>input_sequence_70427
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-------------------------------------------------------------------ATGGTGTGTGGAC
ACAGCGACGAGTCTCTGTTACATGCTCTAGTTTTGTGTGTTCATGCAACAATGTTTTGGGACGAGGCAACGAGATTCTTC
GGACTGACCTTGCCTCGGCTACACCCAGATACATGGACTAGAGACCTTCTGGATCATCAGTTCATCAAGAAGGAAAATGC
GGCAATTGTTATCTCTGTCATGTGGGTGATCTGGAGTAGCAGAAATAAGTATATGCATGGACAAATGCACTATACCAATC
CCGACGCTCTATGAAGATTATACATGAGATGATTAGATCTCTGAATATTCCCAGTGTGCAACACACCGAGCAGAAGAAGA
ATGCAGTATGGAGACCACCAGAGGATGGAAGAGTTAATACACTGATGCAGCCATGGGTACGAATGTGGGGGCGGCTGGTG
CGGCAATGGTGGCTCGGAATCACGAAGGAAATCTTCTGGTCGGAAGTGCATCAGGGAGTAGCGGGTCCCTATATTGGTGA
AGCACTGGCTTGCAGGGATGCTATGCTCTTTGGGATTGGGCAAGGATGGACAAGTGTGGAGATTGAAACGGACAGCCAAG
TTTTTGTGGAAGATTGGAAAGAAAGGAGAGATAAATACGTGGGCGGTCTCACTATCAGAGAGATGACCACCTATCTCTTG
TTTTTTCTGGGGTTCGAATTAAAATTTAAGGAAAGGGAAGTGGACATGCCACCACTTCTTCTTCGGTACAACCCC--TAA
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>chr7B_1_TraesCS7B01G341700
TTAATAGCAAAGGTTATATTTCCAACATGGCAAGAAGAAACATGTCACGGGGAACAAAACTTTGAACATATTGTTGAGTT
TGCGAGGTCAAGGGTACAAAGATGGAGTTACAGGAATGCGTTTTTTTGCAAGAAGGGAGGTACACCTCAAAGCATTGGTC
CAAACACTACTGGCCTATTCTATGAGATGTTTTAAGCTCACAAAAGGTTTATGCCACAAAGTTATGACAGTTATATCCAA
GT----ATTGTTGGGCTGGGACACTTGACAAGAGAGGTATGCATTGGCAACCTTGGAAGAAGAGATGGCTATTTCGGAAT
CTAAAGGTGCTCTAGGCTTTCGAGACCTAGAAATCTTCAATGCTTCAATGCTTGCTAAGCAAGCTTGTAGGTTGTTAGAC
AACCCAGACATAAAGGA------------------AGCTACTACCCACATGGTGATTTTCTCCGGGTAAGATGCCCGGTG
AGCTCATCTAAAACATGGCGTGCGATTATTCAAGGGAG-AAACCTCTCCATCAAGGGCTGGTTTGGCGAGTGGGTGGTAG
AATGACCACTGAGATATGGCATGATCAGTGGATCGAGGGCACCACTACTATAAAACCTTTGTGCACACTATTGAATGACC
CGTTGCAGTTAATGGCTGATTTATTGGATGAGGATACGGGTCAATAGAATACCGACCTGGTTAGCAAATTTTTCATTACA
CCAGATGCGGAAGCAATACTGAATCTCCGAAAGACCAATGTCACCTGGTGAGGATTATTGGGCATGGGCATGTAAGAGGT
CTGGATATTTCACAGTCAAATCAGCATATTGAGAACTGAAAAATTTGTAGTGTAACTCTCAGAACACTCCTGGGAGTTCC
TCTAAAGGGAGGA----GAGTTGGCGTGCAATTTGGAAGTTGCGTGTCCAAGCCAAGATCAGGATGTTCAGGTGGCGGGT
TTTGGAGGGATTCTTACTGGCTAACGAGGAACTCGTATGGCGACATGTCTCTGAAGATGTGACTTGTATGGTGTGTGGAC
ACAGCGACGAGTCTCTGTTACATGCTCTAGTTTTGTGTGTTCATGCAACAATGTTTTGGGACGAGGCAACGAGATTCTTC
GGACTGACCTTGCCTCGGCTACACCCAGATACATGGACTAGAGACCTTCTGGATCATCAGTTCATCAAGAAGGAAAATGC
GGCAATTGTTATCTCTGTCATGTGGGTGATCTGGAGTAGCAGAAATAAGTATATGCATGGACAAATGCACTATACCAATC
CCGACGCTCTATGAAGATTATACATGAGATGATTAGATCTCTGAATATTCCCAGTGTGCAACACACCGAGCAGAAGAAGA
ATGCAGTATGGAGACCACCAGAGGATGGAAGAGTTAATACACTGATGCAGCCATGGGTACGAATGTGGGGGCGGCTGGTG
CGGCAATGGTGGCTCGGAATCACGAAGGAAATCTTCTGGTCGGAAGTGCATCAGGGAGTAGCGGGTCCCTATATTGGTGA
AGCACTGGCTTGCAGGGATGCTATGCTCTTTGGGATTGGGCAAGGATGGACAAGTGTGGAGATTGAAACGGACAGCCAAG
