>input_sequence_70535
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--------------------------------------ATGGACGCCCCGGACGTGACGCCGGCGTGGTCTCTGGTCCGC
GGCTACTTCTCCCCGGCGACGCTCTTCCTCCTCCTCAACGTCGTCATCGGCACCATCGCGCTCACCTCCCGCTCCCACCG
CCGCCGCCACGACCACCACGCCGACGACGACCGCCACCGCCACCAGCACCAGCACAAGGACCACGACGACCGGTACGCTC
CTCCCCCGCCTCCGGCCCCGCTGGCGCGCACGTCGTCCGTGATGGAGCGCCTGCGCTCCCTCGGCCTCTACCGCTTCCGC
TCCGGCGACTTCCCTCCCGAGTACAACTACAACTCTTCCTCCGCCGGCAACGTCGGCGAGGACGACGACGAGGGCGGCAA
GCAGCAGCAGTACAGCAGGAGCCGGTCTGAGCCGGCCGCGAGGAAGCCGGCGAGCAAGACGGGCAACGAGGCGGAGAAGG
CGGCCAGGGCGAAGGTGGCGAAGAAGCCGGTAACGGAGACGGAGGTGAGGAGGCTGGAGCGCGCCCCGGTGCCGGCGCCG
GCGCGGCTGGTGCAGCGCGCGCCGAGGGCCCCTGCGGCTCGCGCGGTGCTGACGGAGGCGAGGCGGCAGGACGCAGGGGC
GCCGGAGGCCGCGTGCGTGGACGAGAGGGCGGACGACTTCATCAACAAGTTCCGGCAGCAGCTGCAGCTGCAGAGGCTCA
ACTCGCTGCTCAACTACAAGGAGATGCTCAACCGCGGCGCGTAG------------------------------------
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>chr3A_1_TraesCS3A01G250800
CGTGCTTCGGAATCTTACTAAATAATGGATTGAAATTGAAGGGCATCTGTCTTGTCCATGTTAAAGATGCGCATGTGCAT
AGGCTGATGGGATCGTCCCAACAGCGCAATTCACGTTAAGCCGCGGTGGATCGAGTCAGATTGACCTGCCGCGGTTCCGA
TCTGGCCACCAGGGCAGGTCGCGGCACGTGACATGTGCCAAGGCACAATCGGCAAGTGGACTTG-ATCACTAGCTGGACG
GTTTCTCCACGTGGTTCCTTCATCTGAC--------------------------TAGCTTGTTGCATCGAAATGATAAAC
CAACACACCTCACGGCACCATTCAAGCTGGTCACGGGGCTATTGTTGTGAGAAGTAAACGAGTTATGCATCTTGATTCTC
AGACTCTCCATACACATAATTGAATCAATCGACTCTTTCAAAAATCAAAATAGTCACTCTACACTCTAGCTCT------C
TTGTTTGGATAGATCGGGAGATGTGGATTGACGAGGTAGAGTGTTCTTTTCTTCTACACCAAGCGCTCAGCTTGGCAAGC
CACCAACAAAAATTGCAATCAAGAGTGTTCTTTTTTACGAGCTAGAGTGCCACTATCATTATTTTGTTATATGATGATG-
----------------------------------ACGCTAGGGCCGACGCGATGCTCAGTGAGTCAGTGGTGGGTCACA-
-----GCGGCTTGCATTGAATTGAGCCCATGGGTCTGGGGATCTCCAACCTGGCACGGTACATGGTCGGCTATGGGTGCA
CGAGGAGGCGGCACTCTTGTACACACGGTTTCTCCCTCCCCAGCAAGCATTCCCCCGCTCCACCGCCGGGCACCGGCCTC
CGCGCGCCGCGTGGCCTCCCCCTTCCTTCTCCTCGTATAT---TATCACCGCGCCGAGCAGCCAAGCAGGCAACCGAAAC
ATCATCAGCACA-CCAACGCACCGACGTCTCCTAGTACCTGGCTTGGCTTAGCTACCTCCGCACCAGTTCGCCCGTCTCC
TCACCGATCCTCGCCGCGGCGCGAGCTCGATCGGACAAATGGACGCCCCGGACGTGACGCCGGCGTGGTCTCTGGTCCGC
GGCTACTTCTCCCCGGCGACGCTCTTCCTCCTCCTCAACGTCGTCATCGGCACCATCGCGCTCACCTCCCGCTCCCACCG
CCGCCGCCACGACCACCACGCCGACGACGACCGCCACCGCCACCAGCACCAGCACAAGGACCACGACGACCGGTACGCTC
CTCCCCCGCCTCCGGCCCCGCTGGCGCGCACGTCGTCCGTGATGGAGCGCCTGCGCTCCCTCGGCCTCTACCGCTTCCGC
