>input_sequence_70477
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-----------------------------------------------------------ACCTCTCTTCTGCCTTCCCTC
CCAATGGGGCGCCGCCGCCATGTCGTCGTCGTCCTCCTCCTCCTGCTCCTCTTGCAGCTGGTTCCCCGGATCCTCGCCTC
CACCGCCGCCACCCACGGCAATG-----CAGAGGCCGCCATTACCAAGGTGCGTATGTAGTACGCTTAATCATG-CATGC
TAGCTAGTAGTAGAC-----TGATCGAC------CGTGTATGGATTTGCAGGAGGAAGGGGGCAGCGTGGGGGCCATGAT
GCAGCAGACGCTGGGTTCCCGGCCGCCGAGCTGCGAGGGGCAGTGCCAGTGGGCGTGCGGCGGCCGCCGGTGCGAGGCCG
TGCAGGTGCCCGTCGCTCCGCGCGACCTGGGGCAGCAGCTGAAGAATAGGAAGAAGGAGAAGCGGGCATCGCCGGCGGCA
GGGCGAGGAGGGGGCGCGCTGCTGCCGTCCTCGTACGACGAGCACTCCAACTACAAGCCGCTCGGCTGGAGATGCAAGTG
CCTCCACTCCTAGGCCTG----GCTAGCTTAATATCAATCACGCCATGGATTCTAAGCTACCTTCTACGTAGTGTCAGTA
TATATGAATCTGAAGCTTCGTTCGTTGTAGTATTGTACGTACATGGGATCTGCAAACCTTGCTTCTGTGCTCTGCTCTTT
CTTGTGTTCGTGTGATGAAAGATTAATTTCTAGGGCAGAC----------------------------------------
-------------CGTCTCTTTTGCTGCACTTTTAAGTTTCAACTAGCCAGCCAGTATATTG------------------
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>chr5A_1_TraesCS5A01G013000
CCTGGATCACATTCGGTGAGAAAATCACGTTCCCGGAGATTTTATTCCGTTTGGACTCCGTTTGATATTCCGTTTCTTCG
AAACACTGAAATAGGCAAAAAACATCAATTCTGGGCTAGGCCTCCAGTTAATAGGGTAATCCCAAAAATAATATAAAAAT
GAAAAATAAAGCCCAATATAGTCCAAAAGAGTAGATAATATAGCATGGAGCAATCAAAAATTATAGATACGTTGGAGACA
TATCAACCCCCCTACCTGAGATCCGCTGGTTTTGACACTGACTGTAGAAAACATCTCTACCGCCAAATGGGCTGGCGGTA
GTCTGCACAATCCTACCGCTAAGGAGCTTAGCGGTAGGCACGAGCGCGCACTGTGTTCAATACTTAGGCAGATTTTACCG
GTAGGGCATGCAACCCTACCGCCAGGGTCCTTGGCGGTAGGCTGTTATACCCTACCGCCATGGTCCCTGGCGGTAGCAAA
AGGATCAGATCTCGAAAAAAATTCAAATTAGGGTCAGATCTCGAATAGGTTTGAAAAATGATCAAAACACGGAATTTAGC
CCCCTAGATATGGGAGTACCAGATATTTCTCCCGTACTTCCAAATGTGGTCTATAAAATTCTATTTAAGCCTCATTTTTC
AAAGTTAAATTCCTAAATTAGTTTGTCATTATCTATCCGCAACCATGGTGGGGCTAGATGCCCCTTGGTGTAGTAGGTAG
T----------GCACTAGTCCGTGTCATCTCAAGGTCCAGTCCGGTCCGGTCGATGGATCACCCGGAGATCGATCGAGCA
AGAGCCAGTACTAGCATACA----CATGCATGCATGCATGCATGCGGTAGGCTTTTTCCCTAGCTCCATGTAGCTGCGCC
AGTGAAGTGACACGACGCATGCAGCGTGGAAAGACGAGCAGCCAAAGCT-AGCTGGAGCCTGGAGCAGTACACATATCTA
GTGCAGGTGGTGCAGGCAGCAGGGCCTCTGC----TCGTCCTCCACTCTGCTTCACTTCACCTCTCTTCTGCCTTCCCTC
CCAATGGGGCGCCGCCGCCATGTCGTCGTCGTCCTCCTCCTCCTGCTCCTCTTGCAGCTGGTTCCCCGGATCCTCGCCTC
CACCGCCGCCACCCACGGCAATG-----CAGAGGCCGCCATTACCAAGGTGCGTATGTAGTACGCTTAATCATG-CATGC
TAGCTAGTAGTAGAC-----TGATCGAC------CGTGTATGGATTTGCAGGAGGAAGGGGGCAGCGTGGGGGCCATGAT
GCAGCAGACGCTGGGTTCCCGGCCGCCGAGCTGCGAGGGGCAGTGCCAGTGGGCGTGCGGCGGCCGCCGGTGCGAGGCCG