TTTTTGTGGAAGATTGGAAAGAAAGGAGAGATAAATACGTGGGCGGTCTCACTATCAGAGAGATGACCACCTATCTCTTG
TTTTTTCTGGGGTTCGAATTAAAATTTAAGGAAAGGGAAGTGGACATGCCACCACTTCTTCTTCGGTACAACCCC--TAA
ACACATTAACGCACGAGATTTCTTCATACCCCTTCATCATAAAGGGTAGAATGGTCTTTTTCGAAATAC-----------
--TATATGGCATTGGAGACATCCCTCGACTGGGCCGGCCCATTGATAAAAGGCTGCAG----------------------
-----------------------GGAGCGCGACCCGAGATGTAAAAATTCACAAAATACATGCCACTGCTAAGGCCATGC
TTGGATCCAAGGGACTATTTTTAGTCTGACTAAAACTAGCCTCTTTTAGAGGCTAAAGTTCCAATCAGCCCTGACTAAAT
AGAGGCTAGAACTAGTCTTGAGACTAAAAAAGTTTAGTCAGGAAAACCCTACTAAAATGTGGATTAGTCCTCTCTCTCCT
CATTTAACTCCTCTCCTTTAACACATGCGAGTTCGGGATTGGAGGGTTTGGAGGATAATAAATGCTCATTAACATATTTT
AGTCTATTTAGTATTTGTATCCAAGCATGGGTGAGGCTATCAAGTTTTAGTCCCACTACTTTTAGTCATGGGACTAAAAC
GTATCCAAGCACCCTCTAAGAATCGAACCACAGACCTCTTACACATGAAGTTGAGTCGCTCACCAATTGAGCCAACTAAT
GTTAGTGAATAATTATGAGTGTGCAAACTTAAGAATCTCTCCAGCCGGATTTATTGGGCCCATGAGCCGAAACGAAAAGA
CCACGAAAAACGCACAGAAGAAATTGGAAAT-AAATCTC--AGCTAATCGCCGTTATTAATTAGGCCTATTAACTAACAT
GTGC-----ATGCAATGGCTACTGCCTGATCCAATCAAGGAGACCCATGCGCTAGCTTTCATGGAGAGACGAGGGAATGA
AGGGACGTGCTTAAATGCAGCAGCCCAA----TTTTTTTTCATAAACTATGCAGCAGCCTAGTAAACATGGTA--CAAGT
TTTGGTGCCTCTCAGACCCGATAAACCTTAATGGAGGGAGTAACACAAAGGAAATTATGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAATCCAACTTTTTTTGAACCA
>chr7B_20
-------------------TTCCAACATGGCAAGAAGAAACGTGTCATAGAACA-AAAAGTTTGAACATATTGTTGAGTC
TGCAAGGTCAAGAGTCCAGGGATGGAGTTACAGGAATGCGCTTTG-TGCAGGAAGGGAGGTATACCTCAAATCAGTGGTC
CAAGCACTACATGCTTATTCTATGAGATGTTCTAAGCTCAACAAAGGTTTATGCCGCGAAGTTATGACAGTTATGTCCAA
GTATTAATTGTTGGGTCAGGTCACTTGATAGGATAGGTGACAATA-------TTGGAAGAAGAGATGGCTATTCCAAAAT
CTAAAGGTGGTCTAGGCTTTCGAGACCTAGAGATCTTCAATGATGCAATGCTTGTTAAGCAAGCTTGTAGGCTGTTAGAC
AACCCAGACAGCTTGTGCGCACGCGTGTTGAAAGCAGCTACTACCCACATGGTGATTTTCTCCGGGCAAGATGCCCAAAG
AGCTCATCTAAAACATGGTGTGCGATTATTCAAGGGAGGAAACATCTCCATCAAGGGTTGGTTTGGGGAGTGGGTGACGG
AATGACCACTGAGATATGGCATTATCAGTGGATCGGGGTCACCACTACTATGAAACCATTGTGCACCCTATTGAATGACC
TAGTGTAGTTAGTGGTTGATTTATTGGACGAGGATACCGGTCAACGGAATACCGACTTGGTTAGGAAAATTTTCATTACA
CCAGATGTGGAAGCAATACTGAATCTCCC-AAGACCAATGTCACCTAGCAAGAATTACTGGGCATGGGCATGTCAGAGGT
CTGGATATTTCATAGTCAAATCAGTACATTGAGAACTGGAAAATTTGCAGTATAACTCTCAGATCACTCCAGGGAGTTCT
TCTTGGGGGGGGGGAGGGAGTTCGCGTGTAATTTGGAAGTTGTGTGTCTAAGCCAAGACCAGGGTGTTCTGGTGGCGGCT
GTTGAAGGGATACTTACTGGCTAATGTGGAACTCTTACGGTGACACGTATGTGAAGATCAGACATGTATGATGTGTGGAC
ACATCGACGAGTCTCTATTACATGCACTA---------------------------------------------------
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>chr3B_1705
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---------------------------------------------------CCACTTTTTCTTCGGTACAACCCCCCTAA
