>input_sequence_70538
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-------------------ATGGAGAGGCAGCGGGTGGTGGTGGTGGTGGAGGACGCCCCGGCGTCCCGCGCGGCGCTGC
AGTGGGCGGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCTGCTGCACGTGTGCGCGCCGGCCCGCTCCAAGCGC
CGCCGCCGGCGCCTCCGGCTGCGCGGGTTCCAGCTCGCGCTCGCCTTCCGGGACCTCTGCGACGGCG---TCGCGGAGGC
CATGGTGGAGATCGTGGTGCGGGAGGGGGAGCTCGCGGCGACGGTGGCCGCGGCGGTCGGCCAGCTCCGGGCCTCCACGC
TCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTAAGTGGT-AGAT-AGAT-AGATTCAGCTA-TCTGAACTCGC
GGCGAGGTGCCAGCCTCTGAATTTGTGTGTGT-------------GGTCAGGTCGCCGAGCCCGTACGAGGGAGTGAGCG
GGCTGGGGTGCCGGGTGCTCGCCGTCCGGCAGCACGCGACGGCGCGGCACGGGGCCGTGGAGGCGGAGCTCACCCAGGTG
GAGACCATACGGCTGCAGTAAGCACACATCACAACCAAGCACTACTGTATCTGTATTTTCTGACATCAATTGAGGTTCAC
TCTTCTTGCTCTGACG---------ACTGATCGAAACTCGCAGCGTGCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCG
CTGCCGCTGGGCGTCATCTGGAGGCGAT------CATCGTCGTCGAAGAAGAGGAAGTGA--------------------
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---------------------------------------------------
>chr3D_1_TraesCS3D01G004400
ATGGCAGTTAAAGGTCACAATCACGCAAGTAATTAAATCGCAACATCATGATAACTTAGTGTTGGCATCATATCGTGGCG
GATCATGATAAAGTAGCCTATATAACCACCTGCTTCTATTCAAGTGCCTGCTTGTACGCTTTTGTGGCCAAATTTCACCG
GAATGTTTACCTTTCGGTCATACTACCTCTGTCGTGAAATGTAAGACCTTTATTGACACTTTCATAGATAGTGTTAAAAA
ACCGTCTTCAGTTTTGAGACTGAGCGACTGGTATTTTAGTCATTTCAGTTGCATGCAAGATTCGTTTTTTTTAAGGCATG
TTCACACTTGTTTGATTTCAAGCGACACTTCCGTGGAAACGCAAACCGACATCACCGGAATTCAGTAATTTCAGTAGGGG
CTGAAACATCCCTACTGTAACTGAAATTTGAAACCAGCCCGTGACACAACATAGTCCAGCAACCTCGTGCAAACCTCGCC
TACGTCATATGCTTAACACCGCATCTGCCTCCACAGGAAGAAATTGTCGTTTTGGATGGCTCCAGCTCTCTGAATTTTAA
CCCCACCCCGGAATCTACCATTGCTACTAGAATTTTTTCATTATGAAACCAAACCAACATCTTATCTTACTGCTAACGTC
CAAGGAGCGCGCGCGCGCACACACACACACGTGATCCATGACAACACGAGAGAGAGACCATTCATTCAATAAACTCGACG
ATTTAGGTAGCAGTTAGGAGGAGCTTGTAGCATCTTAATTATGAATGATAATAGTAGCACAAGCACAAGCACAACAAGG-
---------------CAAGCTTAGCTAAGCTAGGGGTCCCTCCCTCCCCCTAC---CC-----------------CTGGT
CCCAACGACCCCTTCTCCATTCT-----TGAAACTCTAGCTGGCTTCCTAGCTACCACCAAGCTACTGTCGCT----CAC
CAATCCTTCCTTCTTCCCCGATTACATGCCAGCGTCATGGATGGTTAACTTAGAC-----TGTGCTCTTGTGTAATCTTT
GGGACTTC---------TCATGGAGAGGCAGCGGGTGGTGGTGGTGGTGGAGGACGCCCCGGCGTCCCGCGCGGCGCTGC
AGTGGGCGGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCTGCTGCACGTGTGCGCGCCGGCCCGCTCCAAGCGC
CGCCGCCGGCGCCTCCGGCTGCGCGGGTTCCAGCTCGCGCTCGCCTTCCGGGACCTCTGCGACGGCG---TCGCGGAGGC
CATGGTGGAGATCGTGGTGCGGGAGGGGGAGCTCGCGGCGACGGTGGCCGCGGCGGTCGGCCAGCTCCGGGCCTCCACGC
TCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTAAGTGGT-AGAT-AGAT-AGATTCAGCTA-TCTGAACTCGC
GGCGAGGTGCCAGCCTCTGAATTTGTGTGTGT-------------GGTCAGGTCGCCGAGCCCGTACGAGGGAGTGAGCG
GGCTGGGGTGCCGGGTGCTCGCCGTCCGGCAGCACGCGACGGCGCGGCACGGGGCCGTGGAGGCGGAGCTCACCCAGGTG
GAGACCATACGGCTGCAGTAAGCACACATCACAACCAAGCACTACTGTATCTGTATTTTCTGACATCAATTGAGGTTCAC
