>input_sequence_70525
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-------------------------CCAT--------CCACCGATCCGCCTGCATTTACTCCC--GTCTCCGGCGGCGGC
GGCAGAGCTGAGCTGATCTAGGTTGGGGGCGGGGCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGC
AGATCGGGCCGGAACTACTACTACGGCGACGCGTCCGGGTCCGGGGCCAGCACCAGCGG---GGGC---------CTGAG
CCGGAGCTACTCGGCCAGCGTCACCGCCACCCGGGACGGCAGCGCCGGGGCCAGCGGGAGCGGGAGCGGGGGCGGGAGCT
CGTCGTCGGAGCAGCAGAAGAAGGAGGAGGCCGAGTCCCGGCGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTCAAGGAG
CACCGCGCGCGCTTCTACATCGTCCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGCTCCGGCCGGGAGC
TGC--------------CCACATTCTTTCAATCGTTTGCCTCTGCTCTTGCACTGCTGCTGCTGTAGCCACGTACCGGCG
TACATTTCTTCCCC-TTTCTC----GGCCTAGCCGAGCTCTCCATCCATCCGTCTCAGCCTATATAATCTTAGCCGCTTC
CTCTTCTTCTTCTTGCTAC-------------------------------TGCTTAATTTTGCTGTTGATGTTTTT-CCC
CACCGCGATTTGGGTTATGTACAGTACATCAGCCATGAGCACCACCACAAGG--CAAGGTAAT------CTAGCTAGCTA
GCAGTCCCGTCACAATCAATCAGCCACCATTAC-----------------------------------------------
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>chr3D_1_TraesCS3D01G532700
AGTGCTCCAGTACTCACTGCCAGTGGTAGTTGTAGTTACCAGTGTGGCAAATACTTTGCAGGAGAAAAATATAT--TTCA
AAAGGGTCA----CCGACCGACGGGACGGACGCCGTGCAACGGCTAACATGGGC-----TGATTTGACAGTGGCGAGCG-
-------------------GGCGTGGCCGGCAGCTTTGCGCGCGATCATGTGGCGTGATTCAGAGGTTACGCACAGTGAT
CGCAGTAAATCGGAGGCTGGCTGGCCGTGAGCGAGGGTACTACTACACCACTTGTAACTTTAATTTTATGTTTGTACTGC
GTGTAGTACCGGGGCTG---GTACGCTACACTATACTCCTCCACCAGCTGCTGCGTGCGTGGTTGTGCGTGAAACGAAGT
GAAATTGGGGAGGCGACAGTGTAGGTACCAACAGAATTTTTAGAGCCGCGTAGGCTTCTGCGTCTGCGTCT---GCACCA
TCTGCGGCGGCTTTTCTACCATCTCGAGATGGTC---GGCGCGGCAGGTGGATCCGACGGGCCACAAGATTCCACTTGCA
CCACCACCACCATTGGTCGATCGATCGGTCGGTCA---CATACGGAATGTACTCTGCTACTTGGAGTGGTGCGTCTGCGT
TTTCATGGCGGTAGCGGCCAAGCACAGTGAGTG----AGTGAGTGAGAGTGAGTGAGCGAGTGAGTGGTGCGGTGGTACG
TAGCTAGCTGGTGCCTGGTT-----GGAGGAGTTGTCTTCCATCCGTCGAAGGGTTGGGGTCGGCGTTGGGGTCGGGGTC
GGGTTTCATTTGTTTCGGAGCGGAGCGAGGCGAGGAGAAGCCAGCTGAG-----CTGAGCTGAGGAGGGAGGAGACAGGG
CGGCCCCATTCCCACTCCCTCCCACTCCCTCACTCCCTGCTCTGCTCTGCAGCTAGCACACCATTCATTGATTCACTCGC
--------CCGCTCGCTCGCTCCATTGCTTCTTCTATCTATCCCTTGCTCTGCTCGCTCTGCTCATTCCACGCGCACTGT
CCACTCCATCCATCCCCATCCCCATCCAT--------CCACCGATCCGCCTGCATTTACTCCC--GTCTCCGGCGGCGGC
GGCAGAGCTGAGCTGATCTAGGTTGGGGGCGGGGCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGC
AGATCGGGCCGGAACTACTACTACGGCGACGCGTCCGGGTCCGGGGCCAGCACCAGCGG---GGGC---------CTGAG
CCGGAGCTACTCGGCCAGCGTCACCGCCACCCGGGACGGCAGCGCCGGGGCCAGCGGGAGCGGGAGCGGGGGCGGGAGCT
CGTCGTCGGAGCAGCAGAAGAAGGAGGAGGCCGAGTCCCGGCGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTCAAGGAG
CACCGCGCGCGCTTCTACATCGTCCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGCTCCGGCCGGGAGC
TGC--------------CCACATTCTTTCAATCGTTTGCCTCTGCTCTTGCACTGCTGCTGCTGTAGCCACGTACCGGCG
TACATTTCTTCCCC-TTTCTC----GGCCTAGCCGAGCTCTCCATCCATCCGTCTCAGCCTATATAATCTTAGCCGCTTC
