>input_sequence_70462
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-ATGGCTCCGA---GTT---CCTGGTTCCTCACCTTAATCTGGGTTTGGTGGCTGCCACTGGTGCTCGTGGAGGCTCAGG
AGCAGCAAGGAGAAGTCTGCTCGGCCAAGTGCGGCGACGTTAGGATCTCAAATCCATTCTGGTTCACTGACTTGGAGACG
GGAAGATCATGTGGTCCGCCTGGATCGCCGGACTTCCAGCTTACATGCCTTAACAAC--AG---TTATCCATTTTTACCG
AGCTCCGTGCGCTTCACCCCTGGCTTTGCAATCCTCAATATCTCCTACGGGAAACGCAGCTTGCACGTCATTGATCTGGG
CAAGCTGCAACTATTACACGACCCGCCCAAGATCTTCAACCACTGCGCTCCGATCTGGAACACCTCTGTCAAACTGGCGC
CCCCGTTTAAGATCGGCCCCGTCAACCTGGAACTCATCTTGTACAACTGCACGGC---G---GCTGCTGCGGCA------
CGCCGGGGAAATGAACTGGTGCTGGCGAAGACGATGAGGTGCGTGAACACGAGCAACACGTTTGTTCGCGCAGGAGTACC
ACACGACCCCACCGGGAAATACTCGAGTTATGCTTTGGAGGGCTGCACTCCAATCGTCTTGCCGGTGCTGGGCTTGCCGT
CCGGCGAG-----------------ACA------AACGCGAGCCAGTACGAGGAGCTCATCAAGGATGGCTTCCTATTGA
CATGGGATGAAG---CTCCTCGGCCTGCACGTAAGTTCACCC-GTCAAATCATCTTTTAA--------------------
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>chr3B_1_TraesCS3B01G049500
ATAAAAATAAATATAAAACTGATACAGAAAGGAAAATTAGAAAAAATAAAAAGCCACCTAAAAAA--AGGGAAGCAT-AA
AAATAGAAAACTAGAGAAAATTCTAATAAAAAGAAAAGAAAAGAACGAAACATAAAACTGACCAAACCAGGAGATGTGCT
CGATCCAATTATGCGTCCTCTTTTGTGTTATGCTGACATGTTAATGGGCGTCAAATAGGGTTTGTCAGCGTAGCCTGCAA
ACCTTGTTTTGGGTCCGAGCCCCTTAGTTGTGGGCCACCTGGGCAGATACATAAACCCGCATCCTCGCTCGTAGTTTTAT
CCGAGTGTCATCTTTGAGTTTTATTTGAGGCCCGTTTCACTGGATAGTTGGTTTCTTAACGGGTTTAAAAAGTT-GTGGC
GGTTTCTGTAATTAAAATCGATGAGAAGACTTGCTGCTTAAAAAAAACAATATTAAAAAGACGGCGTAAAGAATTAGTTC
AGAAATGGTTTTGATGCTTTCAAGTCCTTGGAG-AAACCACTAGTCGCATGG----------------TACAAAAGCTAA
AATGACGCAAAGTAAAATGTGTGAACTCTAGGTTTGAACA---GACGTCTCCCCTGCAAAGACAGGAAAATTGCACTCAA
TTTCTACAATGCGCAACCCCAATAGCCAATCAGTG----------------TACGGATAGTTACTGC--CTGTCAAGTGT
GAATGCCGTAGAACAAGAGCATGAAGTGCCCGGAACCGACAGACCCAGCG--------AAGCATCCTGGTTTAAGGTCAC
ATCACGGGGTCTCTCAGGTCATGGTCATG---------------------------------------------------
GCTTTCCAGTCTAAGGGGTCAGTCAATTGGGGAATTTCGTGGAGGACGATCGCTTGGAGAAACTTTCCAGTCAAATGTTC
CGGCTAACAGTACTCCGCTGGCTTGCCGTCCCCTTATATTGATGGTG-----CTTCGACCACGGTATTT-CTCTCTTACG
TGTAGCCGACCACCACAACCCCCTTTGGCA--------------TTGCTCGCTGCAATCTTTCCAAATCCCTTCTACTCC
GATGGCTCCGA---GTT---CCTGGTTCCTCACCTTAATCTGGGTTTGGTGGCTGCCACTGGTGCTCGTGGAGGCTCAGG
AGCAGCAAGGAGAAGTCTGCTCGGCCAAGTGCGGCGACGTTAGGATCTCAAATCCATTCTGGTTCACTGACTTGGAGACG
GGAAGATCATGTGGTCCGCCTGGATCGCCGGACTTCCAGCTTACATGCCTTAACAAC--AG---TTATCCATTTTTACCG
AGCTCCGTGCGCTTCACCCCTGGCTTTGCAATCCTCAATATCTCCTACGGGAAACGCAGCTTGCACGTCATTGATCTGGG
CAAGCTGCAACTATTACACGACCCGCCCAAGATCTTCAACCACTGCGCTCCGATCTGGAACACCTCTGTCAAACTGGCGC
