>input_sequence_70452
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-----------------------------------------------------------------------------ATG
GCTGCCAACTACTACTGGGGTATGTGGGGCGCCGCCACTACCAGTAGTACAGCTGCTACCTGCCCGGCGCCGGCGTCAGC
AGCTGAGCCGTCTTGGGAGGAGCAGGCGTTCGCGCGGGACGCCGCGGGCCACCTTGGTGCCGGCTGCGTGTGGCCGCCGC
GCTCCTACACCTGCACCTTCTGCCGCCGAGAGTTCCGGTCTGCGCAGGCGCTCGGCGGACACATGAACGTGCACCGCCGC
GACCGAGCTCGTCTCCGGCAGTGCGTCTCCCCGCCAGACCATCAAGCACAGCCCCAGCCGACAAGCCCTCATGATCATCA
TGAGCACCTTCAGCCAGGGATGCAGTATAGGGCGGCAGTGCGCCCTAAATCTCCACAGGATCAGCAGGCCAGCATGATAG
GCCCCTCTACTACCTCTCCTTCCTATATATCCAGCATCATCAAAGAGAGCAGGAACAAGGTGTTCATCTCCATGCCTGCT
GAGGAAGCCTCGGAAAGCGGCGATGAGGGGGAAAGGAGGAAGCGCAGGCGTGTCGTCGATCAGCCTCCAGCGGTGGCGCT
ACCGTTCTTCCTGCGGTGGTCACCAGCATCAAGTGAAAGAGAGGGAATGCAAGGAGCTGACGACGGTGATACAAAGGTAC
CCAAAGCAGCCCCAAGCCCTAGCCCTCTCCTTCTTGGAGTAGGCCGGCAAGAAGTGGATCTAGAGCTTAGGCTTGGGACT
AGCTAG--------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G255900
TATTTCCTGAATTTATTTCATGTTCTCCTGCGCTATTCTTTCTGTGGTATGGCGTGCTCATCAACTATGAGGTGTTTGTG
ATGACTTCATCAACCTCTAGATCTGTCGACTCGGTCTCTTAGAGGTGCTCAGGGAGTGCGTGTCTGCGTTCATTAGGTGA
GTGTGCGTGGGTGTATGCGAGCGTCTGTGTTTGTATCATGTTTGTAAAAATATAAATTATTACTGAGCATATAATCAGAT
TTCATTTGTCACTTGAGCATTAACATATGCTAACCAGGGATGAAGAGGCGAGGAGGCTCACCCTTCCTTTTCTCAAACAA
ATTAACACATGTTAGCTCATGATAGATAGATGAACCTAACATAGAGTTATATGATCTACAAAAATAAGAAGTTATTAAAA
A----GATTGTGCAATTATTAGGCAAATTGAGATAGAATCCAAATTAATGGTTGATAATGCATGTTCTAAACATTAGTCA
TGTTCA-CATTAACTAGCAGGTGAAAGTATTGTATAATTAAAGCACATTACAATTAGGTTGTTTTTGCATCCACTGGAGT
TGAAAGAATGCTATCGTTATGGATATGTCTGGTGAAACTTTTTACCGAAAAAGTCTGGTGAAACTTTTTAAAACACTAAG
TATTGATATCTTCAAATAATAAGATGAAT--TTATCATAAAACT------------------------CAGA---TATTA
GCTAGTGGTAAACAAACAAAAACACTGTAAACTAGCTAGGTAGAGGAAGTGTATCTCACATCAAACATGGTAGTCATCTC
CCAGCTAGCTATGCTCAAGTACTACTCATGTGGTACATATACATGTAAACGCAAACAACAAAAAGAACAGCGGTCATCTT
CCTACATCTTAACTTGGCATGC---ACTACTGCTAGTTAGGCTACTAGCTATAGCTAGCTAGCCATCTAGTATTGGTACC
AACCAACCAGTGCAGAGCTCGATCAAACCAACCCATGGCATGAACTCCACCGCAACCGCGATCCATCTACCTAGCAGATG
GCTGCCAACTACTACTGGGGTATGTGGGGCGCCGCCACTACCAGTAGTACAGCTGCTACCTGCCCGGCGCCGGCGTCAGC
AGCTGAGCCGTCTTGGGAGGAGCAGGCGTTCGCGCGGGACGCCGCGGGCCACCTTGGTGCCGGCTGCGTGTGGCCGCCGC
GCTCCTACACCTGCACCTTCTGCCGCCGAGAGTTCCGGTCTGCGCAGGCGCTCGGCGGACACATGAACGTGCACCGCCGC
GACCGAGCTCGTCTCCGGCAGTGCGTCTCCCCGCCAGACCATCAAGCACAGCCCCAGCCGACAAGCCCTCATGATCATCA
