>input_sequence_70388
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--------------------------------------------ATTCGCCAACCATCACTTGAGCTTGAGAGATAAAGA
AACAGCCGTAGACATACTCCCTCTAGCCTCTAGGCATTTGGAGAGGTAGATAAGAAGTTGCAACCTCCATTGGCAATTCC
ACGAATACATCATTCAGACATAGACTCAGAGTCGTCCATAGGTTCGTCCTACACAGACAAACACAGCCATGGTGGAGGAC
TTCACATGCCCTACCATTCCACCGGTGCCGTGCGGCGCCAAGAAGCTCCCTTCCCCTCACTTCACTTCGCCGCCGCCATG
GTTCGTCGTCCCGGCCGACGCGGGAGCGCACGACCATCACCGGCGGTGCTTCTCGGCCGCCGAGCAAGCCGGGAACCCCA
ACAACGACGTCTACCCGGGGCCGGGGGGCCGCTCCGAGAGGTTCG-----------------------------------
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-----------------------------------------------------------------------------CCG
TCATGGAAGAGCACAAGATGGACATGCTGTGGGAGGACTTCAACGAGGAGCTGGCCCGGGCGCCGCAGCCGTGCCCACTG
AGCATGGAGTGGTCGAGCGAGGCGTGGCACGCTGGTGAAGGCGACGGAATACCATCCCAGCATGTGGATGTGGTCGTCGC
CTCCGGTACCGGGAGCAGCGTGGTCTGGCGAAGGAGGCTGAGCTTGATGATGATGCTCAAGCTGCTCAAGAAGCTCTTCT
TGGCACGCAAGTCCAGCACCACCTCAAGGAAGACGCCACCAAACTGACAGCAGTGTGGATGCGAGAATTATATAGATGCG
TGCATAAA------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G119500
ACCACCCACGCTCTTGGCTACATCGACAAACGACACAAAGGGCTACCGCCTGCTTGAGCAACCTCGTCGGTTTCCACTCC
AGCCACGACTCCGCGATGCATCGACCGTTACGACTGTGGGGGGTGTCCGTCGGCTTTCCTTCGGATTCTTCTCCAGTCTC
ACCGTCTGCGTCGCTACCGTTATGTCTGCGGGGGTGTTGAGTAACGTGATTGTATTAGGAAACATAGGTTAGACTAGGAA
ATATTCTGGCTTGCCTTGTACTCTAAGTAGATCATGTACTCCTATATATATGCCCATGAGGCTCAAGCAATACAAACGAC
AATTCCACCAAATCCCTCCCTCTCTCTTCTAACTCACATCGCTACCCCTAACATCACTACAGTTTATGCTGGAGCTTGCC
TGATTCTGTTTCCCAACCAACACTCCACTTGATTTATTTTAACAGCAAAAA-GAGAAAAAGCTTAGGCCTCCTTTGGTTT
AGAGGAATTTCATAAGAATTTTAAAGGATATGATTCTTATAGGATTTTTTTCTTTAGAGCCCTTTAGTTCATAGGAATGG
ATTCCTATTCCTACATAGGATTGGTTCCTATCCTCCACATTTCATAGGAAAATAAAAAAGAGCCTAAACTCAATGAAAAA
ATTCCTTTGGTGTCAACCAAATGACATCTTGTTTCCTATTCCTACTCATAGGATTTGAGATACATGTCATCTCATTTCCT
ATAAGATTCCTATTTCTATGATAATCCTATCCTATGAACCAAAAAAGGCCTTATTACTTTCAGGCTCAGTTATGTCTGAA
CTGCACATTCTCTAGGGCCCAATAATTTTTGTTGTCATGTCGAGCTCTAGCTGTATATCATGACCTTGGAATGTTGCAAC
TAG---ACATTAACAATTAATTAGTAGGTCCTTTTGTCTTGGTGCTTGCTGATTGGCGTCTCCTGATAGGCCAAGCTAAT
CAAGCCAATTAGCATAAAGCCAACCACCAAATTATAATACTCGCATTCGCCAACCATCACTTGAGCTTGAGAGATAAAGA
AACAGCCGTAGACATACTCCCTCTAGCCTCTAGGCATTTGGAGAGGTAGATAAGAAGTTGCAACCTCCATTGGCAATTCC
ACGAATACATCATTCAGACATAGACTCAGAGTCGTCCATAGGTTCGTCCTACACAGACAAACACAGCCATGGTGGAGGAC
TTCACATGCCCTACCATTCCACCGGTGCCGTGCGGCGCCAAGAAGCTCCCTTCCCCTCACTTCACTTCGCCGCCGCCATG
GTTCGTCGTCCCGGCCGACGCGGGAGCGCACGACCATCACCGGCGGTGCTTCTCGGCCGCCGAGCAAGCCGGGAACCCCA
ACAACGACGTCTACCCGGGGCCGGGGGGCCGCTCCGAGAGGTTCG-----------------------------------
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-----------------------------------------------------------------------------CCG