CCCCGTTTAAGATCGGCCCCGTCAACCTGGAACTCATCTTGTACAACTGCACGGC---G---GCTGCTGCGGCA------
CGCCGGGGAAATGAACTGGTGCTGGCGAAGACGATGAGGTGCGTGAACACGAGCAACACGTTTGTTCGCGCAGGAGTACC
ACACGACCCCACCGGGAAATACTCGAGTTATGCTTTGGAGGGCTGCACTCCAATCGTCTTGCCGGTGCTGGGCTTGCCGT
CCGGCGAG-----------------ACA------AACGCGAGCCAGTACGAGGAGCTCATCAAGGATGGCTTCCTATTGA
CATGGGATGAAG---CTCCTCGGCCTGCACGTAAGTTCACCC-GTCAAATCATCTTTTAATCTGGTTCGGCTAGCCACAG
TGCATAATTTGCCAGGATTTCCCTAATCAAACCAAGCAA-CAATCATGTTAGTACTTTTG--------------------
------------------------------GGTTCAGAACAAAGTCTACTGCCAGAACTTCTGCCTTGTCCCACGGTGAC
TGAACTCTGAACTCCTCAACTCTGCACCACGGCAAAAAATTTTGTTAAGAGAGATGTGCACCACTGACGATAT-------
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--------------------------------------TTTTTATTAAATTACATAAACGTCTAAGCAAGAGCACAAAAT
ATCCTGGTCCTGGTTCCAGGTTTTCAGCAGTCACTTCGCGGGCAAACCAAGGTCATGGGGTCATGGCATACCTTAACTGC
AGATTTGA-TAAGTCATGGCTTACTAGTCCATGGGGTCTCCATTGGGAAACTTCCTGGACAATGATCTCTTGGCAAGAAT
TTCCAGTCAAATGTTCAATACTAGTCCGCTCGTTCGCCGTCCCCATGCATATATGTGGTTCAAGCTTCGACCACTGTATT
CTCTCTTACGTGTAGTCTCTACCTTCCCA-----ATAGCCCATGTCCACCGAATCCAGCCACCCACCTCTGCTGTTCACC
ATAATCTCTCCCAATATTTGTGCTCCGATGTCTCCCAGCTGCTGCTGGTTCTTGGTCTTCGTCGCGGTGTGGTGGCTGCC
ACTGATGCTCGTG--GTGGCTGAGGACCAGCAGCGGAGAGACTGCTCGGCCAAGAAGTGCGGCAACGTCAGCATCTCTGA
TCCGTTCTGGCTCGCGACGAAAGAGCTTGAGAGACCATGCGGTTCCTT---------GGATTTCGAGGTCACCTGCAATG
GTACCATCAGCAG---TCTACGGAGCTCTATACCCTTCAACAACGGCTTCAAAATCCTCAACATCTCTTACGAGGAACAC
AGCTTGTATGCCATTGATCTGGGCAAGCTGGACGTGTTGCATGCCAACAACAGCTGCCGTCCGCCGTTCCCGTTCTATAA
CACCTCAAGCAAGCTGAACCATCTGTTTAGGATCGATCCCGTCAACCTGAACCTCA
>chr3D_1
ATAAAAATAAATATAAAACTGATACCAAAAGGAAAATTAGAAAAATAAAAAAACCACCTAAAAAACATGGGAAACA--AA
AAACAGAAAACTAGAGAAGATTCCAAAAAAAGAAG-----AAGAACAAAACATAGAAATGACTGACCCAGGAGATGTGCT
AGGCCCAATTATGCGTCCTCGTTTGTGTTATGCCGACATTTTAGTGGGCGTCAAATAGGGTTTGTCAGCGTAGCCGGCAA
ACCTTGTTTTGGGTCTTAGCCCCTTAGTGGCGGGCCACCTGGGCAAATACATAAACCCGCAACCTCGCTCGTACTTTTAT
CCGAGTGTCATCTTTGACTCTTATTTGAGGCGCGTTGCACTGGATAGTTGGTTTCTTATCAGGTTTAAAAAGTTAGTGGT
TGTTTCCATAATGAAAATCGTTGAGAAGGCTAA------------------ATTAAAAAGACGCTGTAAAGAATCAGTTT
GGAAATTCATTTGATGCTTTCAAGTCCTTGGAG-AAACCACTATTTAGAACTTTGCCAAGTTGCACGTTACAAAAGCTAA
AATGACGCAAAGTAAAATGTGTGAACTCAAGCTTTGAACA---GACGTCTCCCCTGCAAAGACCGGAAAATTGCACTCAA
TTTCTAAAATGCGCAGCCCCAATAGCCAATCAGTGCAAGGATCTTCCTTCCTACTGATAGTTA---CCGCTGTCAAGTGT
GAATGCCGTAGAACAAGCGCATGGAGTATCCGGAACCGACAGAACCAGCGTACCTAATAAGCATCCTGGTTCAAG-TCAC
ATCACGGGG----TCAGGTCATGGTCATGGCTTAGGGACAAAATGGGTAGCTCTCAAGGCCTCAGGTTTTAAAGGTCATG