TCTTCTTGCTCTGACG---------ACTGATCGAAACTCGCAGCGTGCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCG
CTGCCGCTGGGCGTCATCTGGAGGCGAT------CATCGTCGTCGAAGAAGAGGAAGTGAATTAACGGATGGATGCCAAC
ATCTCCGGACGAACTTGTATCTGAACCTGCAAGTTCATCCCTCCAACCGCTCCTCTGCTTGCTAGCCCTCCCTTGTACAG
ACAGACATCT----------TTTTTTTCTTTTCTTTTTTGCCATAAATCTTTCTTCTTCTTTCATAGCTG---ATCGAAT
CGACTGATAGACACAACACATCAATAGAACATG----GCCATGATTGATCTTTTTTAAGTGCCGAAATAGGTGCGGTCGG
GTAATTTTTATTTCATCGTGAAAGAGCATGCCGTTGCTTCCTCTGGACTGAGAAAGAG--------AAAGA--AGAAAAG
AAAAGAAACGAAAGGATGCTCATGTGTGCATGGACGAACGCACATACAAATACAATCCAATCCAATCTATGAGAAGGCAA
AAATTCCATGGAA-------------TTCACCAGCTCTGCAGCAAAAAAGAG----------AAAAATGCATGGACCCAT
GACGGCACTGTCTCTGTTTTCGACACCCGAAAATGCGTGTCGTGTCTGATGGACAAACAGAATCGAGATGTTCTTCCTTC
GAGCAACA--------CCGAGCAACACACACTCTAACGTGCCATTGTTTCCT----------GGACTTTTGAGTGTTCTT
TTTT-----TTTTTGACGGACAACTTTTGAGGGTTTCTTCAGTCGTAAAACCCCACAGCTTTGTATGCCGACGGCCGTCA
TCATGTGATGTTCAAAACGGAGCGGCCAGGCCCACTTGCCAATACTTACTTCCAACTTATACCCCGCGCAAGCGGGAGCT
ACATGTATCGGGCCGTCCTTTTTCC----GAATCTTCAGTGGGGC-ATGTAGCTTGGCATATCAAAAACTATGGAGTACT
AATT--------------------------TTCTCTTTTCTCTCTTATGTTTTCTTTCGCACCCATCTCTCTTTTCTCTC
TTCGATCTTACCCCCTCTGTAAAATAAA----TAGGTCAAATTTGGACCTAAAAACTTCAGAA---TGATGATTATCTCA
AATTGCTCATCCAAATGATTTTTTTTGTGCAAAAATAGAATTCATCGCTTT-----------------------------
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>chr3B_603
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------------------------------------------ATGAAACCAAACCAGCATCTTATCCTGCTGCTAATGGC
CAAGGAGCACACACA--CACACACACACACGTGATCCATGACAACA--------------------CAATAAACTAGGCG
ATTTAGGTAGCAGTTAGGAGTC---TGCAGCATCTTAATTATGAATGATAATAATAGT---AGCACAAGCACAACAAGGC
AAGCCAATCCAAAGCTTAGCTAAGCCAAGCCAGGGGTCCCTCCCTCCTCCTCC---CCCCCCTCCCTACCTCTCTCTGGT
CCCGACGACCCCTTCTCCCTTCT-----CGAA-CTCCAGCTGGCCACCCAGCTACCACCAAGCTACTGTCGCTCGCTCAC
CAATCCTCCCGTCTTGCCCGACTACACGCCAGCGCCATGGATGGTTAGCTAGCTAGCTCTTGCGCTCTTGTGCAATCCCT
TCCTCTGGGACTTGTCGTCATGGAGAGGCAGCGGGTGGTGGTGGTGGTGGAGGACGCCCCGGCGTCGCGCGCGGCGCTGC
AGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCTGCTGCACGTGTGCGCGCCGGCCCGCTCCAGGCGC
CGCCGCCGGTGCCTCCGCCTCCAAGGCTTCCAGCTCGCGCTCGCCTTCAGGGACCTCTGCGACGGCGGCGTCGCGGAGGC
CATGGTGGAGATCGTGGTGCGGGAGGGGGAACTCGCGCCGACGGTGGCCGCGGCCGTGGCGCAGCTCCGGGCCTCCACGC
TCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGTAAGCAGAT-AGATAAGATTCAGCTCGTCTGAACTCGC
CGCGAGGTGTCATGCTCTGAATTTGCTT----------------CGGTCAGGTCGCCGAGCCCGTACGAGGGCGCGGGCG
GGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCGGCGCGGGGCCGTGGAGGCGGAGCTCACCCAGGTG
GAGACCATACGGCTGCAGTAAGCGCACATCACAACCAATCACTACC------GTATTTTCTGACACCGAATCCACTTC--
-----TTGCTCTGACTGTACC-------GATCGAAACCCGCAGCGTGCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCG
CTGCCGCTGGGGGTGATCTGGCGGCGATCGTCGTCGTCGTCGTCAAAGAAGAGGAGGTGAATGAACGCACGCCG----AC