TGCAGGTGCCCGTCGCTCCGCGCGACCTGGGGCAGCAGCTGAAGAATAGGAAGAAGGAGAAGCGGGCATCGCCGGCGGCA
GGGCGAGGAGGGGGCGCGCTGCTGCCGTCCTCGTACGACGAGCACTCCAACTACAAGCCGCTCGGCTGGAGATGCAAGTG
CCTCCACTCCTAGGCCTG----GCTAGCTTAATATCAATCACGCCATGGATTCTAAGCTACCTTCTACGTAGTGTCAGTA
TATATGAATCTGAAGCTTCGTTCGTTGTAGTATTGTACGTACATGGGATCTGCAAACCTTGCTTCTGTGCTCTGCTCTTT
CTTGTGTTCGTGTGATGAAAGATTAATTTCTAGGGCAGAC----------------------------------------
-------------CGTCTCTTTTGCTGCACTTTTAAGTTTCAACTAGCCAGCCAGTATATTGACTCTTCACGCTTCGAGT
CATGCACATGCACGTATGCTACTACTCAGCCAGTATATTGACTTTTTAAGTTTCAAAGATGAATGCGAGTAATAATCTAC
ATGCATGCGTTCTTTTATTTTTTACAAGTGCTGCATGCATGTGTTGATGAG--TACACAACTAGTGCCGATAAAGGTTTT
CAAAAAA----------------------------GAAAAATGCCGATAAAAGTAGAATTAGGCATGTGTATAAA-----
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-------------------------------------------AAAAAGGATAAATCAACATGCAGTGCTGTTGCAAACT
TTGGTGCTACTGCAAGAGCAAGACGATTCGGTCCAACCTCGCTGCTTCCTGCTTGTATCTTCTGCCGGACAGTCGGCAGA
TATAAACGCTGTGACGGGACAAGCCAGAGACAGTGAGCTCGACACACGGCATCGTTCCCGTCCGTCCGCGCCCCGAGGAA
TTGTTGTCATGTCCAATCCAATGAAAGAAAGCAATGAAAGAAAGCAATGGTGACCTGCCTTTAACTCCACTGCAAAAGCG
GCCAGGAACCACTGGGCAGAGATACTCTCGTTTGTAATGCACCGCGGGCTGGTCCGTGCAGTGCATCTACTTGAGCTTGA
ACGGAGCAGCAGCTGG-----------------ATTGGCCGGTCGATCGACGGCTAGCTGTTGTGCTGCCATGTGTGTTA
GCTAGCCTGGCCTC-CATGGACAGATCATCACAGTGCCGTGCCAGATGGAGCCATCTGTAGGTCACGCGTGCGCACCAGG
TGCAAGCAAGCAAGCTGCAGTACTGCCTCCATGCACGGTACAGAGGAGAGAAGTGTACTCCTCCGTTGTTGACGGGCGAA
GAGAAGAGGAGGGGGATGTGTCACCCTGCATGTCCCATGGCGTACGTGATCAGCCGAGCTAGT-----------------
------------------------------------------------------------------------------CT
GCATGCGTGTCCCGTCAAATTAACAGAAGGTCCGTACTGCCTACTGTCTATATATACGTACATTGATGAACCTGCAGGGG
TGTAAACTCATTTGGCTGGTCAGGTCGCACACTGCAGTGATCCAGGATAGTCC
>chr5D_594
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---------------------------------GTACTTCCAAATGTGGTGTATAAAATTCTATTTAGACCTCGTTTTGC
AAAGTT-AATTCCTAAATTAGTTTGTCATTATCCATCCACAACTATCGTGGGGCTAGATGCCCCTTGGTGTAGTAGGTAG
TACTAGGTAGCGCACTAGTCCGTGTCATCTCAAGGTCCGGTCCGGTCC-----ATGAAGCACCCGGAGATCGATCGAGCA
AGAGCCAGTACTAGTATACACATGCATGCATGCATGCATGCATGCGGTAGGCTTTTTCCGTAGCTCCATGTAGCCGCGCC
AGTGAAGTGA--CGACGCATGCAGCGTGGAAAGACGAGCAGCCAAAGCT-AGCTGGAGGCTGGACCAGTACACATATCCA
GTGCAGGTGGTGCAGGCAG---GTCCTCTGC----TCGTCCTCCACTCCGCTTCACTTCACCTCTCTTCTGCCTTCCCTC
CCAATGGGACGCCGCCGCCATGTCGTCCTCCTCCTCCTCCTCCTGCTCCTCTTGCAGCTGGTTCCCCGGATCCTCGCCTC
CACCGCCGCCACCCACGGCAATG-----GAGAGGCCGCCATTACCAAGGTGCGTACGTAGTACGCGTAATCATG-CATGC