GCTTTCCGGTCTAAGGGGTCAGTCAATTGGGGAATTTCGTGGAGGACGATCGCCTGAAGAAACTTTCCAGTCAAATGTTC
CGGCTAATAGTACTCCGCTCGCTTGCCGTCCCCTTATATGGTCCATG-----CTTCGACCACGGTATTTTCTCTCTTATG
TGTAGCCGACCACCACAACCCCCTTTGGCA--------------CCGCTCGCTGCAATCTTTCCAAATCCCTTCTACTCC
GATGCCGCCGA---GCT---CCTGGTTCCTCACCTTAATCTGGGTGTGGTGTCTGCCACTGATGCTCGTGGAGGCCGAGG
AGCAGCAAGGAGAAGTCTGCTCGGCCAAGTGCGGCGATGTTAGGATCTCAAATCCATTCTGGTTCACTGACTTCGAGACC
GGAAGATCATGTGGTTCGCCTGGTTCCCCGGGCTTCCAGCTTACATGCTTCAACAAC--AGCTATTTTCCATTTCTACCG
AGCTTTGTGCCCGACAGCCCTGGCTTTGCAATCATGAACATATCTTATGGGGAACGCAGCTTGCGCGTCGTTGATCTGGG
CAAGCTGCAACTATTACATGACCAGCCCGAGATCTTCAACCGCTGCCTTCCGATCTGGAACACCTCTGTCAAACTGGGCC
CCTCGTTTAAGATCTCCCCCGTCAACCTGGAACTCATCTTGTACAACTGCACGGAGAAGGCTGCGGCAGCGGCA------
CGCCGGGAAAAAGAACTGGTGCAGACAAAGACGATGAGGTGCGTGAACACGAGCAACACGTTTGTTCGTGCGGGAGTGCC
ATACGACCCCACCGGGAACTACTCCGGTTATGCTTTGGAGGACTGCGCTCCAATCGTCTTGCCGGTG------TTGCCGT
CCGGCGAG-----------------ACG------AACGCGAGCCACTACGAGCGGCTCATCCAAAGTGGCTTCCTCCTGA
AATGGGAACTGCCC---------CCTCCAGGTAAGTTCACCCAGTCAAATCATCTTTTATTCTAGTTCGGCTAGCCGCAG
TCCCTAATTTGCTTGAATTTCCCTAACCGAACCAAGCAATCAATCATGTTAGCTTAGTGCTCTCACTAGGTACGTCATTA
GTTTTT--------------------------------------------------------------------------
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---------TTTTTTTTACGAATGCTCGTTAGTGGGGCCTATGGTTTTTTAGCAACTGCGCCTATGTGGTACACTTCTAT
ACTTT--AAAAAAAATGTCATTTTAATGCAATGACTTCAGTGACTTATAAAAAGTGATTTTAATACGTCAAGAGAATATG
TTGAATGTTCATGTAAAATATTTTTGTTTCATAGTAAAACTAA--TTTTATAATAATTAAAGAAAGTCCATATATTTGAA
AATAAC----------TACAAGAAAAATGGTCATGTATGTCAAAAGCGATGTTCCTGTATTTCAGAACAAATATTCATGT
TGAAAAAAAG--TTCAAGACTTTGAAAATAAGTGTAAATATAATATATATTTACGACAAAAGTATAGTAAAAATTCAAAT
AAATATAATTATAAATAAATTCACATCATAAGCCAGTAATTTGAAAAAAAATGGAACTAAAAAAGTGAAGAAATTAGACA
ATAACAAAAA-ATCAAAACAAAAAGGCCAAAAAAGTAAAATTATAAATATGAAAACAAAAGGTAAGTAAAAATGATTAAT
ATGAAAACAAAATCCACTTTAAGTGATTTGGATCAAGAAGACCATAATCGTTCTACAGTTTTGCTATCTCTAAGTTGGCT
GAGAAGTTGGTTTCCGTACGCTGGCCAGGTCACACATCACAAAGGCTAGCGTTGCCAAAAAAAAAAAGGTGCACTTCATG
TCTAGACGTAGAAATGTGCAAACAGAGGTTAGAAGTTTCTTTTATTAGATTAGATAAATGTCTAAAAAAGAGCACAAAAT
ATCCTGGCCCTGGTTCCGGTGACATCATGGGCGCCCGGA-------------------GGTCATGGCATACCTTACTTGC
AGATTTGA-TAAGTCATGGCTTACTAGTCTAC-----------TGGGAAACTTCCTGGATGATGATCGCTTGGCCCAAAT
TTCCAGTCATG--------------------------------------TATATGTGGTTCGTGCTTCGAGCACGGCACT
ATCTCTTATGC--GTAATCTACCTTCCCACAGCCATAGCCCATGACCAGTGAATCCAGGTACCACCCTTTGCTATCCACT
GCAATCTCCCCAAATC-TTTTGCTCGGATGTCTCCCAGCTGCTGTTGGTTCTTATTCTTCATCGGTGTGTGGTGGCTGCC