ATCTCCGGACGGACTTGTGTCTCAACCTGCAAGTTCATCCATCCAAC--CTCCTCTGCTTGCTAGCCCT-----GTACAG
ACAGACATCA----------TTTTTTTTTC----TTTTTGCCATAAATCTTTCTTCTTCTTCTTTCATAGCTCATCAAAT
CGAGAGATAGACACAGCACATCAATAGAACATGCATCGCC--------------------------------------GA
GTAGTATTTATTTCCTCGTGAAAGAACATGCCGTTGCTTCCTCTGGAGTTCGTCCATCCACAACAAAAAAA--AAGAGAG
AAAAGAAAAGAAACGACGCTCATGTCATGTGTGCACGTACAAGTA------------CAATCCAATCTATGAACCGGCAG
AAATTCCATGGAGAGGCGCTCCCCGTTTCACCAGCTGCGCAACACAAAG-------AGGAAAAAAAATGCAGGGATTCGT
CATGGTACCGTCTCTGTTT-CGACAGCCG-AAATGTGTGCCTTGTTTGATGGGCAGACAGAATCGACATGTTCTTCCTTC
TGTCAACA--------CCGACTGTAGATG---------------------------------------------------
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----------------------------------------------TACTTTCAAGTTGTACCATGCGCAAGCGGGAGTT
ATGTGTACCGGGCTCTCCTTTTTTTTTTGGAATCTTCAGTGGAGC-ATATAGCTTGGCATATCAAAAATTATAGAGTACT
AATTAGCACATATTCTTCCCTCTTTATCTTTTCTCTCTTCTCTCTTATGTTTTCTTTCTCTCTCATCTCTCTTTTCTCTC
TTCTATCTTACCCCCTTTGTAAAA-AAAACATTAGGTCAAATTTGGACCTAAAAACTTCAGAA---TGATGATTATCTGA
AATAGCTCATCCAAATGATTTTTTT-G-GCAAAAATAGAATCCATGGTTTTCTGTAAAAAATCTGACAAATCTCCATTCC
AAATTACTCGTCGCAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACCTGCGACAAGTAATTCGAA
ACAGAGGGAGTACATGTTACAAGAAGGGGCCATGCAAAAACCTCCTATTTTGGTAACCTGTGGGGGATGTTGAGCCATTG
GCTAGGCGCCGGGGAAAAAATAAATAGAACTTCCAAATATCGAAATGCGATGAATTTTCTTGTACAACTTGTTTGGAGAT
GGTGTTGAGCAAAAAAGAAGGACATGGTCGAAAGTGCTCTGTGAATTTCGCAGCAACCCGCCGCCCAAGATCCCGTTCCC
GATCTTGGCGCCGCCGCTGGGCGTGATCCGGAGGGGATCGCCGTCAAATAAGAGGAAATGAATGGATGCCAACATATCTG
GACTTGCATCCGGACTTTCAAGTTCATCTGTCCACCAACTCCTCTGCTTGC
>chr3B_707
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------------------------------------------------------------------CAATAAACTAGGCG
ATTTAGGTAGCAGTTAGGAGTC---TGCAGCATCTTAATTATGAATGATAATAATAGT---AGCACAAGCACAACAAGGC
AAGCCAATCCAAAGCTTAGCTAAGCCAAGCCAGGGGTCCCTCCCTCCCTCCCTCCTCCTCCCCC--TACCTCTCTCTGGT
CCCAACGACCCCTTCTCCCTTCT-----CGAA-CTCCAGCTGGCCACCCAGCTACCACCAAGCTACTGTCGCTCGCTCAC
CAATCCCCCCGTCTTGCCCGACTACACGCCAGCGCCATGGATGGTTAGCTAGCTAGCTCTTGCGCTCTTGTGCAATCCCT
TCCTCTGGGACTTGTCGTCATGGAGAGGCAGCGGGTGGTGGTGGTGGTGGAGGAGGCCCCGGCGTCGCGCGCGGCGCTGC
AGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCTGCTGCACGTGTGCGCGCCGGCCCGCTCCAGGCGC
CGCCGCCGGCGCCTCCGCCTCCAAGGCTTCCAGCTCGCGCTCGCCTTCAGGGACCTCTGCGACGGCGGCGTCGCGGAGGC
CATGGTGGAGATCGTGGTGCGGGAGGGGGAGCTCGCGCCGACGGTGGCCGCGGCCGTGGCGCAGCTCCGGGCCTCCACGC
TCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGTAAGCAGAT-AGATAAGATTCAGCTCGTCTGAACTCGC
CGCGAGGTGTCATGCTCTGAATTTGCTT----------------CGGTCAGGTCGCCGAGCCCGTACGAGGGCGCGGGCG
GGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCGGCGCGGGGCCGTGGAGGCGGAGCTCACCCAGGTG
GAGACCATACGGCTGCAGTAAGCGCACATCACAACCAATCACTACC------GCATTTTCTGACACCGAATCCACTTC--
-----TTGCTCTGACTGTACC-------GATCGAAACCCGCAGCGTGCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCG
