>input_sequence_70550
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
TGGACAGCGTGTTCGGCGTGGTGGGCGGCGGATTCGCGGTGGTGGCCGCCGGCACCTCCGCCGCGGGAAGAAGCGTCGTA
TTCATCAACCCCGACAACGACAGGGTCACGAGCCTCGGCTCCAAACTGCTTCTCGGCGTGTCCGGCGTCCCCGGAGACTG
GTACGTAATTCACCACGATCGAGATCAATCAATTCTCGCGCTCCTTCGCTTGAGTCTTCGATCAGCCTTTGTGATCCTCG
CCTGAGTCCTCCATGCTTTTGTGTTTCGCAGCCTGCGGTTAAGGGACGAGGTGAGGGCCAGCGCGAGCAAGATCCACAGC
GCCGCCGCGGCTGCTGACGTCGCCCGGGGGGCGGTGATTGGCTGCGCTCAGTCCGCGAACGCGGTGATCGCCGGCTACGA
CAAGGTCGAGGGCCCGACGATGTACGCCGTTGGCGGCACCGCGCCGCCGGAGCGGGTGGAGCAGTACCGCACCGCTGGGT
GCGGGGCTGGCCTCTGCACGACGGTGATGGAGAACCACTACCGCCCCGGCATGACGGTGAAGGAGGCCGTGGCGCTCGTC
GACAGGTGCATCAAGGAGGTCCGGCGGCTCGGGCTGGCTAGCTTCGTGATCATGGTCGTGGACAAGGATGGGGCCAGGGA
GTACACCAGGCGTATACTAAGGCCGAAGGCGGTGATAGAAATAAAATCCAGTCAGGGAACGCCTATTGTAAACTCGAATA
ATTAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr5B_1_TraesCS5B01G434300
GCAAGTTTCATACTTCAAAGGATGGCAACTTTACTTTTCGGGTTTGTATTTTTTTGGATGGTAGCTTTAGTTGTAAAAAA
GCCAGGGCCCGAGTGCTTCATACCACACGTGTGACATTTATCATTTGAGTAATTTTTTAGTGTTTATATACTACTACCTC
CGTTCCTAAATATAAGTCTGTTTAGAGATTTCAATATGGATTATATACGGAGCAAAATGAGTGAATCTACACTCTAATA-
-----TATATATATCCATATATAGTTCGTATTGGAATTGCTAACATAATTAATTGTGTATAGAAACGGAGGGAGTAGTAT
AATTTATAGTAGGCTGTCACCCTTTTACCCGGCCTATACGCCAGCCCTATTTTCACAAGTAAAGTGGACAAACTTCCTAT
GGCTTAGAC-T--TTTTTTTTGAGAGTTGCATAGGAAAAGGTGGACAATATAT------TAGGTTCTTTTGCAAGATAAG
ACATTATGTAGGTGGCAGACCAATTTTAAGTAATTGCTCCCTTTTCCATATCCTCTTTGACATGTTTTTTTGGGAAATTT
TTGTTTTTGCCACTCTAAATTTTGCCAATTTTACTTATATCACACTAAAATTTGACATTTCACTTTTGCCACTCTTGCTT
TAGACAGTGTATCACAATTGTCATTAACATGACGAGCCAACCACTTATATCATAGGAGAAAAACATTTTGCTAACCAAAT
ATGGACATGGCCGAGCTAACCACTTATATAGCAATTTGAAGGCAGCGTATCGGTGCGTGTTAATTAT-------------
----------CATCCGGTTTTTAG-AAAACCTTTTCCTTTCCGAATTCCGGTCTAGTTTGCGGCTCCGACCCCAACTCGT
CGTCGGCCTCGATCCGATCTACTTATAGTAGATCCCCCTAGTCCTCTCTCGTAACCTAGGAACACCGTGCGAGCACAGCT
GTAGCTACGTGATACGCACGGAGAAGTACCGACCGAACGTGCTGCACAACAGCAAGTCAGCAACACGAGGGAGACGATCA
TGGACAGCGTGTTCGGCGTGGTGGGCGGCGGATTCGCGGTGGTGGCCGCCGGCACCTCCGCCGCGGGAAGAAGCGTCGTA
TTCATCAACCCCGACAACGACAGGGTCACGAGCCTCGGCTCCAAACTGCTTCTCGGCGTGTCCGGCGTCCCCGGAGACTG
GTACGTAATTCACCACGATCGAGATCAATCAATTCTCGCGCTCCTTCGCTTGAGTCTTCGATCAGCCTTTGTGATCCTCG
CCTGAGTCCTCCATGCTTTTGTGTTTCGCAGCCTGCGGTTAAGGGACGAGGTGAGGGCCAGCGCGAGCAAGATCCACAGC
GCCGCCGCGGCTGCTGACGTCGCCCGGGGGGCGGTGATTGGCTGCGCTCAGTCCGCGAACGCGGTGATCGCCGGCTACGA
CAAGGTCGAGGGCCCGACGATGTACGCCGTTGGCGGCACCGCGCCGCCGGAGCGGGTGGAGCAGTACCGCACCGCTGGGT
GCGGGGCTGGCCTCTGCACGACGGTGATGGAGAACCACTACCGCCCCGGCATGACGGTGAAGGAGGCCGTGGCGCTCGTC
GACAGGTGCATCAAGGAGGTCCGGCGGCTCGGGCTGGCTAGCTTCGTGATCATGGTCGTGGACAAGGATGGGGCCAGGGA