GCCGATGCTCGTGT--TGGCCGAGGACCAGCAGGGGGGAGACTGCTCGACCATGAAGTGCGGCAACGTCAGCATCCTTCA
TCCGTTTTCCCTCACCGACAGAGAGACGGGAAGATCATGCGGTCCTGATCCCTACCCGGACTTCGATGTCGCTTGTAACA
ACAAGAGTATTCCAGCTCTACGGAGCTCTATACCCCTGAACAATGGCTTTAGAATCCTCAACATCTCTTATGAGGAACGC
AGCTTCTATGCCATTGATCTGGGCAAGCTGGACGTGTTGAAATCCACCGACAAATGCAGTGCC------GTGTTCTATAA
CACCTCGGTCAAACTGAACCGCCCGTTCAGGATCGCCCCCGTCAACCGGAACCTCA
>chr3A_4
---AAAATAAATATAAAACTGATACAAAAAGGAAAATTAGAAAAAATAAATACCACCTAAAAACA--TGGGAAACAAGAA
AAACAGAAAACTAGAGGAAATTCCCAAAAAATGAAAAGAAAAGAACAAAACATAAAACTGACCGAACCAGGAGATGTGCT
AGACCCAATTATGCATCCTCTTTTGTGTTATGCCGACATTTTAATGGGCGTCGAATAGGGTTTGTCAGCATAGCCTGTGA
ACCTTGTTTTGGGT---------------------CACCTAGGCAAATACATAAACCCACATCCTCGCTCGTACTTTTAT
CCGAGTGTCATCTTTGAGTCTTATTTGAGGCTCGTTGCACTGGATAGTTGGTTTCTTAACAGGATTAAAAAGTTA-TGGC
GGTTTCTATAATGAAAATCCATGAGAAGGCTCGTTGCTT--AAAAATATATATTAGAAAGACGTTGTAAAGAATCAGTTT
GGAAATGGGTTTAATGCTTTCAAGTCCTTGGAAAAAACCACTATTTAGAACTTTGCCAAGTTGCACGTTACAGAGGCTAA
AATGACGCAAAGTAAAATGTGTGAGCTCTAGGTTTGAACGGACGACGTCTCCCCTGCACAGACAGGAAAATTGCACTCAA
TTTCTAAAATGCGCAACCCCAATAGCCAATCAGTACAAGGATCTTCATTCCTACGGATAGTTA---C--CTGTCAAGTGT
GAATGCCGTAGAACAAGAGCATGGAGTACCAGGAACCGACAGAACCAGCGTACCTAATAAGCATCCTGGTTCAAG-TCAC
AT-ACGGGGTCTCTCTGGTCATGGTCATGGCTTACGGGCCAAGGGGGTAACTCTCAAGGCCTCAGGTTTATAAGTCATT-
GCTTTCCAGTCTAAGGGGTCAGTCAATTGGGGAATTTCGTGGAGGACGATCGCTTGGAGAAACTTTCCAGTCAAATGTTC
TGT--------------CTTGCTTGTCGTCCCCTTATATGGTTCGTG-----CTTCGACCACGC--TATTCTATCTTACG
CGTAGCTAGCCTATCTCCCGTAGCCCAGTCATGCATCCCCTTTGGTGCGCACTGCAATCTTTGAAAT---CTTCTACGCC
CATGTCTCCGA---GCT---GCTGGTTCCTCGCCTTCGCCTGGGTTTGGTGGCTACCACTGGTGCTCGTGGCGGCTGAGG
AGCAGCAGGTGGAAGGCTGCTCGGCCAAGTGCGGCAACCTCACCATCTCCCACCCGTTCTGGCTCACTGATTGGGACACG
GGAAGATTATGTGGTTCACCTGGACCGCCGGAATTCGAGCTTACATGCTATAACAGC--AC---TTATCCACTTCTACCG
AGCTCCGTGCCCAACAACGCCGGCTTTGCAATCATGGACATGTCCTATGAGGAACGCAACTTGCGCGTCGTTGATCTGCG
CAAGCTGCAATTATTACATGACCCACCCAGCATCTTCAACAGCTGCTTGCCGATCTGGAACACCTCTGCCAAACTGGGCC
GCCAGTTTAAGATCTCCCCCGTCAACCTGGAACTCATCTTGTACAACTGCACGGAGAAGGCCGCGGCGACGGCA------
TGCCGGGAAAAAGAACTGGTGCAGGCGAAGACGATGAGGTGCGTGAACACGAGCAACACGTTTGTTCGCGCAGGAGTGCC
ATACGACCGCACCGGGAACTACTCCGGCTATGCTTTGGAGGGCTGCGATCCAATCGTCTTGCCGGTGCTGGGCTTGCCGT
CTGGCAAG-----------------ACG------AACGCGAGCCACTACGAGCGGCTCATCCAAAGTGGCTTCCTCCTGA
AATGGGAACTGCCCCCTCCTCATCCTCCAGGTAAGTTCACCCAGTCAAATCATCTTTTATTCTAGTTCGGCTAGCCGCAG
TCCCTAATTTGCTTGGATTTCCCTAATCGAAGCAAGCAATTAATCATGTTAGCTCAGTGCTCTCACTAGGTACGTCATTA
