>input_sequence_70458
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--------------------------------------------------ATGCCACAGCTCGATCTGGAGTCCCTCTTC
TGCGTCGGCGGCGGCGAGTCAAGGTCGACGAAGGTCGCCTGCGAGACCATCGCGGTCGGAGCCTCCGACGTTGACGTCGC
CAACGCCCACGAGCAGTCGCGACGGATTATCTGGGCCTGGTCCGGGCGAACCGGCGCGGCGCTGGAGCGGGACGGGTCGA
CCAAGGGCGGCTCCAACCCCAAGAACGCGGCGGAAGAGACGACG---CGTAACAAGGGCCCGTCGAGGGCGCCGAGGAGG
TTGGAGTTGGAGGCAATCGTCGTCGGCGTTCTGCCTGCCGGGAAGATGGTCGTGCAGCAGCGGCGCTCTCATGTGGTCGG
CCGCGACTGGCGCCGGCCGGCCGCAGGGGCTAGGGTCTTCGCGAGCGAGGCCGTGGGCATGGAGCCCGTGTCCCCGAAGG
TGTCGTGCTTTGGGGCAGTGCGGTCCGAGAGCCGC------------------GC------------------GCCTGCG
GCGCGCGAGGAGGAGGA---------GGAGCGGAGCGGGTGCTGGGCGAGCGTCACCTCCGCGCTTGGTGGCTTTTTGTG
CGGCTCTGACTCGGACAACCGTCGGGAAGGTGGATCTGGGACGAGTGAATCGAAGCCCGCGGTGTCGGGGTCGCCGACGG
TAGACGTTTCAGTCCTGTCGCCCCCGCGGCCGGTTCTGGGACTGGGAGACGTGAAGCCCATTGCTTCGCGGCGGTGGCCG
GATGGAGATGGGCGGTGCTTGGTTTGA-----------------------------------------------------
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>chr2B_1_TraesCS2B01G311400
GATGAGCGGGCTGTCGGACATGGGGAAGAGAATGGACGCTCCGCCGCAGTCGGCTGTAGACTAGTCAAGGGTATCTGTGT
TGTGGGAATGGATATCCGCCGACGCCGGTCGTAGACTAGTTTTACTTTAGTCTGGTATAGTATTTAGTTAAAAACTGAAA
TATAATGAATTTCTTCTTGTTTACATGAAATCCGTCGTGTTTGCACGAATTTCGTCTGGTTAGTTCAAATAGTGATTGAA
ATGTATGCGGGAGCGTTTGATGGTGGCATGTGGCATCACTGTTTGAGGACTATCCTCCTGTCCGCGGACGGATACCGGAG
CAAATTTGCGGTTCGGTGTCGGAGATGCGCTTGGAAGCAATCTTCACGCGGTCGAGATTGTTAAAAAATAATTGAAACTG
CAAGTTCAATGTTTAAAACGTACTACTTTGCATTTTATTGGCTAAATATCCAATGGTAGTTGGTGTTCGATCCGGAGACA
TCTTGATCTACAGTCAAATGCTCTACCACTAAGCTATGGACCCAAGTGATAAATTAATGCGAATTTAGTTTATATGATAA
TTACAAGTAACACTCGAGAAACGGAGTAGAAAGACCAATTCAGATGTGACCCAAGAAACCCATAGCCGGCAGTACGTCAC
AGTCACCCCTCTCGTCTGGCGGTTCCATTCGGCAGCTCGAGGACACGAGAAAATCCACTTGCCGCAGAGCTGCTGACCTG
CGCGCTGAAACACGCCATCATTCCATCGAGCAAACTCCAAAACTTCCCCCTTCCCCGGTAACCCGCACCTCACTCAACGA
CCCTCCCAACGGCACTCGCCACTCGGC-------AGTCGCCACCGTCGCGGCGCTCCTCAGCCAAGCC-AACCTTTCGAA
ATCTCCACGCCTTTGTCGCCTCCC-TTTTATACCAAACCTCCTACCACCAGAGTCCCAGTTCCCAGTCATACACATCTGA
TATCAATCACTCACAGCTGCTGCCCAGCAGCAGGCAAGAAGAGGC-AAGAATGCCACAGCTCGATCTGGAGTCCCTCTTC
TGCGTCGGCGGCGGCGAGTCAAGGTCGACGAAGGTCGCCTGCGAGACCATCGCGGTCGGAGCCTCCGACGTTGACGTCGC
CAACGCCCACGAGCAGTCGCGACGGATTATCTGGGCCTGGTCCGGGCGAACCGGCGCGGCGCTGGAGCGGGACGGGTCGA
CCAAGGGCGGCTCCAACCCCAAGAACGCGGCGGAAGAGACGACG---CGTAACAAGGGCCCGTCGAGGGCGCCGAGGAGG
TTGGAGTTGGAGGCAATCGTCGTCGGCGTTCTGCCTGCCGGGAAGATGGTCGTGCAGCAGCGGCGCTCTCATGTGGTCGG
CCGCGACTGGCGCCGGCCGGCCGCAGGGGCTAGGGTCTTCGCGAGCGAGGCCGTGGGCATGGAGCCCGTGTCCCCGAAGG