TGAGCACCTTCAGCCAGGGATGCAGTATAGGGCGGCAGTGCGCCCTAAATCTCCACAGGATCAGCAGGCCAGCATGATAG
GCCCCTCTACTACCTCTCCTTCCTATATATCCAGCATCATCAAAGAGAGCAGGAACAAGGTGTTCATCTCCATGCCTGCT
GAGGAAGCCTCGGAAAGCGGCGATGAGGGGGAAAGGAGGAAGCGCAGGCGTGTCGTCGATCAGCCTCCAGCGGTGGCGCT
ACCGTTCTTCCTGCGGTGGTCACCAGCATCAAGTGAAAGAGAGGGAATGCAAGGAGCTGACGACGGTGATACAAAGGTAC
CCAAAGCAGCCCCAAGCCCTAGCCCTCTCCTTCTTGGAGTAGGCCGGCAAGAAGTGGATCTAGAGCTTAGGCTTGGGACT
AGCTAGCTGCTGCTCCCAAAGTTGCATGATTTAATCTTCTAATTTTGCACTTCCAACTCGATCGTGTGCGTGAGTGTTCA
TGCTTCAGTTCTTCTTTTCCCCCTCGGTCTCTATTTCGTTTGTGCTTAATTCTTCTTGA-TTGCCCTTAGTCAATTTATC
CGAATCCAAAAGCTTGTTTCTCTACATATGTGTGTATGTATGTATGTCGATTGAACTCTGCAAAAGCTCAAATCAAATCA
TGTTACAATTTGTACCTCCTATCAAGTGTTTAATTTGATTATGCTCGGATTACTTGGAGAGTTTCTTCTATGATTCCCAT
GTTTGATATCTCAGGTGATTTGCTTAATTGGGCAGTCTTATCAATACATGTGATTTTGTCAATTCTCAATGTTGATTTCT
TGGAGAAGTTTGTGCTTCCATGGATCATTCATAGTCGTAAA-TAGTGCATGATGTTTGATCAGGAAACAAAGAGCTGTT-
GAGATTTTTGTGTACAAAATGTGAAGCAGAAACTCAAATTCATTGACAAAACATCAATATCGTTGTTCCAAACTAATTAT
CTGTTAACGTTTCTTCAACAAATTATTTTTCAAAAAAA-AATCTTCAAACGATATAGGCAATAAATAGCCTTGTTTGCGA
AAGAGGACATATATAGCTATATATTTCACTACCAATCTACCATGTATAGTTCATAAATTAAGATCTTATTAGCTAATCTA
TGTGAATCATATTCCACAGCGCTAGAACCAAATCTCTAATATTCATTTCATGTTTGCCTCGTGATGCCTCGCCTATAGTC
TGCCATGCATTGGAGTTTTCCTCGTCAACCATGAACAAGGTTGCTTCTTCTTTCAAGTCAGGTCACAAGCAGACAGTAGA
TAGGGCAAAGTGATGATCTAATCTTGTCTTGTACACACACTCCTATATATGTAGGGTACAAGCATTGCAGAAAAGAGAGA
GAATATGTCTCTCATATATTATACTATCATATCAAGATCAGGTTGATAAA
>chr2D_362
TAGAT---------------------------------------------------------------------------
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-----------------------------------------------TATATGATCTACAAAAGTAAGAAATTATTAAAA
AAAAAGATTGGGCAATTATTAGGCAAACTGAGACCGAATCCAAATTAAAGGTTGATAATGCATGTTCCAAACATTAGTCA
TGTTTCTCATTACCTAGCAGCTGAAAGTATTGTGTAAACAGAACACATTACAATTAGGTTATGTTTGCATCCACTGGAGT
TGAAAGAAATCTATCGTTATGAATATGTCTGCTGAAACTTTT---------------------------AAAACATTAAG
TATTGATATCTTCAATTAATTAGATGAATTTATATCATAAAAGTCTGGGATTTTACAATATACTAAACCAGATAGTATTA
GCTAGTGGTAAACAGACAAAAGCACTGTAAACTAACTAGGTAGAGGAAGTGTATCTCACATCAAACATGCTATTCATCTC
CCAGCTAGCTATGCTCAAGTACTACTCATGTGGTACATGTACATATAAACGCAAACAACAAAAAC-ACAGCGGCCATCTT
CCTACATCTTAACTTGGCAAGC---ACTACTGCTAGTTCGGCTACTAGCTATAGGTAGCTAGCCATCTAGTACTGGTACC
AACCAACAAGTGCAGAGCTCGATCAAACCAACCCATGGCATGAACTCCACCGCAACCGCGATCCATCTACCTAGCAGATG