GGCATTCGTTAACCAGTTGAACTGGGGTATGGTTCAGAACAAAGTCCTCTGACAGAACTTGTCCCTAGTC--ACGATGAC
TGAACTCTGAACTGCTCGACTCTGCAGCACGGCCAACATAGGCATCGCGGGCTTGTTCACTCATCCTCTTGACAGCCCAG
TGGAAAACAGACTGTGAAACTTGGACTAGTGGGCCTATGTTTATTTTTCTTGGGCAATTTCGGCCTAACCACGGTGCTTT
GCTCATTAGTTTTTTTTAGCAACGCTTGTTAGTCGG-CCTATGGTTTTTTAGCAAGTGCGCCTATGTGGTACACTTCTAT
ATTTAAAAAAAATACTGTCTTTTTAATGCAAT---------GACTTATAAAAAGTCATTTTAATACATCAAGAGAATATG
TCGAATATTCATGTAAAATAATTTCGTTTCATATGTACACCTAATTTTTATACTAATTAAATAATGTCCATATATTTGAA
AATAGCTATTCATAATTATAAGAAAAATGGTCATGTATGTCAAAAGAGTTGTTCATACATTTCAGAACAAATATTCATGT
TGAAGAAAAGGGTTCAAGACTTCAAAAGGAAGTGTATATATAATATATATTTACTACAAAAGTGCAGT-AAAAATCAAAT
AAATATACATATAAATAAATTCATATAGTAAGTCAGTAATTTTAAAAATTGACCT----AAAAAGTGAAGAAATAAGCAA
ATAACAAAAATATCAAAAGTAAAAGGTGAAAAT-GTAAAATTATTAATATGAAAACAAAAGGTAAGTAAAAAGGATTAAT
ATGAAAACAAAACCCATTGTAAGTGATTTGAATAAAAAAGACCATGATCATTCTATGGATTTGCTATCTCT---------
---AAGTTGGTTTTCATACGCAGGCCAGGTCGCACATTATACA----------------------------------ATG
TCTAGATGTAGAAATGTGCAAGCGAAGGTTAGAAGTTCTTTTCATTAGATTAGATAAATGTCTAAAGAAGAGCACAAAAT
ATCCTGGTCCTGGTTCTAGTGATATCATGGGCTCACGGA-------------------GGTCATGGCATACCTTACCTAC
AGATTTGATTAAGTCATGGCTTACTAGTCCATGGTGTCT--ATTGGGAAACTTCCTGGACGATGATCGCTTGTCCCAAAT
TTCCAGTCAAATGACCAGTAATACTCTGCTCGTTCGAGGTCCCCAT--ATATATATGGTTCGTGCTTCCACCACGGCATT
ATCTCTTATACGTGTAGTCTACCTTCCCACAGCCATAGCCCCTGACCAGCAAATCCAGGTACCACCCTTTGCTATCCACT
GCAATCTCTCCAAATC-TTTTGCTCGGATGTCTCCCAGCTGCTGTTGGTTCTTATTCTTCATCGGTGTGTGGTGGCTGCC
GCCGATGCTCGTGT--TGGCCGAGGACCAGCAGGGGGGAGACTGCTCGACCATGAAGTGCGGCAACGTCAGCATCTTGCA
TCCGTTCTCGCTCACCGACAGAGAGACGGGAAGATCATGCGGTCCTGATCCCTACCCGGACTTCGATGTCGCTTGTATCA
ACAACAGTATTCCAGCTCTACGGAGCTCCATACCACTCAACCAGGGCTTTGAAATCCTCAATATCTCCTACAAGCAACGC
AGCTTCTATGCAGTTGATATGGGCAAGCTGGGCGTGTTGAACACCACCAACAAGTGCCGTGGG------GTGTTCTATAA
CACCTCAGTCAAACTGAACGGCCCGTTCAGGATCGCCTCCGTCAACCTGCACCTCA
>chr3D_775
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------------------------TCAAG---------------------------------------------------
GCTTTCCAGTCCGAGGG----GTCAATTGGGGAATTTCGTGGAGGACGATCGCTAGGCGAAACTTTCCAGTCAAATGTTC
CGGCTAATAGTACTCCACTTGCTTGCCGTTCCCTTATATGGTTCATGTCATGCTTCGACCATGGTATTTCCACTCTTGCC
TGTAGCCGACCACCATAACCCCCTTGGGTA--------------CTGCTCTCT------TTGCATAT---CTTCTTCTCC
GATGGTTCCCAGCTGCT---GCTGGTTCCTCGCCTTCGCCTGGGTTTGGTGGCTGCCGCTGGTGCTCGTGGCAGCTCAGG
AGCAGCAAAGCGTAGGCTGCTCGGCCATGTGCGGCGACGTCGCCGTCTCCGACCCGTTTTGGCTCACTGATTGGGCGACG
GGAAGATCATGCGGTTCGCCTGGACCCCCGGACTTCGAGCTGACATGCGTTAACAGC--AG---TTATCCAGTTCTACGG
AGCTTTGTGCCCTTCATCCCCGGCTTTTCAATCTCCAACATCTCGTACAAGGAACGGAGCTTACACGCCGTTGATCTGGG