CTCTTCTTCTTCTTGCTAC-------------------------------TGCTTAATTTTGCTGTTGATGTTTTT-CCC
CACCGCGATTTGGGTTATGTACAGTACATCAGCCATGAGCACCACCACAAGG--CAAGGTAAT------CTAGCTAGCTA
GCAGTCCCGTCACAATCAATCAGCCACCATTACTAGCTAGCTAGCTCAGGAGCTCTGCTCTCTTCTTTGTTTATCTCCTC
CTCCTTTT-CCTAGTACTACTCATAAGACTTAAATTTGTGCAGCTAGCTTCATTTCAATTTGATG---------------
---------TTTGATTCTGAGTGAGTGAGGGAGGTCGTTCGTTGAAGAACAAACATGCAAGATCAATCCATGTCGTT---
TTCCTTCATCTTTCC---GTTGATTAATTGCTGGTCCTTGTACGTAGTACCAATAATTT----GTTGTTTGCGGTTCAAA
TCCGGTTGGCGGA------------GGGAGGGCGGTCAATTGACCGGAT----GAGGCTCACGCATGCACGCACGCAGAG
AT---TGAATCGATCAGGCTCAGGAGTTAAGGGGCTCGT--------CGGCCGGCCAATCATTGTGTTAGTCTTAGTGGA
CGCCGGCCGGTCAATCGATCTGCTGCTGATGATGATGATGATGATGATGGGG-GAGTACAATTAGGTGGGGGATGCAAAT
GCAACAC-------------------------------------------------------------------------
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---------------------------------------------------AAGTGATGC----------------AGCT
TGTCAATTTGTTGGTGGGATTCAGGCATGGCATGGCGATAATGTTAGCCAGCATGGTCCCCTCGCTCATGCTCGCCCTCC
CTATTCAGTCAAGCCAATCAGTAGACCAAATGTTGGCTTGCTTAATCTCGCA----------------------------
---------------------GCCGTCGCCGTCCGTCGTCGGCCATGCACCACTACCACTGCCATGCAGGGCTCACTCTA
GAA---------GAAAGGAAGAAAGAAGATTCAACGCATTGTGTTTGGATCC----TTCTTTTTTACTGGTATACTCTAG
CAGGTTATTACTACTGCATGGTAAGTACTTTCACCGCGCGGTATGGACGCA---TGCATGGACGTACGGGACACATGCGC
GGCACGTGCGAGATTCCCGTTGGCTGCTAACCGCTTCTTCGATTCGCCAAGGGCCATGCAAATATATATGTATGCATAT-
---ATACGCGCCCAGCGTACGGACTGCCTCTCACTGTAATTTTTTTTACTG-TTAACATTTGTGG-----TACAAACTTA
GGTTCCAAGTTCCAACTACCTAGTAGGAGTA
>chr3A_59
----------------------------------------------------------CAGGAGAAAATTGAAATATTCA
AAAGGTTGGCTTGCCGACCGACGGGACGGACGCCGTGCAACGGCTAACATGGGGTGATTTGATTTGACGGTGGCGGGCGG
GGCGGGGCGGGGCGGGGCGGGCGTGGCCGGCAGCTTTGCGCGCGATCATGTGGCGTGATGCAGAGGTTATGCACAGTGAT
CGCAGTAAGTCTGGCGCCACTCCTACC-----------------------------ACCTTTAAATTTTATTTGTACTGC
GTGTGGTAGTAGTAGTGGTAGTACGCTACCACTATA--CTCCAGCAGTTGCTGCGTGCGTGGTTGTGCGTGCAGTGAAGT
CGGGAGGAGACAGTGT-AGTGTAGGTACCAACAGAATTTTTAGAGCCGCGTAGCATAGGCT-------------------
TCTGCGGCGGCTTTTCTTCCATCTCGAGATGG-------CAGGGCGGGTGGATCCGACGGGCCACAGGATTCCGCTT---
CCGCCACCACCGTTGATCGATCGGTCGGTCGGTCA---CAGACGGAATGTACTCTGCTGCTGGGAGCGCTGCGCTTGCGT
TTTCATGGCGGTAGAGGCCAAGCACAGTGAGTGTGAGAG----TGAGAGTGGTGCGGTGG--------------------
----TAGCTGGTGCCTGGCTGGGAGGGACGAGTTGTCTTCCATCCGTCGAAAGGTTGGGGTT------------GGGGTC
GGGTTTCATTTGTTTG-----GGAGCGAGGCGAGGAGAAGCCAGCTGAG-----CTGAGGAGG---GGGAGGAGACAGGG
CGGCCCCATTCCCACTCGCTCCCACTCCCTCACTCCCTGCTCCGCTCTGCAGCTAGCACACCATTCATTGATTCACTCGC
TCGCCCGCCCGCTCGCTCGCTCCATTTCTTCTTCTATCC-------------CTCGCTCTGCTCATTCCACGCGCACTGT
CCACTCCATCCGT--CCATCCCCATCCATCTCCACCGCCACCGACCCACCTGCATTTACGTTTCAGTCGCCGGCGGCGGC
GGCAGGGCTGATCTGGGTTGGAA----------GCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGC
AGATCGGGCCGGAACTACTACTACGGCGACGCGT------CCGGGGCCAGCACCAGCGCCGGCACCAGCGGGGGGCTGAG