TGTCGTGCTTTGGGGCAGTGCGGTCCGAGAGCCGC------------------GC------------------GCCTGCG
GCGCGCGAGGAGGAGGA---------GGAGCGGAGCGGGTGCTGGGCGAGCGTCACCTCCGCGCTTGGTGGCTTTTTGTG
CGGCTCTGACTCGGACAACCGTCGGGAAGGTGGATCTGGGACGAGTGAATCGAAGCCCGCGGTGTCGGGGTCGCCGACGG
TAGACGTTTCAGTCCTGTCGCCCCCGCGGCCGGTTCTGGGACTGGGAGACGTGAAGCCCATTGCTTCGCGGCGGTGGCCG
GATGGAGATGGGCGGTGCTTGGTTTGAAT-CTCTTGCGTGCTTGAGGAACAGGAAGCACGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCACGGGAACAGTTGTGTACACATCTTC
AGTTGTACACAG----CCTTCCGTGCTTCGGTAGGCACGGGAACTGCTGTACATTCACGGTTGCCGAGCATAGTAGTACG
TGTACTTGCCTGCTTGCGCCCGTGCTAAACAAAACCAACCTTTGATCTCCTCTTGTGCATTGTGTAT---CCCGCCCCTT
TCTTTTGTACAGCTAGCTACGCCTGCTTCCTTCCATGTACGGGCGCAAGCAGGTAAAATCGGTGTACGTA-------GTA
GTATCATTGTGCGAAATCGGTGTTTGACTTTTGTATGTACTTTCACTTCACTCTTTCTTTGGGGGCACAATCTCATCACT
CGGTCACTGGTCGGAGATAAAGAAAACAAAGGCAATGTGTACTACTCCTACTAGTGGTTGGGGCGCCACCTGGTGGCGCC
TCTTGATGCAGGATTGGGCACACTAATCAAATTCCAAATCCACTTTGTTCATAATCCCATATAATAAAACTCCATTATAG
TA
>chr2A_465
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----------------------------------------------------------------GTTCGAACCGGAGACC
TCTTGTATG-CAGTCAAATGTTCTACCACTAAGCTATGGACCCAAGTGATAAACTAATGCAAAATTGATTTATATGATAA
TTACAAGTAACACTCGAGAAACTGAGTAGAGAGACCAATTCAGATGTGACCCAAGAAACCCATAGCCGGCGGTACGTCAC
AGTCACACCTCTCGCCTGGCGGTTCCATTCGGCAGCTCGAGGACACGAGAAAATCCACTTGCCGCAGAGCTGCTGACCTG
CGCGCTGAAACACGCCATCATTCCGTGGAGCAAACTCCAAAACTTCC-------CCGGTAACCCGCACCTCACTCAACGA
CCCTCCCAACGGCA-------CTCGGC-------AGTCGCCACCGTCGCGGCGCTCCTCAGCCGAGCCAAACCTTTCGAA
ATCTCCACGCCTTTGTCGCCTCCC-TTTTATACCAAACCTCCGGCTCCCAGAGTCCCAGTTCCCACCG------------
TAGCAATCACTCACAACTGTTGCCTAGCAGCAGGCAAGAAGAGGC-AAGGATGCCACAGCTCGATCTGGAGTCCCTCTTC
TGCGTCGGCGGCGGCGAGTCCAGGTCGACGAAGGTCGCCTGCGAGACCATCGCGGTCGCAGCCTCCGACGTCGACGTCGC
CAGCGCCCACGAGCAGTCGCGCCGGATTATCTGGGCCTGGTCCGGGCCAACCGGCGCGGCGCTGGAGCGGGACGGGTCGA
CCAAGGGCAGCTCCAACCCCAAGACCGCGGCAGAAGAGACGACG---CGTAACAAGGGCGCGTCGAGGGCGCCGAGGAGG
TTGGAGTTGGAGGCAATCGTGGTGGGCGTTCTGCCTGCCGGGAAGATGGTCGTGCAGCAGAGGCGCCCTCCTGTGGTCGG
CCGCGGCTGGCGCCGGCCGGCCGCAGGGGCCAGGGTGTTCGCGAGCGAGGCCGTGGGCACGGAGCCCGTGTCCCCGAAGG
TGTCGTGCTTTGGGGCTGTGCGGTCCGAGAGCCGC------------------GCGGCGGCGCCTGCACCTGCGCCTTCG
CCGCGCGGGGAGGAGGAGCAGGTCGAGGAGCGGAGCGGGTGCTGGGCGAGCGTCGCCTCCGCGCTTCGTGGCTTGCTATG
CGGCTCTGACTCGGACAACCGTCGGGAAGGTGAATCTGGGGCGAGTGAATCGAAGCCCGCGGTGTCGGGGTCGCCGACGG
TGGACGGTCCAGTTCTGTCGCCGCCGCGGCCGGTGCTGGGTCTGGGAGACGTGAAGCAAATTGCTTCGCGGCGGTGGCCG
GATGGAGATGGGCGGTGCTTGGTTTGAATTCTCCTGCGTGCTTGAGGAACAG----------------------------
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-------------------------------------------------GAAGCACGGGAACAGTTGTGTACACATCTTC