CAAGCTGGAACTATTGCACGACGC---------CTCCAGTAGCTGCCTGCCGACCTGGAACACCTCCGTCAAACTGGGCC
GGCCGTTCAGGATCGACCCCATCAACCTCAACCTCATCTTCTATAACTGCACGGC---GGCGGCGGCGGCGGCG------
CGTCGGGACAGAGGGCTGGTGCACGCGACCACGATGAGGTGCGTGAACGCGAGCAACGCGTTTGTTGGCGCGGGGGTGCG
TTACGACGCCACCGGGAACTACTCTGCCTATGCTTTGGAGGGCTGCAATGCTATCGTCCTCCCGATGCGGCGCTCGTCGT
CGGGCGAG-----------------ACGTTCACCAACGCGACCGACTACGAGCAGCTCATCAAAGATGGCTTCCGCTTGA
CATGGGAT------------------------------------------------------------------------
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>chr3A_775
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------------------------TCAAG---------------------------------------------------
GCTTTCCAGCCCAGGGG----GTCAATTGGGGAATTTCGTGGAGGACGATCGCTAGGGGAAAATTTCCAGTCAAATGTTC
CGGCTAATAGTACTCCACTTGCTTGCCGTCCCCTTATATGGTTCATG-----CTTGGACCATGGTGTTTTCACTCTTACC
TGTAGCCGACCACCACAACCCTGCTC---A--------------CTGCAATCT------CTGCAAAT---CTTCTTCTCC
GATGGTTCCCG---GCT---GTTGGTTCCTCGCCTTCGCCTGGGTTTGGTGGCTGCCGCTGGTGCTCGTGGCGGCTCAGG
AGCAGCAAAGCCTAGGCTGCTCGGCCATGTGCGGCGACGTCGCCGTCTCCGACCCGTTTTGGCTCACTGATTGGGAGACG
GGAAGATCATGTGGTTCGCCTGGAGCCCTGGACTTCGAGCTGACATGCGTTAAACAGCAAG---TTATCCAGTTCTGCGG
AGCTTTGTGCCCTTCATCCCCGGCTTTTCAATCTCCAACATCTCGTACAAGGAACGAAGCTTACACGCCGTTGATCTGGG
CAAGCTGGAACTATTGCGCGGCGC---------CCGCACCCCATGCCTACCGATCTGGAACACCTCTGTCAAACTGGGCC
GCCCGTTTAGGATCGACTCCATCAACCTGAACCTCATCTTCTATAACTGCACTGAGGAGGCCGCGGCTGCGGCAGCGGCA
CGTCGGGACAGGGGGCTGGTGCATGCGACCACGATGAGGTGCGTGAACGCGAGTAACGCGTTTGTTCGTGCGGGGGTGCG
TTACGACGCCACCGGGAACTACTCTGGCTATGCTTTGGAGGGCTGCAATGCTATCGTCCTCCCGATGCGGCGCTCGTAAC
AGCAGTTATCCAGGGTGAGACATTCACG------AACACGACCGACTACGAGCAGCTCATCAAAGATGGCTTCCTCTTGA
CATGGGAT------------------------------------------------------------------------
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>chr3A_962
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----------------------------CA--------------GTGCTCACTGCAATCTTCCCT----CCTTCTGCCCC
GATGTCTCTGAGCTGCTGGTCCTGGTTCCTCGCCTTCGCCTGGGTTTGGTGTCTGCCACTGATGCTCATGGCGGCCGAGG
AGCAGCAAGGGGATGGCTGCTTGGCCAAGTGTGGCAGCGTCACCATCTCCCCCCCGTTCTGGCTCACTGATTGGCAAACA
GGAAGATTATGTGGTTCGCCTGGACCGCTGGACTTCGAGCTTACATGCTATAACGGC--AG---TTATCCACTTCTTCCA
AGCTCTGTGCCCAACAACGCCGGCTTTGCAATCATGGACATATCCTATGAGGAACGCAGCTTGCGCGTCGTTGATCTACG
CAAGCTGCAACTATTACACGACCCGCCCAACATCTTCAACAGCTGCTTGCCGATGTGGAACACCTCTGCCAAACTGGGCC
GCCCGTTTAAGATCTCCCCCGTCAACCTGGAACTCATCTTGTACAACTGCACGGAGAAGGCCGCCGCGGCGGCA------