CCGGAGCTACTCGGCCAGCGTCACCGCCACCCGGGACG---GCGCCGGCGCCAGCGGGAG------CGGGGGCGGGAGCT
CGTCGTCGGAGCAGCAGAAGAAGGAGGAGGCCGACTCCCGGCGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTCAAGGAG
CACCGCGCGCGCTTCTACATCGTCCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGGACCTGCCGGCCAC
CTCCGGCAGGCCGGCCGCCACATTCTTTCAACCGTTTGCTTCTGCTCTTCTA---CCGCTGCTGTAGCTACGTACAT---
----TTCCTTCCCCCTTTCTTGGCTGGCCTAGCCGAGCTCTCCATCCAT---TCTCAGCCTATATAATCTTCTTAGCTTC
TTCTTCTTCTTC------------------------------TTGCTGCTTGCTTAATTACTTTCTTGATGTTTTT-CCC
CACTGTGATTTGGGC-ATGTACAGTACATCAGCCATGAGCGCCACCACCAGCACCAAGGTAAT------CCACCTAGCTA
GCAGTCCCGTCA----CAATCAGCCACCATTACTAGCTAGCTAGCTCAGGAGCTCC----------------ATTTCGCT
CTGTTTTT-CCTAGTACCACG---GAGACTTAAATTTGTGCAGCTAGCTTCATTTCAATC--AAATTTGTCCTAGCACCA
G-CTGATGTTTTGATTTCGAGTGAGGGAGGCCGTTGAAGCA-------------AAGCAAGATTGATCCATGTCGTTCCA
TTCTTTCACCTTTGC---GTTGATTAATTGCTGATCCTTGTACCG-GTACCAACAGTTT----GTTGTTTGCGGTTGAAA
TCCGGTTGGC----------------GGAGGGCGGTCAATTGACCGGACGGACGAGGCTCACGCACGCGCGCACGCAGAG
AT---TGAATCAATCA------GGAGCTCAGGGGCTCGCTCGTCGGCCGGCGGGCCAATGATTGTGCTAGTCTTATTAGT
GGAC-GCCGGTCG-TCGATCTGCTGGG--------TGGTGATGATGATGGGGAGAGTACAATTAGGTGGGGGATGGGAC-
GCAACGC-------------------------------------------------------------------------
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---------------------------------------------------AAGTGAGTGAGAGTGAGTGAGAGGGAGCT
TGTCAATTTGTTGGTGGGATTCAGGCATGGCATGGCGATAATGTTAGCTAGCATGGTCCCCTCGCTCATGCTCGCCCG--
--ATTCAGTCAAGCCAATCAGTAGACCAAATGTTCGCTTAATCTAGCAGCTGGGCCTCACCCGTCGCCATCGCCGTCGCC
ATCGCCATCGCCGTCGCCGTCGCCGTCGCCGTCCGTCGTCGGCCATGCAATGC-ACCACTGCCATGCAGGGCTCACTCTA
GTCTACAAGGAAGAAAGAGAGAGAGAAGATTCAACGCATTGTGTTTGTACCC----TTTTTTTTACTGG---TACTCTAG
CAGGTTGTTACTACTGCATGGTAAGTACTTTCACCGCGCGGTATGGACGCA---TGCATGGACGTACGGGACACATGCGC
GGCACGTGCGAGATTCCCGTTGGCTGCTAATCGCTTCTTCGGTTTGCCAAGGGCCGTGAAAATATATGTATG------T-
---ATACGCGCCCTGCGTACGGACTGTCTGGCACTGTGATTTTTTTACTGGTA----ATTTGTGGTACTCTACAAACTTA
CGTTCCAAGTTCCAACTACCTAGT-------
>chr3B_389
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----------------------AGGTACCAACGGAATTTTTAGAGGCGCGTAGGCGTCTGCACCAGCACCAGCAGCACCA
TCTGCGGCGGCTTTTCTTCCGTCTCGAGATGGTTCAGGGCAGGGCAGGTGGATCCGACGGGCCACGGGGTTCCACTT---
CCACCGCCACCATCGATCGATCCATCGGTCACAGACGCCAGACGGAATGTACTCTGCGT---------------TTGCGT
TTTCATGGCGGTAGCGGCCAAGCACAGTGAGTG----AG----TGAGAGTGAGCTGAGCT--------------------
----GAGCTGGTGCCTGGTT-----GGAGGAGTTGTCTTCCATCCGTCGAAGGGTTGGGGTC------------GGGTTG
GG------TTTGTTTG-----GGAGCGAGGCGAGGCGAAGCCAGCTGAGCTGAGCTGAGGAGG---GGGAGGAGACAGGG
CGGCCCCATTCCCACTCCCTCCCACTCCCTCACTCCCTGCTCTGCTCTGCAGCTAGCACACCATTCATTGATTCACTCGC
--------C--------CGCTCCATTTCTTCTTCTATC-------------GCTCGCTCTGCTCATTCCACGCGCACTGT
CCACTCCATCCATCCGTC----------T--------CCACCGACCCGCCTGCATTTACGTCTAAGTCGCCGGCGGCGGC