TAGCTGGTAGTATAC-----TGATCGACCTGGACCGTGTATGGATTTGCAGGAGGAAGGGGGCAGCGTGGGGGCGATGAT
GAGGCAGACGCTGGGTTCCCGGCCGCCGAGCTGCGAGGGGCAGTGCCAGTGGGCGTGCGGCGGCCGCCGGTGCGAGGCCG
TGCAGGTTCCCGTCACTCCGCGCGACCTGGAACAGCAGCTGAAGAA---GAAGAAGGAGAAGCGGACATCGTTGGCGGCA
GGACGAGGAGGGGGCGTGCTGTTGCCGTCCTCGTACGACGAGCACTCAAACTACAAGCCGCTCGGCTGGAGATGCAAGTG
CCTCCACTCCTAGTCCTA----GCAAGCTTGAAATCGATCACGCCATGGATCCTAAGCTACCTTCTAGTG-GTGTCAATA
TATATGAATCTGAAGCTTCGTTCGTTGTAGTATT----GTACATGGGATCTGCAAGCCTTGCTTTTGTGCTCTGCTCTTT
CTTGTGTTCGTGTGATTAAAGTTCAATTTCTGGGCAGAAAACACGTACTCTTTAGAACTCGTTTACATTTTAGCTAGTAG
TAAATGAGTAGTACGTTTCTTTTGCTGCACTTTTAA-------CTAGTCAGCCTGTCTCTTGACTCTTCACGCTTCGGCT
CATGCAGATGCAGTCATGCC------------------------------------------------------------
---------TTCATTTATTTTTTGCAAGTGCTGCTTGCATGTGTTGATGTGTATACACAACTAGTGCCGATAAAGGTTGT
TTCAATTTATTTATTTTGCCTATAAAGGTTGTTTCGAAAAATACCGATAAAGGTAGAATTTGGCGCGTAAAAAAAGGGTA
ATCAATATACAGTGCTATTGTAAATTTTGGTGTTACTGCAAAAGCAAGACGATTCGGTCCCGTCCTCGCTGCTTGTATCT
TCTGTCGGACGGTCAGCGGATATAAACGCTGTGACGGGACAATCTAGAGACAGTGAGCTCGACACACGGCATCGTTCCCG
TCCGCGCCCCGAGGAATTGTTGTCACGTCCAATCCAATGAAAGAGGCAAATGCCCGCTCTCTCGGCTGCGATTCAACGCC
AAAAGATGCGCCGGAATGGAGCCACGGAACAACGGCCGCTGACAATTGAGATGGTGATGGACCAACACGGTAGTCAAGAT
CTCCTCTTCATCATCGGACGAGGAATCATCGGAGTCAGAAAGAAAATTGTGAAAAAAAAACTCGTCGACGGAGTACATTT
TATACCTTGCCAAACTGTCGAACAGTTTGCGGGCGTCGACGAAGGAGCCGGCCGGCGAAGGGAGTCGCGCCGCCCTCGGA
CGAGCTAGCTGCCCTGGCGACGCCCGACGAGCGTGTTGGTGTCAGGACGAAGGACCTGACCGGGGCGGCGAGGTGGCTTC
TTGGTCGTGTTGTGTCAGGGAGTGGGGGTGGGAAACTTTCGAATCCCCGGTGGCAAGACGGCGATGGCGACGACGTGGGA
GCTGGCGGTGTTGCAGGAGGGGATATCGTGGCACCGGCAGCTGGCAGAGGCACCGGAAAAATGGGCGGTGGCGGCGGCAA
CGAAGGAGGCAGGTGAGGGTTTGCTATTGGAACGGAAGAGGATGGCCAATGTGCCACCGACCAGCGGGTCAGGGGGAGGG
CGGGCGCGCGCACGTCCGTCTCGTGTCGCGCCGACACAAATCTGGCTCAAAAATGGACTGAAAATGGGTCGGAAGGCGAC
GAAAAGCGGACGCGCGTCCGTTTGAGTCAGCGCGTTGGGCCAACTTTTTCAGTCCGCGCCGACCCAAACAGACGCGCGTG
GACAGAATGAATCGTCGCGTTGGAGTTGCTTTTAGGCACGTAGAAAAAGGGTAAATGAACATGCAGTACTGTTTCAAATT
TCGGTGTTACTGCGAGAGCAAGACGATTCGGTCCAACCTCGC-------TGCTTGTATCTTCTGTCGGACAGTCAGCAGA
TATAAACGCTGTGACGGGACAAGCTAGAGACAGTGAGCTCGACACACGGCATCGTTCCCGTCCGTCCGCGCCCCGAGGAA
TTGCTGTCACGTCCAATCCAATGAAAGAAAGCTATGG----------TGGTGACCTGCCTTTAACTCCACTGCAAAAGCG
GCCAGGAGCCACTGGGCAGAGATACTCTTGTTTGTAATGCACTGCGGGCCGGTCCGTGCAGTGCATCTGCTCGAGCTTGA
ACGGAGCGGCTAGGGCTCTGCGCTGCTGGATATATTGGCCGGTCGACCGACGGCTAGCTGTTGTGCTGCCATGTGGGTTA