ACACATCAACGCACGAGATTTCTTCGTACCCCTTTATTATAAAGAGTAGGATGGTCTTTTTTAAAATAC-----------
--TATATAGCGTTGGAGACACCCCTCGACTGGGCCGGCCCATTGATAAAAGGCTGCAG----------------------
-----------------------GGAGCGCGACCCGAGATGTAAAAATTCACAAAATACATGCCACTG------------
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---------------CTAAGAATTGAACCACAGACCTCTTACACATGAAGTTTAGTCACTCACCAATTGAGCCGACTAAT
GTTTGTGAATAATTATGAGAGTGCAAACTTAAGAATCTCTCCGGACGGATTTATCGGGCCTATGAGCCGATATGGGAAGG
CCACGAAAAACGCACGGAAGAAATTGGAAAT-AAATCTC--AACTAATCATCGTTATTAATTAGGCCTATTAACTAACCT
GTGC-----ATGCAATGGCTACTGCCTGATCCAATCAAGAAGACCCATGCGCTAGCTTCCATAGAGAGACGAGGGAATGA
AGGGACGTGCTTAAATGCAGCAGCCTTT--TTTTTTTTTTGATAAACTATGCAGCAGCCTAGTAAACATGGTA--CAAGT
TTTGGTGCCTCTCAGACCCGATAAACCTTAGTGGAGGGAGTAACACAAAGGAAATTATGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAATCCAACTTTTTGTAAACCA
>chr6B_1706
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----------------------------------------------------CACTTCTTCTTCGGTACAA-CCCCCTAA
ACACATCAACGCACGAGATTTCTTCATACCCCTTCATTATAAAGGGCAGGATGATCCTTTTTAAAATAC-----------
--TATATGGCGTTGGAGACACCCCTCAACTGGGCCGGCCCATTGATAAAAGGCTGCAG----------------------
-----------------------GGAGCGCGACCCGAGATGTAAAAATTCACAAAATACATGCCGCTG------------
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---------------CTAAGAATCGAACCACAGACCTCTTACACATGAAGTTTAGTCACTCACCAATTGAGCCGACTAAT
GTTTGTGAATAATTATGAGAGTGCAAACTTAAGAATCTCTCCGGACGGATTTATCGGGCCTATGAGCCGATATGGGAAGG
CCACGAAAAACGCATAGAAGAAATTGGAAATAAAATCTC--AACTAATCACCGTTATTAATTAGGCCTATTAACTAACCT
TTGCATGCAATG-----GCTACTGCCTGATCCAATCAAGAAGACCCATGCGCTAGCTTCCATAGAGAGACGAGGGAATGA
AGGGACGTGCTTAAATGCAGCAGCCTAA---TTTTTTTGTGATAAACTATGCAGCAGCCTAGTAAACATGGTA--CAAGT
TTTGGTGCCTCTCAGACCCGATAAACCTTAGTGGAGGGAGTAACACAAAGGAAATTATGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAATCCAACTTTTTTTAAACCA
>chr6B_1706
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----------------------------------------------------CATTTCTTCTTCGGTACAACCCCCCTAA
ACACATCAACGCACGAGATTTCTTCATATCCCTTCATAATAAAGGGTAGGATGGTCTTTTTTTTTGAAAGTACGTATGAC
A-----------TGGAGACA-CCCTCAACTGGGCCGGCCCATTGGTG-AAGGCTGCAG----------------------
-----------------------AGAAGGCGACGCGAGATGTAAAAATTCACAAAATACATGCCTCTG------------
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---------------CTAAGAATCGAACCACAGACCT-TTATACATGAAGTTAAGACGCTCACCAGTTTACCTGACTAGT
GTTTGTGAATGGTTCGGAGCGTGCAAACTTAAGAAACCCTCCCCCCGGAATTATTGGGCCCATGAGCCGAAACGGGAAGA
CCACGAAAAACGCACAGGAGAAATTGGAAATAAA-TCTCTTAGCTAATGGCCGGTATTAATTAGGCCTATTAACTAACTT
GTGC-----ATG-----GTTACTGCATGATCCAATCAAGGAGACACATGCGCTACCTTCCATGGAGAGGCTAGTGAATAA