CGCCTGGATAAAGAACTGGTGCAGGCGAAGACGATGAGGTGCGTGAACACAAGCAACACGTTTGTTCATGCGGGGGTGCC
ATACGACACCACCGGGACCTACTCTAGTTATGCTTTGGAGGGCTGCGTTCCAATCGTCTTGCCGGTGCTGCGCTTGCCAT
CCGGCGAG-----------------ACG------AACACGAGCCACTACGAGCGGCTCATCCAAAGTGGCTTCCTCCTGA
AATGGGA-------------------------------------------------------------------------
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>chr3D_1172
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------------------CCTCGATTGCTAGACTTTCAGCTTACATGCCTTAACAAC--AG---TTACCCACTTTTACCG
AGCTCCGTGCACCACACCCTCGGCTTTGCAATCCTCAATATCTCCTATGGGGAACGCAGCTTGCACGTCATTGATCTGGG
CAAGCTGCAACTATTACACGACCCGCCCAAGATCTTCAGCCGCTGCTTGCCGGTCTGGAACACCTCTGCCAAACTGGGCG
GCCCGTTTAAGATCTCCCCCGTCAACCTGGAACTCATCTTGTACAACTGCACGGAGAAGGCCGCAGCTTTGGCA------
CGCCGGGAAAAAGAACTGGTTCAGGCGAAGACGATGAGGTGCGTGAACACGAGCAACACGTTTGTTGGCGCGGGAGTGCC
GTACGACCGCACCGGGAACTACTCCGGGTTTGCTTTGGAGGGCTGCGTTCCAATCGTCTTTCCGGTGCTGCGCTTGCCGT
CCGGCGAG-----------------ACG------AACGCAAGCCACTACGAGCGGCTCATCCACAGTGGCTTCCTCCTGA
AATGGGA-------------------------------------------------------------------------
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>chr3D_2228
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---------------TCTCTACCTTC------CCATAGCCCATGACCACCGAATCCAGCTACCTCGCCTTGTTCTTCACT
ACAATCTCTCCAAATC-ATCCGCTCCCATGTCTCTCAGCTGCTGCTGGTTCTTGGTCTTCGTCGGGGTGTGGTGGCTGCC
ACTGATGCTCCTGGGGTGGCCGAGGAGCAGCAGGGTGGAGACTGCTCGGCCCAGATGTGCGGCAACGTCAGCATCTTCGA
TCCCTTCAGGCTCACTGGCTTGCAGACCGGAAGATCATGCGCTTCTTCTCCC---CGGGATTTTGAAGTAGCTTGTACTA
ACAACAGTTATCCATCTCTACGGAGCTCCATACCCTTCAACAGGGGCTTCGAAATCCTCAACATCTCCTACGACGAACGC
AGCTTGTATGCGGTTGATCTGGAAAAGCTGGATTTATGGCGTGCCCGCAACAGCTGCCGTGTA------CCGATCTGGAA
CACCTCAGTCAAACTGAATGGGCCATTTAGGATCGACCCCGCCAACCTCAACCTCA
>SNPs
--------------------------S-------------------------S--------------S-----S--S---
---S-------------------S--S----S--------------S----------------S----------------
S--S-----------------------------S-----S----------------------------------------
---------------SS-----------S-S--------------S---------------------------S------
-------------------S-----------S----S-----------------------S-------------------
-------S----S---------------S--S-S-----SS-----SSS--------------SS---------S----S
S-------S----------------------------------S-SSS-SSS----------------------------
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------S--------------------------------------------------------SSS--------------