CTGCCGCTGGGGGTGATCTGGCGGCGATCGTCGTCGTCGTCGTCAAAGAAGAGGAGATGAATGAACGCACGCCG----AC
ATCTCCGGACGGACTTGTGTCTCAACCTGCAAGTTCATCCATCCAAC--CTCCTCTGCTTGCTAGCCCT-----GTACAG
ACAGACATCA----------TTTTTTTTTC----TTTTTGCCATAAATCTTTCTTCTTCTTCTTTCATAGCTCATCGAAT
CGAGTGATAGACACAGCACATCAATAGAACATGCATCGCCATGATTGATCTTTTCCAAGTGCCGAAACAGGTACGGTCGA
GTAGTATTTATTTCCTCGTGAAAGAACATGCCGTTGCTTCCTCTGGAGTTCGTCCATCCACAACAAAAATAAGAGAAAAG
AAAAGAAAAGAAACGACGCTCATGTCATGTGTGCACGTACAAGTA------------CAATCCAATCTATGAACCGGCAG
AAATTCCATGGAGAGGCGCTCCCTGTTTCACCAGCTGCGCAACACAAAAGAGAAAAAGGAAAAAAAATGCAGGGATCCAT
GATGACACTGTCTCTGTTTTCGGCACCGG-AAATGCGTGTCCTGTCTGATGGACAGGCAGAATCCACATGTTCTTCC---
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>chr3A_797
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------------AGCCAAGCTTAGCTAAGCTAGGGGTCCCTCCCTCCTCCCCCTACCC-----------------CTGGT
CCCAACGACCCCTTCTCCATTCTTGAAACGAA-CTCTAGCTGGCTACCCAGCTACCAAGAAGCTACTGTCGCT----CAC
CAATCGCCATCTTCTTTCTTTCTTGAGTTGGCTGGC--------------------------------------------
------------------CATGGAGAGGCAGCGGGTGGTGGTGGTGGTGGAGGACGCCCCGGCGTCGCGCGCGGCGCTGC
AGTGGGCCGTGCGCAACTTCATCCGGGCCGGCGACTCCATCGCGCTGCTCCACGTGTGCGCGCCGGCCCGCTCCAAGCGC
CGGCGCCGGCGCCTCCGCCTGCGGGGCTTCCAGCTCGCGCTCGCCTTCAGGGACCTCTGCGACG---GCGTCGCGGAGGC
CATGGTGGAGATCGTGGTGCGG-------------------------------CGGTCGGCCAGCTCCGGGCGTCCACGC
TCGTCGTCGGCCTCCACGACAAGAGCTTCCTCTACGGGTACGGGTAAGCAGCAGAT-AGATTCAGTTCGTCGTCTCAACT
CTGAAG---------TCTGAATTTGCGTGTGTTCTCGTGACTGACGGTCAGGTCGCCGGGCCCGTACGAGGGAGTGAGCG
GGCTGGGGTGCCGGGTGCTGGCCGTCCGGCAGCACGCGACGGCGCGGCACGGGGCCGTGGAGGCGGAGCTCACCCAGGTG
GAGACCATACGACTGCAGTAAGCGCAC--CAGAGCCAAATACCACTGCATTTTC-TTTTCTGACACCAATTGAGGTTC--
-----TTGCTCTGACTGTAGACTGTACTGATCGAAACTCGCAGCGTGCCGCCGCCCAAGATCCCGTTCCCGATCTTCGCG
CTGCCGCTGGGCGTCATCTGGAGGCGAT------CGTCGTCGTCAAAGAAGAGGAGATGACTTAACGGATGGATGGCAAC
ATCTCCGGGCGAG-TTGTATCTGAACCTGCAAG-----------------TCCTCTGCTTGCTAGCCTT-----GCACAT
ACAGACAGACATCTTTTTTCTTTCCTTTTA----TTTTTGCCACAAATCTCTCTTCTTCTTGCATA--------------
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------------------------GTTTCACCAGCTCTGCAGCAAACAA---------GAGAAAAAATGCAGGGACCCAT
GATGACACTGTCTCTGTTTTCGACAGCCGAAAATGTGTGTCTTGTCTGATGGACAGACAGAATCGACATGTTCTTCCAGC
CTTGTGGCAACACCTCCCGAGCAACAGAGGATTTTATTACGAAGGGAAACCCCAGCTTCAGAGGATTTTTGAGGGTTTTT
TTTTGTTTGTTTTTGCCGGAGAACTTTTGAGGGTTTCTTCAGTCGTAAAACCCCACAGCTTTGTATGCCGACGGCTGTTA
CCATGTGATGTTCAAAACGGAGCGGCCGGGCCCACTCGCCAATACTCACTTCCAACTTGTACCCTGCGCAAGCGAGAGCT
ACGTGTACCGGGCTGTTCTTTTTCT----GAATCTTCATCGGGCATATATAGCTTGGCATATCAAAAACTATAGAGTACT
AATTAACACATATTATTCTCTCTTTCTCTTTTCTCTCTTCTCTCTTATGTTCTCTTTCTCACTCATCTCTCTTTTCTCTC
CTCTATCTTATCCCCTCTGTTAGA-AAA----TAGGTCAAATTTGGACCTAATAACTTCAGAAGGATGATGATTATCTCA
AATTGCTCATCCAAATAATTTTTTTTG-GCAAAAATAGAATCCATC----------------------------------
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---------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------S-S-------S-S-