TCCGGCGACTTCCCTCCCGAGTACAACTACAACTCTTCCTCCGCCGGCAACGTCGGCGAGGACGACGACGAGGGCGGCAA
GCAGCAGCAGTACAGCAGGAGCCGGTCTGAGCCGGCCGCGAGGAAGCCGGCGAGCAAGACGGGCAACGAGGCGGAGAAGG
CGGCCAGGGCGAAGGTGGCGAAGAAGCCGGTAACGGAGACGGAGGTGAGGAGGCTGGAGCGCGCCCCGGTGCCGGCGCCG
GCGCGGCTGGTGCAGCGCGCGCCGAGGGCCCCTGCGGCTCGCGCGGTGCTGACGGAGGCGAGGCGGCAGGACGCAGGGGC
GCCGGAGGCCGCGTGCGTGGACGAGAGGGCGGACGACTTCATCAACAAGTTCCGGCAGCAGCTGCAGCTGCAGAGGCTCA
ACTCGCTGCTCAACTACAAGGAGATGCTCAACCGCGGCGCGTAGCCTCCCGCCCGCCCGCCCGCACGCACGGGGAGCAGA
TGCAGATCAGCTTGTGCGGGGTTCGATCTTCGATTAGCTACTAGCTAGTGGTCTTGCCGTTTGTTCATTGGATTGTTG--
------TGTAGTTGTGCCGTGTATGAGAC---GCTGCAGGTCAATTTGGATCCTGCTAAAAACATTACAGAAGAAGCTTC
CATTTCCTCTCTTAGATCCGTTCGTCCGGTGAATCCAAACAATA---GTACGTATAAATGGGAATGGAGGCGTGGGAGAA
GAGCAAAGAATCCAACTGCTCCAGCCTGTTTGTGTGATTTCCTACGATGAACACGCCAGCCAATTCGCATATTTCAAAAA
GCAAAACGTAAAAAATAGGACATCTTGCAAAAAGGAGCCTGCGTGAGGGACGAAAAGAAGCCCGCTTGTAGTATTTGCCA
ACTCTTGCATAACTAGGCCAAGATTCCATCCTCCCATGACTGGGAAAAGAAGCCCGCAGTTATTCAGTAGACTTTTTC--
TTTTACAAAAGCTTTGCCTCATTTCATTAATTGA--AAAAAAAGAATTATCCTGTTATTTACGGAAAATCGGACAAAAAC
CGCCAGAACACAGGAAGGGGCACCACCAGCCGACCTAACTATCAACACAAAACCCACACACGTCGTCAAGGAGTGCCGCC
CTTGCGGCCACAACGGCCATCAAACTTTAGGGTCGTCGCTCATGATCCAAAGCGCCGCCTGCGCCATAGATTTGCGGGTT
ACAAGGTTCCTACACCAAATAAAACTTTTCGCTTGTGCCGCAACAACACTAACAAGGGTGTTAACCTTGATGGCTTTGCT
AGTTGTACAAGATATTAAAAGATAGTAATGTGATAGGTAATATTTTTGTAATTTGAGAATAAATAATAGGTGAAAATAAA
AGTGCAAGTAAAAGTTACTGGAAGTGTTTCATTAAGCTCAAAATTGGATCGGGGCTTATAGGTCACCTAGTGTAATTCTC
TATAAGGTAAATAGTGCATCAA
>chr3D_1
CGTGCTTCCGCATCTTACTGAATAATTGATTGACATTGAAGGGCATCTATCTTGTCCATGGTAAAGATGTGCATGTGCAT
AGGCTAATGGGATCGTCCCAACAGCGCAATTGACGTTAAGTCGCGGTGGATCGAGTCAGGTTGACCTGCCGCGGTTCCGA
TCTGGCCACTAGGGCAGGTCGAGGCACGTGACATGTGCCAAGGCACACGCGGCAAGTGAACTTCCATCACTAGCTGGACG
GTTTCTCCACGTGGTTCCTTCACCCACCCGGCTGTTAAAACCTGGATGGCATATTAGCTTGCTGCATCGGAATGATAAAC
CAGGCGTCACC-----------CAAGCTGGTCATGGGTATATTGTTGTGACAAGTAAAAGAGTTAAGATTCTC-------
----------TACACATAATTGAATGAATCGACTCTTTCAAATAGTCCTCCAAA----------TCTAGCTCTCAGCTGC
TTGTTTGGATACATCGGGAAATGTGGATTGATGAAATG------------------------------------------
------------------------------------ACGAGCTAGAGTGCTATCATTGTTGTTTCGAAAAAAGGAGAGCG
CCACTATCGTTCATTTTGTTACTATGATGATGAAACGCTAGGGCCGACGCGATGCTCAGTG--------GTGGGCCACAG
CACACGCAGCTTGCATTGAATTGAGCTCATGGTTTTGGGGATCTCCAACCTGGCACGGTCCATGGTCGGCTACGGGTGCA
CGAGGAGGCGGCACTCTTGTACACACGGTTTCTCCCTCCCCAGCAAGCATTCCCCCGCTCCACCGCCGGGCACCGGCCTC