AATGACGTGCTTAAATGCAGCAGCCTAATTA--TTTTTTTGATAAACTATGCAGCAGCCTATTTAACATGGTATACAAGT
TTTGGTGGCTCTTGGACCCAATAAACCTGAATGGAGGGAGCAACACCAAGAAAATTATGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAACCCAACATTTTTTTTGAAC
>chr1B_1706
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----------------------------------------------------CACTTTTTCTTCGGTACAACCCCCCTAA
ACACATCAACGCATGAGATTTCTTCGTACC-------------GGGTAGGATGGTCTTTTTTAAAATAC-----------
--TATATGGCGTTGGAGACACCCCTCGACTGGGCCGGCCCATTGATAAAAGGCTGCAAGGAGCGTGACCCGAGATGTATA
AATTCATTGATAAAAGGCTGCAAGGAGCGTGACCCGAGATGTATAAATTCACAAAATACATGCCGCTG------------
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---------------CTAAGAATTGAACCACAGACCTCTTACACATGAAGTTTAGTCACTCACCAATTGAGCCGACTAAT
GTTTGTGAATAATTATGAGAGTGCAAACTTAAGAACCTCTCCGGACGGATTTATCGGGCCTATGAGCCGATATGGGAAGG
CCACGAAAAACGCACAGAAGAAATTGGAAATAAA-TCTC--AACTAATCACCGTTATTAATTAGGCCTATTAACTAACAT
GTGCATGCAATG-----GCTACTGCCTGATCCAATCAAGAAGACCCATGCGCTAGCTTTCATAGGGAGACGAGGGAATGA
AGGGACGTGCTTAAATGCAGCAGCCTATTTTTTTTTTTTTGATAAACTATGCAGCAGCCTAGTAAACATGGTA--CAAGT
TTTGGTGCCTCTCAGACCCGATAAACCTTAGTGGAGGGAGTAACACAAAGGAAATTATGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAATCCAACTTTTTGTAAACCA
>chr4B_1706
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----------------------------------------------------CACTTATTCTTCGATACAACCCCCCTAA
ACACATCAACGCATGAGATTTCTTCGTACCCCTTCATTATAAAGGGTAGGATTGTCTTTTTTAAAATAC-----------
--TATATGGCGTTGGAGACACCCCTCGACTGGGCCGGCCCATTGATAAAAGGCTGCAG----------------------
-----------------------GGAGCACGACCCGAGATGTAAAAATTCACAAAATACATGCCGCTG------------
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---------------CTAAGAATCGAACCACAGACCTCTTACATATGAAGTTTAGTCACTCACCAATTGAGCCGACTAAT
GTTTGTGAGTAATTATGAGAGTGCAAACTTAAGAATCTCTCCGGACGGATTTATCGGGCCTATGACCCGATATGGGAAGG
CCACGAAAAACGCACAGAAGAAATTGGAAATAAA-TCTC--AACTAATCACCGTTATTAATTAGGCCTATTAACTAATCT
GTGCATGCAATG-----GCTACTGCCTGATCCAATCAAGAAGACCCATGCGCTAGCTTCCATAGAGAGACAAGGGAATGA
AGGGGCGTGCTTAAATGCAGCAGCCTT-----TTTTTTTTGATAAACTATGCAGCAGCCTAGTAAACATGGTA--CAAG-
TTTGGTGCCTCTCAGACCCGATAAACCTTAGTGGAGGGAGTAACACAAAGGAAATTATGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAATCCAACTTTTTTTAAACCA
>chr3A_1706
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----------------------------------------------------CACTTCTTCTTCGGTACAACCCCCCTAA
ACACATCAACGCACGAGATTTCTTCATACCCCTTCATAACAAAGGGCAGGATAGTCTTTTTTTAAAATACGTCCCGAACA
TGTATATGGGATGGGAGACA-CCCTCAACTGGGCCGGCCCATTGGTG-AAGGCTGGAG----------------------
-----------------------AGAGGGCGACACGAGATGTAAAAATTCACAAAATACATGCCTTCG------------
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---------------CTAAGAATCGAACCACAGACCT-TTATACATTAAGTTAAAAGGCTCGCCAGTTGACCTGACTAGC