-----------------------S---S---------------S---------------------------S---S----
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-------S-----------S-------------------S-S-S------------------------------------
--------------------------------------------S-----------------------------------
---------------S----------------------------------------------------------------
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---------------S----------------------------------------------------------------
----------S----------------------------------------S----------------------------
-----------------------------------------S----SS-----------------------------SS-
---------------S------------------------------------------------S---------------
-------S---S----------S------------------------------------------------------S--
-S----------------S-----S-------------------------------------------------------
---------------------------S-----------------S------S----------S-----------S----
--------SSSS---------SS---S--S-----------------------------S---S------------S---
-S-S--------SS--------------S-----------------------SS-SS-SS--------------------
----------------------------------------------SS---S--------S-S---S---SS---S----
-------------S---S--------S------S--S-SSSSSS-SSS-S-SSSSS-SSSS--SSSS-SSS-S-------
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-----------------------------------------------S----S-----S------SS-------------
-------------------SSS-SSSSSS-S-S-SSS-SSSSSSSSSSSSSSSSSSSS-----------------S----
----------------------------------S----SS-------------------S------S------SSS---
-------------SS--S--S--S--S---------SS--------SS-------------SS-----------S-S---
S-------S-S--SS-----------------------------S--------------S---SS---S----S-----S
-S---------S---SS--S--------------------------------------------S---------------
--------------------S------------S--S---------------------------------------S---
-------------S-SSSS-S----SSS-SS---S----------S-S------------------S---S-S--S---S
SS-S--SS-SSSS------------------------------S----------------------------------S-
----------------------------------------------S-------------S--SSSSSS-----------
-------SS---S-------SS-S------------S-------------------
>forward_980
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CGGCTAACAGTACTCCGCTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_3607
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TCAGCAGTCTACGGAGCTCT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