GTACACCAGGCGTATACTAAGGCCGAAGGCGGTGATAGAAATAAAATCCAGTCAGGGAACGCCTATTGTAAACTCGAATA
ATTAAAGTAGTAGTATAT--TTTTGTGCAAAATTTATATATAAACTTGTTTGTAATTTGAA---------GGGGTTCATA
TACATGTTCTTTCTCCTACTCTTACCGGC------------GTTTATCAAACCGTGTCTGGAGGCATTGTCTTGGCTTGA
CCGACCCCTTGGGCACCAA------CACTAGCTCCGGTTTGTCGGACCTGTCGGTGACGGCGGTGCGGCGTGGCGTGGTC
TTCAAATTGGTTGCCTCCGGGGTGCATGGGCCGCCTTTGGGGCTCTAGCTATGTACTCTCTCCGTTCAGAAATACTAATC
GAAAAAATGATAAAATGGATGTATTTAGTGCTAACATATGTCTACATACTTCCATTTCTTCGATAAGTATTTCCAGACGG
AGGGAGTACATCATTGTCGATACTTCTTGGCCGACAACATCCTCAAGTCTTGTTGTGTCTTGTTGTCCAGA---------
-------------------------------------TCGCGTGTCCGAGGTGTTTGGCATCGACTGAGGCGCGACCTTG
GGCTCTATGTCCTGCCTCATTGCCATTCGTATGTTTGTCTGGCCCAGCCGTGGAGTAGTCACGTGGAGGAGTCACGGTTG
CAGCAAACCACCGGTTAATCTGTGCTTGGATGGCTAAAGAGACAGTGGTATCCCCATTTCATCAGGGTTTAAGTTTTGGT
GCTCGCATTATTCCTGAATTTTAGAATTTCCGGTGATGCGCTTTCAATGGGAGGAGACGTTTTCGTCGAGACGAGATGCC
TCCGGTGACTTCGTAAATCTCAAGATGATATGCCAGCTCATTCTCTCGAAGGTGCTCATAGGGGTAGGGTGTGTGTGTGG
GCATCATAGGTGAGTGTATGAGATGGTAGAAAGAGAAGTTAGGATTTTTTTGCCTTTTCTTAATTAAAAGATGATCTCTT
ACCATAATATGCCTCATTACACTCTGCCGGCCACCGCACGCCACCCCCCGGGGTCGCCGGGCCGCCGCGCAGCCGAGCAG
CACCACCGCCATCTCCTACCCCGAGAAGGGGACGAGCGCG
>chr5A_2
-CAACTTTCATACTTCAAAGGATGGCAACTTTATTTTTTGGGTTTGTATTATTTTGGATGGTAGCTTTAGTTGTAAAAAA
GCCAGGGCCCGAGTGCTTCATACCACACGTGTGACACTTATCATTTGAGTAATTTTTTAGTGTTTATATACTACTTCATC
TGTTCCTAAATATAAGTCTGTTTAGAGATTCCAATATGGATTATATACGGAGCAAAATGAGTGAATCTACACTCTAAAAT
ATGTCTATATATATTCATATGTAGTTTGTATTGAAATTGCTAACA----TAATTGTGTATAGAAACCGAGGGAGTAGTAT
AATGTATAGTAGGCTGTCGCCCTTTTACCCGGCCTATACGCCAGCCCTATTTTCACAAGTAAAGCGGGTAAACTTCCTAT
GGCTTAGACTT--TTTTTTTTGAGAGTTGCATAGGAAAGGATGGACAATATTT------TAGGTTCTTTTGCAAGATAAG
ACATTATGTAGGTGGCAGAACAATTTTAAGTAATTGCTCCCTTTTCTATATCCTCTTTGAACATGTTTTTGGGGAAATTT
TTGTTTTTGCTACTCTAAATTTTGC---------TTATGTCACATTAAAATTTGACATTTCACTTTTGCCACTCTTACTT
TTGACAATGTATCACAATTGTCATTAACATGACGAGCCAACCACTTATATCATAGGAGAAAAACATTTTGCTAACCAAAT
A---ACATGGCCGAGCTAACCACTTATATGGCAATTTTAAAAACCGGATGATAACACGCACCGATACGCTGCCTTCATGG
ATAACACCTGCATCCGGTTTTTAAAAAAACCTTTTCCTTTCCAAATTCCGGTCTAGTTTGCGGCTCTGACCCCAACTCGT
CGTCGGCTTCGATCCGATCTACTTATAGTAGATCCCCCTAGTCCTCCCTCGTAACCTAGGAACACCGTGCGAGCACAGCT
GTAGCTACGTGATACGCACGGGGAAGTACCGACCGAACGTGCTGCACAA--------CAGCAACACGAGGGAGACGATCA
TGGACAGCGTGTTCGGCATGGTGGGCGGCGGCTTCGCGGTGGTGGCCGCCGGCACCTCCGCCGCGGGAAGAAGCGTCGTG
TTGATCAACCCCGACAACGACAGGGTCACGAGCCTCGGCTCCAACCTGCTTCTCGGCGTGTCCGGCGTCCCCGGAGACTG
GTACGTAATTCACCACGATCGACATCAATCAATTCTCGCGCTCCTTCGCTTGAGTCTTCCATCAGTCTTTGCGATCCTCG
CCTGAGTCCTCCATGCTTTTGTGCTTCGCAGCCTGCGGTTAAGGGATGAGGTGAGGGCCAGCGCGAGCAAGATCCACAGC