GCTAACCCTAGCATTCATGGACAGATCATCACGGTGCCGTGCCAGATGGAGTCAT-------------------------
--------------------------CTCCATGCACAATGCAGAGGAGAGAAGTGTA---CTCCGTTGTTGACGGGCGAA
GGG--------------------CCCTGCATGTCCCATGGCGTACGTGATCAGCCGAGCTAGTCCCGCGCATGTGCTCCA
GTCGACCTGCACTGGCCTGGGCCTGGCTAGCTGCAGGACTTACGACCGATCGTCTCGTCAAGTCTAGTCTGCTCTGCTCT
GCATGCGTGTCCCGTCAAATTAACAAAAGGTCCGTACTGCCTACTGTCTATATATACCTACATTGATGAAC---------
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>chr5B_594
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---------------------------------GTACTTCCAAATGTGGTGTATAAAATCCTATCTAGGCCTCATTTTGC
AAAGTTGAATTCCTAGATTAGTTTGTCATTATCTATCCGCAACCATGGTGGGGCTAGATGCCCCTTGGTGTAGTAGGTAG
TAGT-------GCACTAGTCCGTGTCATCTCAAGGTCCGGTCCGGTC-----GATGGAGCACCTCGAGATTGATAGAGAA
AGAGCCAGTAGTATAGA-----------CATGCATGCATGCATGCGGTAGGCTTTTTCCGTAGCGCCATGTAGCTGTGCC
GATGAAGTGACACGACGCATGCAGCGTGGAAAGACGAGCAGCCAAAGCTGAGCTGGAGGCTGGAGCAGTACACATATCTA
GTGCAGGTGGTGCAGGCAG---GGCCTCTGCATCGTCGTCCTCCACTCTGCTTCACTTCACCTCTCTTCTGCCTTCCCTC
CCAATGGGACGCCGCCGCCATGTCGCCG---------TCCTCCTCCTCCTCTTGCAGCTGGTTCCCCTGATCCTCGCC--
-------GCCAGCCACGGCAATGCCACCGAGGTGCCGCCGCCACCGAGGTGCGTACATAGTACTCTACGCGTAATCATGC
TAGCTGGTAGTAGTATATAGTGATCGAT------CTTGTATGGGTTTGCAGGAGGAGAGGGGCAGCGTGGGGGCGATGAT
GCGGCAGACGCTGGGGTCCCGGCCGCCGAGCTGCGAGGGGCAGTGCCGGTGGGCGTGCGGCGGCCGCCGGTGCGAGGCCG
TGCAGGTGCCCGTCACTCCGCGCGACCTGGAGCAGCAGCTGAAGAA---GAGGAAGGAGAAGAGGAGATCGCCGGCAGCA
GGGCCAGGAGGGGGCGCGCTGCTGCCGTCGTCGTACGACGAGCACTCCAACTACAAGCCGCTCGGCTGGAGATGCAAGTG
CCTCCACTCCTAGGCCTAGCTCGCTAGCTTG--ATCGACCACGCCATGGATCCTAAGCT---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S----------------S----------S-
------S-------------------------------------------------------------------------
--------------------------------------S---------SSSS------S---------------------
--------------S--------------------------------------------S--------------------
----------------------------------------------------------S---------------------
-------------------SSS----------------------------------------------------------
--------S---------------------S-------------------------------------------------
----------------------------S--------------------------S------------------------
-----S--------------------------------------------------------------------S-----
--S-----------------------------------------------------------------------------
--------------S---------------S---------------SSS----------------S--------------