CGCGCGCCGCGTGGCGTCCGG----CCTCTCCTCGTGTATATTTATCACCTCGCCGAGCAGCCAAGCAGGCAACCGAAAC
ATCATCAGCACACCCAACACACCGACGTCTCC---TACCTGGCTTGGCTTAGCTACCTCCGCACCAGTTCGCCCGTCTCC
TCACCGATCCTCGCCGCGGCGCGAGCTCGATCAGCCAAATGGACGCCCCGGACGTGACGCCGGCGTGGTCTCTGGTCCGC
GGCTACTTCTCCCCGGCGACGCTCTTCCTCCTGCTCAACGTCGTCATCGGCACCATCGCGCTCACCTCCCGCTCCCACCG
CCACCGCCACGACCACCACGGCGACGACGACCGC---------CACCACCAGCAGAAGGACCATGACGACCGGTACGCTC
CTCCCCCGCCTCCGGCCCCGCTGGCGCGCACGTCGTCCGTGATGGAGCGCCTGCGCTCCCTCGGCCTCTACCGCTTCCGC
TCCGGCGACTTCCCTCCCGAGTACAACTACAACCCTC------CCGGCAACGTCGGCGAGGACGACGACGAGGGCAGCAA
GCAGCAGCAGTACAGCAGGAGCCGGTCTGAGCCGGCCGCGAGGAAGCCGGCGAGCAAGACGGGCAACGAGGCGGAGAAGG
CGGCCAGGGCGAAGGTGGCGAAGAAGCCGGCCACGGAGACGGAGGTGAGGAGGCTGGAGCGCGCCCCGGTGCCGGCGCCG
GCGCGGCTGGTGCAGCGCGCGCCGAGGGCCCCTGCGGCTCGCGCGGTGCTGACGGAGGCGAGGCGGCAGGACGCAGGGGC
GCCGGAGGCCGCGTGCGTGGACGAGAGGGCGGACGACTTCATCAACAAGTTCCGGCAGCAGCTGCAGCTGCAGAGGCTCA
ACTCGCTGCTCAACTACAAGGAGATGCTCAACCGCGGCGCCTAGCCTCCCGCCCGCCCGCCCGCCGGCACGCGGAGCAGA
TGCAGATCAGCTTGTGCAGGGTTCGATCCTCGATTAGCTAGTAGCTAGTGGTCTTGCCGTTTGTTCATTGGATTGTTG--
------TGTAGTGGTGCCGCGTATGAGATGCTGCTGCAGGTTAATTTGGATCCTGCTAA---CATTACAGAAGAAGCTTC
CATTTCCTCTCTTAGATCCGTTCGTCCGGTCAATCCAAACAATA---GTACGTATACATGGGAATAGAGGCGTGGGAGAA
GAGCAAAGAATCCAACTGCTCCAGCCTGTTTGTGTGATTTCCTACGATGAACACGCCA----ATTCGCATATTTCGAAAA
GCAAAACGTAAAAAACAGGACATCTTGCAAAAAGGAGCCTGCGTGAGGGACGAAAAGAAGCCCGCTT---GTATTTGCCA
ACTCTTGCATAACTAGGCCGAGATTCCATCCTCCCATGACTGGGAAAAGAAGCCCGCAGTTATTCAGTAAG-TTTTTC--
TTTTG--AAAGCTTTGCCTCATTTTATTA----A--AAAAAAAGAATTATCCCGTTATTTACGGAAAATCGG-CATAAAC
CGCTACAACACAGGAAGGTGCACCACCAGCCGACCTAACTATCAACACAAAACCCACAAACGTTGTGAAG----------
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>chr3B_597
T-------------------------------------------------------------------------------
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--------------------------ATGATGAAACGCAAGGGGCGACGCGATGCTCAATG--------GTGGGCCACA-
-----GCAGCTTGCATTGAATTTAGCTCATGGGTCTAGGGATCTCCAACCTGGCACGGTCCATGGTCGGCTACGGGTGCA
CGAGGAGGCGGCATTCTTGTACACACGGTTTCTCCCTCCCGAGCAGGCATTCCCACGCTCCACCACCGGGCACCGGCCTC
CGCGCGCCGCGTGGCCTCCGA----CTTCTCCTCGTATATG--TATTCCCTCGCCGGGCAGCCAAGCAGGCAAACGAAGC
AT------------CAACACACCGACGTCTCC---TACCTGGCTTGGCT-----ACCTCCGCACCAGTTCGCTCGTCTCC
TCACCGATCCTCGCCGCGGCGCCAGCTCTGCTAC----ATGGACGCCCCGGACGTGACGCCGGCGTGGTCTCTGGTCCGC
