTCCGGACGAACTTGTATCTGAACCTGCAAGTTCATCCCTCCAA
CCGCTCCTCTGCTTGCTAGCCCTCCCTTGTACAGACAGACATCTTTTTTTTCTTTTCTTTTTTGCCATAAATCTTTCTTC
TTCTTTCATAGCTG---ATCGAATCGACTGATAGACACAACACATCAATAGAACATG----GCCATGATTGATCTTTTTT
AAGTGCCGAAATAGGTGCGGTCGGGTAATTTTTATTTCATCGTGAAAGAGCATGCCGTTGCTTCCTCTGGACTGAGAAAG
AG--------AAAGA--AGAAAAGAAAAGAAACGAAAGGATGCTCATGTGTGCATGGACGAACGCACATACAAATACAAT
CCAATCCAATCTATGAGAAGGCAAAAATTCCATGGAA-------------TTCACCAGCTCTGCAGCAAAAAAGAG----
------AAAAATGCATGGACCCATGACGGCACTGTCTCTGTTTTCGACACCCGAAAATGCGTGTCGTGTCTGATGGACAA
ACAGAATCGAGATGTTCTTCC-----------------------------------------------------------
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>chr3A_1000
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----------------------------------------------------CATGGAGAGGCAGCGGGTGGTGGTGGTG
GTGGAGGACGCCCCGGCGTCGCGCGCGGCGCTGCAGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCT
GCTCCACGTGTGCGCGCCGGCCCGCTCCAAGCGCCGGCGCCGGCGCCTCCGCCTGCGGGGCTTCCAGCTCGCGCTCGCCT
TCAGGGACCTCTGCGACGGCG---TCGCGGAGGCCATGGTGGAGATCGTGGT----------------------------
---GCGGCGGTCGGCCAGCTCCGGGCGTCCACGCTCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGGGTA
AGCAGCAGAT-AGATTCAGTTCGTCGTCTCAACTCTGAAG---------TCTGAATTTGCGTGTGTTCTCGTGACTGACG
GTCAGGTCGCCGGGCCCGTACGAGGGAGTGAGCGGGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCG
GCACGGGGCCGTGGAGGCGGAGCTCACCCAGGTGGAGACCATACGACTGCAGTAAGCGCAC--CAGAGCCAAATACCACT
GCATTTTC-TTTTCTGACACCAATTGAGGTT-------CTTGCTCTGACTGTAGACTGTACTGATCGAAACTCGCAGCGT
GCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCGCTGCCGCTGGGCGTCATCTGGAGGCGAT------CGTCGTCGTCAA
AGAAGAGGAGATGACTTAACGGATGGATGGCAACATCTCCGGGCGAG-TTGTATCTGAACCTGCAAGT------------
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>SNPs
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--------------------------S-----------------------------------------------------
---------------------------------S-----------------S----------------------------
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-S------------------------------------------------------------------------------
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---------S-S-S--S--SSS----------------------------------------------------------
----------------------------------------S---------------------------------------
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--------S-----------------------------------------------------------------------
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------------------------------------------------------------------------------SS
-----------S----S---------------------------------------------------------------
-------------S-SS---------------------------------------------------------------
-----------------------------------------------S----------------------------SSSS
----------------------------S-----------------S----S-------------S--------------
S-------S------------SS-SSSS-SSSSSSS-SSSSSSSSSSSS-SSSSS-S-SSS-S-SSS-S--SS-S-SSSS
SS-SSSSSSSSS-SSSSSS--SS-SS-SSS-SSSSSSSSSSSSSSSSSSS---S--------------------------
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--------------------------S-SSS---SSS-------SSSSSSS-S--SSS-SSSSSSS-SSSSS-SSSS-SS
S-S---SSSSSS--S-----------------------------------------------------------------
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--------------------SSSSSS--SSSS-SSSSS-S---SS--SS-S-SSSSSSSS-SS-S--SSS-SS-SSSS-S
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S-S--S---S---S-SSSSSS-SSSSSSSSSS
--SSSSS-SS-S-SSSS--S-S-SSSSS-SS-SS--SS------------------------------------------
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>forward_434
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--------------TCATCCGCACTACAACACCG----------------------------------------------
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>reverse_2000
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-------------------------------------------------------------------------------C
AAGTGCCGAAACAGGTACG-------------------------------------------------------------
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