--------S-S-S-SSS-----------------------------SSSSSSSSSSSSSSSSSSSS---------S-S--
--------------------SSSSS--S-------------------------S---SSSS-------------------
---------------------------------------------------S----------------------------
----------------------------S---S------------S--S-------------------------------
-------S--S----S-----S----S-------S------------S--SSSSS-------S---------S----SS-
SSSS--SS----------------------------------------------------------S-------------
-------S------------------------------------------------------------------------
-----------------S-----S--S---------------------S-------------------------------
-------------------------------------S------------------------------------------
----------------------------------------S---SS---------------------S------------
S--------S--SS-----------S------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------S--------------S--------S--S--------------S------------SS
SSSSS----------S----------------------------------------------------------------
-----------------------------------S--------S----------S-------------------S----
----------------------------------------S------SS--------------------SSSSS------
---------S-----------------S-SSSSS---------------------------S----SSS-----------
---S-----------S--------------------------------------SS-----------S----S------S
---S-S--------S----------S---------------------S-SS-SSSSSS-----------S----------
--------S----S--S--------SSSSSSS-SSSSSSSS-SSSSSSSSSSSSSSS---------------SSS----S
------------S----------------------------------------------------------S--------
--S--------------------------------------S-------------S----------S-------------
SSS-----------------------S-SSS-S-S-SSSSSS-SS-SSS--S-------------S-------S---S--
---------------S----S------------------------------------------------------S--S-
S--------------------------S--------S---------------------S-----S---------------
--S----S-----S----------S-----------------------S-----------------------S-------
------------------------------------S---------------------S---S-----------------
---S--------------------S-------------------------------------------------------
---------------------------S-------------S-----S--------------------------------
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>forward_148
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------------------------------------------------TGCTTGTACGCTTTTGTGGC------------
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>reverse_2188
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---------------------------GCATGGACGAACGCACATAC---------------------------------
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---------------------------------------------------