AGTTGTACAGAGTCTCTCTTGCGTGCTTTGGTAGGCACGGGAACAGCTGTACATTCACGGTTGCCCAGGCGGCAACCAGC
-GTACTCCCCGGCTTGCACCCGTGCTAAACAAAACCAAGCTCTGATCTTCTCTCGTGCAGTGTGTATGGACCCGTCTATT
TCTTTTGTACAGCTA----------------------------------------------------GTAGTAGTACGTA
GTATCATTGTGC-AAATCGGTGTTTGACTTTTGTATGCAGTTTCACTTCACTCTTTCTTTGGGGGCACAATCTCATCACT
CGTTCACTGGTCGGAGAAA---AAAACAAAGGCAATGTGTACTACTCCTA------------------------------
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>chr2D_534
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-----------------------------------------------------TTAATGCATATTTAGTTTATATGACAA
TTTCAAGTAACAGTCGAGAAACTGAGTAGAAAGACCAATTCAGATGTGACCCAAGAAACCCAAAGCCGGCAGTACGTCAC
AGTCACACCTCTCGCCTGGCGGTTCCATTCGGCAGCTCGAGGACACGAGAAAATCCACTTGCCGCAGAGCTGCTGACCTG
CGCGCTGAAACACGCCATCATTCCATGGAGCAAACTCCAAAACTTCC-------CCGGTAACCCGCACCTCACTCAACGA
CCCTCCCAACGGCA-------CTCGGCACTCGGCAGTCGCCGCCGTCGCGGCGCTCCTCAGCCAAGCC-AACCTTTCGAA
ATTTCCACGCCTTTGTCGCCTCCCTTTTTATACCAAACCTCCGACTCCCAGAGTCCCAGTTCCCAGCCATACACATCTGA
TAGCAATCACTCACAACTGTTGCCTAGCAGCAGGCAAGAAGAGGCAAAGGATGCCACAGCTCGATCTGGAGTCCCTCTTC
TGCGTCGGCGGCGGCGAGTCAAGGTCGACGAAGGTCGCCTGCGAGACCATC---------GCCTCCGACGTCGACGTCGC
CAACGCCCACGAGCAGTCGCGCCGGATTATCTGGGGCTGGTCCGGGCCGACCGGCGCGGCGCTGGAGCGGGACGGGTCGA
CCAAGGGCAGCTCCAACCCCAAGACCGCGGCGGAAGAGACGACGACGCGTAACAAGGGCGCGTCGAGGGCGCCTAAGAGG
TTGGAGTTGGAGGCAATCGTGGTGGGCGTTCTGCCTGCCGGGAAGATGGTCGTGCAGCAGCGGCGCTCTCCCGTGGTCGG
CCGCGGCTGGCGCCGGCCGGCCGCAGGGGCCAGGGTGTTCGCGAGCGAGGCCGTGGGCACGGAGCCTGTGTCCCCGAAGG
TGTCGTGCTTTGGGGCTGTGCGGTCCGAGAGGCGCGCGGCGATGCCCGCACCTGC------------------GCCTGCG
CCGCGCGGGGAGGAGGAGCAGGTCGAGGAGCGGAGCGGGTGCTGGGCGAGCGTCGCCTCCGCGCTTCGTGGCTTTTTGTG
CGGCTCTGACTCGGACAACCGTCGGGAAGGTGAATCTGGGGCGAGTGAACCGAAGCCCGCGGTGTCGGGGTCGCCGACGG
TGGACGTTCCAGTTCTGTCGCCCCCGCGGCCGGTTCTGGGTCTGGGAGATGTGAAGCAAATTGCTTCGCGGCGGTGGCCG
CATGGAGATGGGCGGTGCTTGGTTTGAAT-CGCTTGCGTGCTTCAGGAACAGGGGG------------------------
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-------------------------------------------------------------CAGTTGTGTACACATCTTG
AGTTGTAGTGAG----TCTTGCGTGCTTTGGTAGGCACGGGAACAGCTGTACATTCACGGTTGCCGAGGCGGCAACCAGC
-GTACTTGCCTGCTTGCGCCCGTGCTAAACAAAACTAAGCTCTGATCTTCTCTCGTGCAGTGTGTATGGACCCGTCTCTT
TCTTTTGTACAGCTA----------------------------------------------------GTA-------GTA
GTATCATTGTGCTAAATCGGTGTTTGACTTTTGTTATACT---------ACTCTTTCTTT-GGGGCACAATCTTATCACT
CGCTCACTGGTCGGAGAAA---AAAACAAAGGCAATGTGTACTACTCCTATATGGT------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--------S