GGCAGGGCTGATCTAGGTTGGAA----------GCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGC
AGATCGGGCCGGAACTACTACTACGGCGACGCGTCCGGGTCCGGGGCCAGCACCAGCGGCGGGGGC---------CTGAG
CCGGAGCTACTCGGCCAGCGTCACCGCCACCCGGGACGGCAGCGCCGGCGCCAGCGGAAG------CG------GGAGCT
CGTCGTCGGAGCAGCAGAAGAAGGAGGAGGCCGAGTCAAGGAGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTGAAGGAG
CACCGCGCGCGCTTCTACATCGTCCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGGACCTGCCGGCCAC
CTCCGGCAGGCCGGCCGCCACATTCTTTCAATCGTTTGCTTCTTCT-TTCCA---CTGCTGCTGTAGCTACGTACCGGCG
TACATTTCTTCCCCCTTTCTC----CGCCTAGCCGAGCTCTCCATCCATCC----CAGCCTACATAATCTTAGCCGCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTGTTGCTGCTTGCTTAATTACTTTCTTGATGTTTTTTCCC
CACTGCGAATTGGGTG-TGTACAGTACATCAGCCATGAGCGCCACCACCACCACCACAAGGTAATCTAGCTAGCTAGCTA
GCAGTCCCGTCA----GAGTCAGCCACCATTACTAGCTAGCTAGCTCGGGAGCTCC----------------ATTTTGCT
CTGTTGTTTCCTAGTACTCCTTCCGAGACTTAAATTTGTGCAGCTAGCTTCATTTCAATTATAAATCTGTCCTAGTTCCT
ACCTGGTGCTTTGATTTTGAGTGAGTGAGTGAGGCCCCTTGATGAAGAACAAACATGCAAGATCAATCGATGCTGTT---
TCATTTCGTCTTTACACTGTCTACTAATTGGTGGTCCTTGTTACAAGTACTATCAATTATCTCGTTGCTTGCGATCCAAA
TTGTTGAGCTAACTAGCTGGCTCGCGGGCGGGCGGTCAATTGACCGGAT----GAGGCTCACGCACGCACGCACGCAGAG
ATTGATGAATCAATGA------GGAGCTCAGGGGCTCGCTCGTCGGCCGGC----CAATGATTGTGTTAGTCTTAGTGGA
CGCCGGCCGGTCG-TCGATCTGATGATGATGATGATGGTGGTGGTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGAGTGAGT--------GAGGGAGCT
TGTCAATTTGTTGGTGGGATTCAGGCATGGC-----GATAATGTTAGCTAGCATGGTCCCCTCGCTCATGCTCGCCCG--
--ATTCAGTCAAGCCAATCAGTAGACCAAATGTTCGCTTAATCTCCCAGCTGGGCCTGAC--------------------
----------------------CCGTCGCCGTCCGCCGTCGGCCATGCACCGCTGCCATGCAGATGCAGGGCTCACTCTA
GAATG-AAGGAAGAAAGAAAGAAAGAAGATTCAACGCACTGTGTTTGTATATCCTTTTTCTTTTACTGG---TACTCTAG
CAGGTTTGT--TACTGCATGGTAAGTAGTTTCACCGCGCGGTATGGACGACGCGTGCATGGACGTACGGGACACATGCGC
GGCACGTGCGAGATTCCCGTTGGCTGCGAACTGGTTTTTCGATTCACCAAGGGCCATGCAAATATATGTATG------TG
TATATACGCGCCCGGCGTACGGACTGTCTCTCACTGTAATTTTTTACTGTTATTAATATTTGTGGTACG-TACAAACTTA
GGTTCCAAGTTCCAACTACCTAGTAGGAGT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-SS-S------
-----S-SS--------------------------------------------S--------------S------S----
-----------------------------------------------------------S---------S----------
--------S--S-SS--SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S-SS--S-S----------
----S---SSS-SSS--------------SSSSSSSSS-----S---S-----------------------S-SS-----
SSSSSS-S-SSS-S-SS--------------------------------------------SS-S--SS-S---------
-----------------S---------------S------SS------------------------S----------SSS
---------------S------------------------S-----------------S--S----S-S----SS-----
---------------------------------------SSSS----------SSS-S-SSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------SSSSSSSSSSSS------
---------------SSSSSS--------------------------------------SS-SSSS--------------