GTTTGCGAATGGTTAGGAACGTGCAAACTTAAGAAACCCTCCCCCCGGAATTATTGGGCCCATGAGCCGAAACGGGAACA
CCACGAAAAACGCACAGGAAAAAATGGAAATAAA-TCTCTTAGCTAATCGCCGCTATTAATTAGGCATATTAACTAACAT
GTGCATGCAATG-----GTG-CTGCATGATCCAATCAAGGAAACCCATGCGCTAGCTTTCATGGAGAGACTAGGGAATAA
AGTGACGTGCTTAAATGCAGCAGCCTAA--TTGTTTTTTTTATAAACTATACAACAGCCTAGTAAACATGGTA--CAAGT
TTTGGTGGCTCTTGGACCCAATAAACCCAAATGGAGAGAGTGACACCAAGAAAATTCTGAATGAATTTTTAAAAATTGAA
TAATGTTTCATAATCCAACATTTTTTTTGAAC
>SNPs
SSSSSSSSSSSSSSSSSSS----------------------S-----SS-SSS-S----S-------------------S
---S--------S--S--SS--------------------S---SS----S-----------S--------S--S-----
---S------SS--S----------------S--------SS-------------S-S----------------S-----
---------------SSS--S-------S-S--S----SSSS--SSSSSSSS---------------------S-SS---
---------S---------------------S----------S-S---------S----------------S--------
----------SSSS-SS-------------------------------------------------S---------SSS-
------------------S------------------------S-------------S--------S---------SSS-
----------------------S------------S--S------------S-----S--------S-------------
SSS--S-----S---S------------S--------S------SS----------S-------S---S-----------
-------S--------------------SS----------------S-SS--S----S---------------S------
------------S-----------S-S-----------S--------S---S-----------S------S--------S
---SSS---S--S---------S-----S-------------S-----S---------S----S-----S--------S-
S---S------S------------S-S-------S--S--S----S--S-S-------SS---S------S---------
---S------------S--------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
------S------------------------------S-----------S-----------SS-----------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-------------------------------------S--------------------S------
---S---------------S----------------------S-------------------------------SS----
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-------------------------S--------------S---------------------------------------
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--------------------------S-----
>forward_175
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---------------------------------------------------------------------------TGGTC
CAAACACTACTGGCC-----------------------------------------------------------------
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>reverse_2195
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----------------------------------GGGATTGGAGGGTTTGGAGG--------------------------
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