GCTGCCAACTACTACTGGGGTATGTGGGGCGCCGCCACTACCAGTAGTACAGCTGCTCCCTGCCCGGCGCCGGCGTCAGC
AGCTGAGCCGTCTTGGGAGGAGCAGGCGTTCGCGCGGGACGCCGCGGGCCACCTTGGTGCCGGCTGCGTGTGGCCGCCGC
GCTCCTACACCTGCACCTTCTGCCGCCGAGAGTTCCGGTCTGCTCAGGCGCTCGGCGGCCACATGAACGTGCACCGCCGC
GACCGAGCTCGTCTCCGGCAGTGCGCCTCCCCGCCAGACCATCAAGCACAGCCCCAGCCCACAAGCCCTCATGATCATCA
TGAGCACCTTCAGCCAGGGATGCAGTATAGGGCGGCAGTGCGCCCTAAATCTCCACAGGATCAGCAGGCCAGCATGATAG
GCCCCTCTACTACCTCTCCTTCCTATATATCCAGCATCATCAAAGAGAGCAGGAACAAGGTGTTCATCTCCATGCCTGCT
GAGGAAGCCTCGGAAAGCGGCGATGAGGGGGAAAGGAGGAAGCGCAGGCGTGTCGTCGATCAGCCTCCAGCGGTGGCGCT
GCCGTTCTTCCTGCGGCGTTCACCAGCATCAAGTGAAAGAGAGGGAATGCAAGGAGCTGACGACGGTGATACAAAGGTAC
CCAAAGCAGCCCCAAGCCCTAGCCCTCTCCTTCTTGGAGTAGGCCGGCAAGAAGTGGATCTAGAGCTTAGGCTTGGGACT
AGCTAGCTGCTGCTCCCAAAGTTGCATGATTTAATCTTCTAATTTTGCACTTCCAACTCGATCGTGTGCGTGGGTGTTCA
TGCTTCAGTTCTTCTTTTCCCCCTCGGCCTCTATTTCCTTTGTGCTTAATTCTTTTTGA-TTGCCCTTAGTCAATTTATC
CGAATCCAAAGGCTTGTTTCTCTACATATGTGTGTATATATGTATGTCGATCGAACTCTGCAAAAGCTCAAATCAAATCA
TGTTACAATTTGTACCTCCTATCAAGTGTTTAATTTGATTATGCTCGGATTACTTGGAGAGTTTCTTCTATGATTCCCAT
GTTTGATATCTCAGGTGATTTGCTTAATTGGGCAGTCTTATCAATACATGTGATTTTGTCAATTCTCAATGTTGATTTCT
TGGAGAAGTTTGTGCTTCCATGGATCATTCGTAGTTGTAACCTAGTGCATGATGTTTGATCAGGAAACAAAGAGCTGTTA
GAGATTTTTGTGTACAAAATGTGAAGCAGAAACTCAACTTAATTGACAAAACATCAA-ATCGGTGTTCCAAACTAATTAT
CTGTTAACGTTTCTTCAACAAATTATTTTTCAAAAAAATATTCTTCAAACGATATAGGCAATAAATAGCCTTGTCTGCGA
AAGAGGACATATATAGCTATATATTTCACTACCAATCTACCATGTATAGTTCATAAATTAAGATCTT---AGCTAATCTA
TGTG-ATCATATTCCACAGCGCTAGAACCAAATCTCTAATATTCATTTCATGTTTGCCTCGTGATGCCTCACCTATAGTC
TGCCATGCATTGGAGTTTTCCTCGTCAACCATGAACAAGGTTGCTTCTTCTTTCAAGTCAGGTCACAAGCAGACAGTAGA
TAGGGCAAAGTGATGATCTAATCTTGTCTTGTACACACACTCCTATATATGTAGGGTACAAGCATTGCAGAAAAGAGAGA
GAATATGTCTCTCGTATATTATACTAGCATGTCAAGATTAGGTTGATAAA
>chr2B_367
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----------------------------------------------TTATATGATCTACAAAAATAAGAAATTGTTAAAA
A----GATTGTGCAATTATTAGGCAAATTGAGATAGAATCTAAATTAATGGTTGATAATGCATGTTCCAAACATTAGTCA
TGTTCA-CATCAACTGGCAGGTGAAAGTATTGTGTAAATAAAGCACATTACAATTAGGTTATTTTTGCATCCACTGGAGC
TGAAAGAAAGCAATCGTTATGGATATGTCTGGTGAAACTTTT---------------------------AAAACACTAAG
TATTGATATCTTCAAATAATTAGATGAAT--ATATCATAAAAGTCTGGGATTTTACAATGTACTAAACCAGA---TATTA
GCTAGTGGTAAACAGGCAAT--CACTGTAAACTAGCTAGGTAGAGGAAGTGTCTCTCACATCAAACATGGTGTTCATCTC