-----SSSSS----------S---------------------------------------S-------------------
----------------------S---------------------------------------------------------
------S-------S-----------------------------------------------------------------
--------------------------S--------------------SSSSSSS--------------------------
--------------SSSSSSS-----------------------------------------------------------
------------------------------------------S--SS-------------------S-------------
--S------------S---S----S------------------------S------------------------------
----------------------------------------------------------S------------S--------
---------------------S-------------------------S--------------------------------
--------S---------------S----------------------------------S--------------------
--------------------S--S----------------------------------------------S---------
-----S------------------------S-----S----------------------S--------------------
----------------S---------------------------------------------------------------
S------S----------------------------------------------S-----------S-------------
--------------------------------S-------S---------------------------------------
-S------S----S--------------------------S----------------SS---------------------
-----------------------------------------------------SS-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
---------S------S---S-------S---------------S-----------------------SSSSSS-SS-SS
S-------------------------------------S--S------S----S-----S--------------S-S---
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
------------S------------------------S-S----------------------------------------
--S--------------S-SSS----------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_64
--------------------------------------------CGCAGTCGGCTGTAGACTAG----------------
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>reverse_1682
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-AGACGTTTCAGTCCTGTCGC-----------------------------------------------------------
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>forward_1301
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-TGGAGTTGGAGGCAATCGTC-----------------------------------------------------------
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>reverse_2460
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-----------------------------------------------------------TTGTGTATCCCGCCCCTTTC-
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