GCCGCCGCGGCTGCTGACGCCGCCCGGGAGGCGGTGATCGGCTGCGCTCAGTCCGCGAACGCGGTGATCGCCGGCTACGA
CAAGGTCGAGGGCCCGACGATGTACGCCGTTGGCGGCACTGCGCCGCCGGAGCGGGTGGAGCAGTACCGCGCCGCTGGGT
GCGGGGCGGGCCTCTGCACGACGGTGATGGAGAACCACTACCGCCCCGGCATGACGGTGAAGGAGGCGGTGGCGCTCGTC
GACAGGTGCATCAAGGAGGTCCGGCGGGTCGGGCTGGCTAGCTTCGTGATCATGGTCGTGGACAAGGATGGGGCCAGGGA
GTACGCCAGGCGTATACTAAGGCCGAAGGCGGTGATAGAAATAAAATCCAGTCAGGGAACGCCTATTGTAAACTCGAATA
ATTAAAGTAGTAGTATAC--TTTTTT-CAAAATTTATATACAAACTTGTTTGTAATTTGAAAATTTAAGTGGGTCTCATA
TACATGTTCTTTCTCCTACTCTTACCGGCTATCTCCGCCAGGTTTATCAAACCCTCTCTGGAGGCATTGTTTTGGCTTGA
CCGCCCCCTTGGGCACCAA------CACTAGCTCCGGTTTGTCGGCCCCGCCGGTGACGGCGGTGCGGCGTGGCGTGGTC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr5D_2
-CAACTTTCATACTTCAAAGGATGGCAACTTTATTTTTCGGGTTTGTAATTTTTTGAATGGTAGCTTTAATTGTAAAAAA
GCCAGAGCCCGAGTGCTTCACACCACACGTGTGACACTTATCATTTGAGTAATTTTTTAGTGTTTATATACTACTTCCTC
TGTTCCTAAATATAAGTTTGTTTAGAGATTCCAACATGGATTATATACGGAGCAAAATGAGTGAATCTACACTCTAAAAT
ATGTCTATATATATCCTTATGTAGTTCGTATTGAAATTGCTAACA----TAATTGTGTATAGAAACGGAGGGAGTAGTAT
AATGTATAGTAGGCTGTCGCCCTTTTACCCGGCCTATACGCCAGCCCTATTTTCACAAGTAAAGTGGGCAAACTTCCTAT
GGCTTAGACTTAATTTTTTTTGAGAGTTGCATAGGAAAGGGTGGACAATATATTAGGAGTAGGTTCTTTTGCAAGATAAG
ACATTATGTAGGTGGCAGAACAATTTTAAGTAATTGCTCCCTTTTCCATATCCTCTTTGAACATGTTTTTTGGGAAATTT
TTGTTTTTGCCACTATAATTTTTGCCAATTTTGCTTATGTCACACTAAAATTTGACATTTCACTTTTGCCACTCTTGCTT
TTGACAATGTATCACAATTGTCATTAACATGACGAGCCAACCACTTATATCATAGGAGAAAAACATTTTGCTAACCAAAT
ATGGACATGGCCGAGCTAACCACTTAT-----------------------CGGTGCGTGTTA----T-------------
----------CATCCGGTTTTTAA-AAAACCTTTTCCTTTCCGAATTCCGGTCTAGTTTGCGGCTCCGACCCCAACTCGT
CGTCGGCCTCGATCCGATCTACTTATAGTAGATCCCCCTAGTCCTCTCTCGTAACCTAGGAACACCGTGCGAGCACAGCT
GTAGCTACGTGATACGCACGGAGAAGTACCGACCGAACGTGCTGCACAA--------CAGCAACACGAGGGAGACGATCA
TGGACAGCGTGTTCGGCGTGGTGGGCGGCGGCTTCGCGGTGGTGGCCGCCGGCACCTCCGCCGCGGGAAGAAGCGTCGTG
TTCATCAACCCCGACAACGACAGGGTCACGAGCCTCGGCTCCAAACTGCTTCTCGGCGTGTCCGGCGTCCCCGGAGACTG
GTACGTAATCCACCACGATCGAGATTAATCAATTCTCACGCTCCTTCGCCTGAGTCTTCGATCAGTCTTTGTGATCCTCG
CCTGAGTCCTCCATGCTTTTGTGTTTCGTAGCCTGCGGTTAAGGGATGAGGTGAGGGCCAGCACGAGCAAGATCCACAGC
GCCGCCGCGGCTGCTGACGTCGCCCGGGGGGCGGTGATCGGCTGCGCTCAGTCCGCGAACGCGGTGATCGCCGGCTACGA
CAAGGCCGAGGGCCCGACGATGTACGCCGTAGGCGGCACTGCGCCGCCGGAGCGGGTGGAGCAGTACCGCACCGCTGGGT
GCGGGGCGGGCCTCTGCACGGCGGTGATGGAGAACCACTACCGCCCCGGCATGACGGTGAAGGAGGCTGTGGCGCTCGTA
GACAGGTGCATCAAGGAGGTCCGGCGGCTCGGGCTGGCTAGCTTCGTGATCATGGTCGTGGACAAGGATGGGGCCAGGGA
GTACACCAGGCGTATACTAAGGCCGAAGGCGGTGATAGAAATAAAATCCAGTCAGGGAACGCCTATTGTAAGCACGAATA