CCAGCTAGCTATGCTCAAGTACTACTCATGTGGTACATATACATATAAACGCAAACAACAAAAAC-ACAGCGGCCATCTT
CCTACATCTTAACTTGGCATGCACTACTACTGCTAGTTAGGCTACTAGCTATAGCTAGCTAGCCATCTAGTACTGGTACC
AACCAACCA--GCAGAGCTCGATCAA----ACCCATGGCATGAACTCCACCGCAACCGCGATCCAGCTACCTAGCAGATG
GCTGCCAACTACTACTGGGGTATGTGGGGCGCCGCCACAACCAGTAGTACAGCTGCTACCTGCCCGGCGCCGGCGTCAGC
AGCTGAGCCGTCTTGGGAGGAGCAGGCGTTCGCGCGGGACGCCGCGGGCCACCTTGGTGCCGGCTGCGTGTGGCCGCCGC
GCTCCTACACCTGCACCTTCTGCCGCCGAGAGTTCCGGTCTGCGCAAGCGCTCGGCGGCCACATGAACGTGCACCGCCGC
GACCGAGCTCGTCTCCGGCAGTGCGCCTCCCCGCCAGACCATCAAGCACAGCCCCAGCCCACAAGCCCTCATGATCATCA
TGAGCACCTTCAGCCAGGGATGCAGTATAGGGCGGCAGTGCGCCCTGAATCTCCACAGGATCAGCAGGCCAGCATGATAG
GCCCCTCTACTACCTCTCCTTCCTATATATCAAGCATCATCAAAGAGAGCAGGAACAAGGTGTTCATCTCCATGCCTGCT
GAGGAAGCCTCAGAAAGCGGCGATGAGGGGGAAAGGAGGAAGCGCAGGCGTG---TCGATCAGCCTCCAGCGGTGGCGCT
ACCGTTCTTCCTGCGGCGGTCACCAGCATCAAGTGAAAGAGAGGGAATGCAAGGAGCTGACGGCGGTGATACAAAGGTAC
CCAAAGCAGCCCCAAGCCCTAGCCTTCTCCTTCTTGGAGTAGGCCGGCAAGAAGTGGATCTAGAGCTTAGGCTTGGGACT
AGCTAGCTTCTGCTCCCAAAGTTGCATGATTTAATCTTCTAATTTTGCACTTCCAACTCGATCGTGTGCGTGGGTGTTCA
TGCTTCAGTTCTTCTTTTCCCCCTCGGTCTCTATCTCGTTTGTGCTTAATTCTTTTTTATTTGCCCTTAGTCAATTTATC
CGAATCCAAAGGCTTGTTTCTCTACATATGTGTGTGTATATGTATGTCGATCGAACTCTGCAAAAGCTCAAATCAAATCA
TGTTACAATTTGTACCTCCTATCAAGTGTTTAATTTGATTATGCTC-------------------TTCTATGATTTCCAT
GTTTGATATCTCAGGTGATTTGCTTGATTGGGCAGTCATATCAATACATGTGATTTTGTCAATTCTCAATGTTGATTTCT
TGGAGAAGTTTGTGCTTCCATGGATCATTCATAGTCGTAACCTAGTGCATGATGTTTGATCAGGAAACAAAGAGCTGTT-
GAGATTTTTGTGTACAAAATGTGAAGCAGAAACTCAAATTAATTGACAAAACATCAA-ATCGTTGTTCCAAACTAATTAT
CTGTCGACGTTTCTTCAACAAATTATTTTTCAAAAAAAAAATCTTCAAACGATATAGGCAATAAATAGCCTTGTTTGCGA
AAGAGGACATATATAGCTATATATTTCACTAGCAATCTACCATGTATAGTTCATAAATTAAGATCTT---AGCTAATCTA
TGTGAATCATATTCCACAGCGCTAGAACCAAATCTCTAATATTCATTTCATGTTTGCCTCGTGATGCCTCACCTATAGTC
TGCCATGCATTGGAGTTTTCCTCTTCAACCATGAACAAGGTTGCTTCTTCTTTCAAGTCAGGTCACAAGCAGACAGTAGA
TAGGGCAAAGTGATGATCTAATCTTGTCTTGTACACACACTCCTATATATGTAGGGTACAAGCATTGCAGAAAAGAGAGA
GAATATGTCTCTCGTATATTATACTAGCATATCAAGATTAGGTTGATAAA
>SNPs
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S---------
-------------------------------------------------------------------S------------
---------------------------------S---S----------------------S-------------------
--------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
--------------------S----------S----------S-------------------------------------
--------------S------S--------------------------------------------------S-------
--------------------------------------------S-------------------SS-------S------
------------------------------------------------------------------------S-------
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----------------------------------------------------------S---------------------
-------------------------S---------------------------------S--------------------
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----------------S---------------------------------------------------------------
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------------------------------------------------------------------------S-------
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----------S--------------------------S-------------S----------------------------
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----------------------------------------S---------------------------------------
----------------------------------------S----------------S----------------------
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-------------------------------------------------------------------SSS----------
----------------------------------------------------------------------S---------
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-------------S------------S-----------S-----------
>forward_58
--------------------------------------TTTCTGTGGTATGGCGTGCT----------------------
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>reverse_1617
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----------------TGGTCACCAGCATCAAGTGA--------------------------------------------
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>forward_171
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-----------------------------------------------------------------------ATTAGGTGA
GTGTGCGTGGG---------------------------------------------------------------------
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>reverse_1833
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------------------------------------------------------------------------AGTGTTCA
TGCTTCAGTTCTTCT-----------------------------------------------------------------
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