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--------------------------S-----------SSSSSSSSSSSSS-----------------------------
--------------------------------------------S--------------SS-S-----S-----------
-----S-----S---SSS-S-SSSSSSSSSSSS-----------------------------------------------
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------------------------------------------------S-----------SSSSSS--------------
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------------------------------------------------------------------SS--S-----SSS-
SS-------------------------------------S---------S--SSS-------------S-----------
---------------------------------------------------S----------------------------
S-------------SS-SS----------------------------------------SSSS-S---------------
---S-----------S------------------------S-------S--S----------------------------
------------SSSS---------------------------------------SSSSSSSSSSSSSSSSS--S--SSS
--SS-----------------SSSS-----------------------------------SS-SS---------------
----------------S-------------------SS---S--------------------------------------
---S---------S-----------------------------SS--------S--------------------------
----------SSS----------------------------------------------------S--------------
-----------S----SSSSSS----S-S---------S------------S-------S--------------------
------------SS-----------S-----------S-------------------------------------SS-SS
-----S--------------------------------------------------------------------------
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---------------------------------------------------------SSS--------------------
------------------------------------------------S----------------------------SSS
SS--------------------------------S----SS-SS-S-SSSSS----------------------------
---------------------------------------------------S----------------------------
-----------------S-----------------------------S----------S-----SSSS-SSS--------
------S-------------------------------------------------------------------------
-------------------------------------------------------------------S-S-SSSSSSS--
-------------S------------S-------------------SSS-------S-----------------------
------------------------------S
>forward_333
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-------------------------------------------------------------------------GTACTGC
GTGTAGTACCGGG-------------------------------------------------------------------
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>reverse_2400
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-------------------------------------------------------------------------------T
GCAACACAAGTGATGCAGC-------------------------------------------------------------
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