ATTAAAGTAGTGGTAGTATATTTTGCGTAAAATTTATATACAAACTTGTTTGTAATTTGGAAATTTAAGTGGGGTTCATA
TACATGTTCTTTCTC--ACTCTTACCGGCTATCTCCGCCACGTTTATCAAACCCGCTCTGGAGGCATTGTTTTGGCTTGA
CCGCCCCCTTGGGCACCAAAGGAATCACTAGCTCCGGTTCGTCGGACCCGCCGGTGCCCGTGCGGTCTATAGCGGTGGAA
ATTGTCTGTTGGC-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CGATACCTCTTGGCCGACATCATCCTCAAGTCTGGTTGTCCACCTGCCAATCTCCTAGGCGCA
ACGGTGGAGGGCCAGCGAGTCTAGTCTATAGTTTTGGTCGCGTGTTCGAGGTGTTTGGCATCGATTGAGGCGCGACCTTG
GGCTCTATGTCCTGCCTCATTGCCATTCGTATGTTTGTCTGGCCCAGCCGTGGAGGAGTCACG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>SNPs
S---S----------------------------S----------------------------------------------
------------------------------------S--------------------------------------S----
S-----------------------------S----------------------------------------------S--
--------------------S------------S-----------SSSS-------------------------------
---S--------------S------------------------------------------------S------------
--------------------------------------S-----------------------------------------
-------------------S----------------------------------------SSSSS---------------
--------------------------------S-----S-----------------------------------------
-S----S-------------------------------------------------------------------------
-----------------------------S-------S--SSSSSS-SSS------------SS----------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------SSSSSSSS-----------------------
-------------------------------S-----------------------------------------------S
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------S---------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------S----------------------------------------
-------S-----------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S----------------------S---------------------------------------
-----------------------------------------------------S-S--------------S---------
---S--------------------------------------------S-S-----------------------------
--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS------S------------S-------------S-----SSSSSSSSSSSSSSS---------
---------------------------------------------S------------------S---------------
-------------------------------------------------------S-------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_783
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGCGTATCGGTGCGTGTTAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2516
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATGCGCTTTCAATGGGAGGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