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-----------------S------------S-S---S--------------S---------------SSSS------S--
----------------------------------SSSS-----------------S--------S---------------
----------------S----S-S-------S--SSSS-S----------------------------------------
----------------S-------------------SSSSSSS----S-----S--S-S------------------SS-
------S-----SSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---S----------S----------S--------------S----------------------------S-
SSS--SS-----------------------------------S--------S--------S---SS--SS-S--------
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--------------------------------------------------S-----S----------S-----S----S-
-S----S------S----------------------------SSSSSSS---------------S---------S-----
------------------------S-------------------------------------------------------
---S-----S----------------------S---SSSSSSSSSSS---------------------------------
-------S--------------------S-------------S------S------------------S--S--------
-------S--SSSS-S------------------------------S----------------------------S----
----S--SSSS-SS------------------S------------------S---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----------SS-S-----------------SSS--------------------
-S-SSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
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-------------------------S-------------------------------S-------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_452
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--------------------------------GGCGGTAGGCTGTTATACCC----------------------------
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>reverse_1712
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-------------------------------AGGGCAGACCGTCTCTTTTG-----------------------------
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>forward_1408
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----------------------------GGGGCAGCAGCTGAAGAATA--------------------------------
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>reverse_3429
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--------------------------------------------------------------------ACTTGAGCTTGA
ACGGAGCA------------------------------------------------------------------------
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