GGCTACTTCTCCCCTGCGACGCTCTTCCTCCTCCTCAACGTCGTCATCGGCACCATCGCGCTCACCTCCCGCTTCCACCG
CCGCCGCCACGACCACCACGGCGACGACGACCGCCACCACCAGCAGCACCAGCACAAGGACCACGACGACCGGTACGCCC
CTCCCCCACCTCCGGCCCCGCTGGCGCGCACGTCGTCCGTGATGGAGCGCCTGCGCTCCCTCGGCCTCTACCGCTTCCGC
TCCGGCGACTTCCCTCCCGAGTACAACTACAACCACTCCGCGGCCGGCAACGTCGGAGGCGACGACGACGAGGGCAGCAC
---GCAGCAGTACAGCAGGAGCCGGTCTGAGCCGGCCGCGAGGAAGCCGGCGAGCAAGACGGGCAACGAGGCGGAGAAGG
CGGCCAGGGCGAAGGTGGCGAAGAAGCCGGTC------ACGGAGGTGAGGAGGCTGGAGCGCGCCCCGGTGCCGGCGCCG
GCACGGCTGGTGCAACGCGCGCCGAGGGCTCCTGCGGCTCGCGCGGTGCTGACGGAGGCGAGGCGGCAGGACGCAGGGGC
GCCGGAGGCCGCGTGCGTGGACGAGAGGGCGGACGACTTCATCAACAAGTTCCGGCAGCAGCTGCAGCTGCAGAGGCTCA
ACTCGCTGCTCAACTACAAGGAGATGCTCAACCGCGGCGCGTAGCCTCCCGCCCGCCCGGTCGCCGGCACGCGGAGCAGA
TGCAGATCAGCTTGTGCGGGGTTCGATCTTCGATTAGCTACTAGCTAGTGGTCTTGCCGTCTGTTCATTGGATTGTTGAC
TTGTTGTGTAGTTGTGCCGTGTATGAGTC---GCTGCAGGTTAATTTGGATCCTGCTAA---CGTTACAGAAGAAGCTTC
CATTTCCTCTCTTAGATCCGTTTGTCCGGTTAATCTAAACAAAACTCGTACGTATACATGGGAATGGAGGCGTGGGAGAA
GAGCAAAGAATCCAACTGCTCCAGCCTGTTTGTGTGATTTCCTACGATGAACACGCCA----ATTCGCATATTTCAAAAA
GCAAAACGTAAAATATAGGACATCTTGCAAAAAGGAGCCTGGGTGAGGGACGAAAAGAAGCCCGCTT---GTATTTGCCA
ACTCTTGCATAACTAGGCCGAGATTCCATCCTCCCATGACTGGGAAAAGAAGCCCGCAGTTATTCAGTGGACTTTATTAT
TTTTG--AAAGCTTTGCCTCATTTCATTA----ATAAAGAAAAAAATTATTCCGTTATTTACGGAAAATCGGACAGAAAC
CGCTACAACACAGGAAGGGGCACCACCAGCCGACCTAACTATCAACACAAAACCCACACATGTCGTCTAGGAGAGCCGCC
CTTGTGGCCGCAACGGCCACCAAACTTTAGGGTCGCCGCTCATGATCCAAAGCTTTG-----------------------
----------------------------------------------------------------CCTTGATAGCCTTGCT
AGTTGTATAAGATATTAGAAGATTGTAATGTGATAGGTAATATTTTTGTATTTTCAGAATAAATAATAGGTGAAAATAAA
AGTGCAAGTAAAAGTTACTCGAAGTGTTTCATTAAGCTCAAAATTGGATCGGGGTTTATAGGTCACTTAGGGTAATTCTC
TATAAGGTAAGTAGTGCATCAA
>SNPs
--------S-S--------S------S------S--------------S-----------S--------S----------
-----S-------------------------S--------S------------------S--------------------
---------S-----------S-------------------------SS---------S----S----------------
----------------------S-SSS----------------------------------S-------S----------
--SSSSS-SS-SSSSSSSSSSS-----------S---SS-----------S-------S------S-SS---SSSSSSSS
SSSSSSSSSS---------------S----------------S-SSSSSSS-SSSSSSSSSSSS----------------
-----------S-------S-----------S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-SS--SS--S---S-SS-S-S-SS--SS-
-------------------------------------------------------------SSSSSSSS-----S-----
-------S------------------S--------------------------------S------------S-------
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-------------------SSSSSS-------------------------S-----------------------------
------------------S-------------SSS---------------------------------------------
--------------------------------S-S---------------------------------------------
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--------------------S-----------------S---S-------------------------------------
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---------------------------------S-----S-S---------------------------------S----
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-------------------------------S------------------------------------------------
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----------------------------------------------------------------SS-----S--------
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-----------------------------------------S-----------------SSS------------------
------------------------------S-------------------------S-----------------------
----------------------------------------------------------SSSS------------------
-------------------------------------------------------------------SSS----------
-------------------S------------------------------------------------------------
----SSS----------------------SSSS-------------------S----------------------S----
---S-S-------------------------------------------------------------------S------
----S----S---------S---------------S-----------------SSS-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S-----
-------S---------S-----S--------------------------S---S-------------------------
-------------------S----------------------------------S-----------S---S---------
----------S-----------
>forward_708
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------------------------------------------------GCGATGCTCAGTGAGTCAGT------------
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>reverse_2396
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---------------------------------------------------------------------------AAAAC
CGCCAGAACACAGGA-----------------------------------------------------------------
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