TCATGGAAGAGCACAAGATGGACATGCTGTGGGAGGACTTCAACGAGGAGCTGGCCCGGGCGCCGCAGCCGTGCCCACTG
AGCATGGAGTGGTCGAGCGAGGCGTGGCACGCTGGTGAAGGCGACGGAATACCATCCCAGCATGTGGATGTGGTCGTCGC
CTCCGGTACCGGGAGCAGCGTGGTCTGGCGAAGGAGGCTGAGCTTGATGATGATGCTCAAGCTGCTCAAGAAGCTCTTCT
TGGCACGCAAGTCCAGCACCACCTCAAGGAAGACGCCACCAAACTGACAGCAGTGTGGATGCGAGAATTATATAGATGCG
TGCATAAATCAATCTCAGGTGTATATATAATATCGCATTCTCGATCGATAAATACATCACTT------------------
---------CTTCTTTTCCCTCGTTTGCGCGGCTCTTCAGAGCCTTGTGCTGCTCAATTCTGGCTATGGGTTCTGTTCGA
TATTATCATGG-TTTGCATGTTCATACCCTCCTTTTCAAAATAGATGACCCAACTTTGTATTAACATTTTGAAACAGAGG
GAGTAGATTGGAAAACATTTCAGATTTCAGAACC-TAAGTTAGTTTGGAAGATTGAAAAGATGATTCACTCTTTCTTCTT
TGGCATTCATCAACCATCATGCAAAACATGGGTAGTGCAGGCACCCACTAACAGTTTAGTGGAAATCATCATGGCAGAAT
TAATCGAGTCACCTATCACAATGGTTTTGCATCTGTGACTTGACATGGCAGCTAAACTCAGAAAGAAGTCAGTTTGAACT
GATGAAAATGGCTTCAAGAGATTCCTCATCTTTCCACAAGGAAATCATCCCATCCTACTAGTGCTAGATTTTGCTAATTT
ATCATAAAGAAACAAAAGCAGCTTTAACGAGATAAAACTTTATTCATGTCAAATACAAAGGATCTCCAAAATACAAACCA
GCCTCACTTGCGTAATTCATACTACTAGTGCTTAAGCGGATGATAAA-CACCCATGGAAGATAAGCAACAAGCTCAGGAA
TGGACATGTGTGGGGGACGCACCAACAAACTGGTTGTGGTTGGTCCCAACTCCCAAGTGGACAGCGAAAAACAGTTGTGC
AGAATGTAATGCACATGTCAGCTTGAGGTCATTTGCAATGCATACCAATCTGCACTTGCTTGGTAGGTATTGCATCACAC
AAGATAAGATTCTATTCTAGTACTTCCTCCGTTCCGAATTACTCGTCGCAGAAATGAATGTATCTAGATGTATTTTAGTT
CTAGATACATTCATTTCTGCGACGAGTAATTTGGAACGGAGGGAGTACAAGCTAAGGTAGTCATGACAGAGTACCGAA
>chr5B_355
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----------------------------------CACATCACTACCCCCAACATCACTACAGTTTATGCTGGAGCTTGGC
TGATTCTGTTTCCCAACCAACACTCCACTTGATTTATTTTAACAGCAAAAA-GAGAGAAAG-------------------
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-------------------------------------------------CTTATTACTTTCAGGCTCAGTTATGTCTGAA
CTGCACATTCTCTAGGGCCCGATAATTTTTGTTGTCATGTCGAGCTCTAGCTGTATATCATGACCTTGGAATGTTGCAAC
TAATAAACATTA------------------------------TGCTTGCTGATTGGCGTCTCCTGATAGGCCAAGCTAAT
CAGGCCAATTAGCATAAAGCCAACCACCAAATTATAATACTCCCATTCGCCAACCATCACTTGAGCTTCAGAGATAAAGA
AACAGCCGTAGACATACTCCCTCTAGCCTCTAGGCATTTGGAGAGGTAGATAAGAAGTTGCAACCTCCATTGGCAATTCC
ACAAATACATCATTCAGACATAGACCGAGAGTCGTCCATAGGTTCGTCCTACACAGACAAACACAGCCATGGTGGAGGAC
TTCACATTCCCTACCATGCCACCGGTGCCGTGCAGCGCCAAGAAGCTCCCTTTCCCTCACTTCACTTCGCCGCCGCCATG
GTTCGTCGTCCCGGTCGACGCGGGAGCGTACGACCATCACCGGCGGTGCTTCTCGGCCACCGAGCAAG---------CCA
ACAACGACGTCTACCCGGGGCCGGGGGGGCGCTCCGAGAGGTTCG-----------------------------------
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-----------------------------------------------------------------------------CCG
TCATGGAGGAGCACAAGATGGACATGCTGTGGGAGGACTTCAACGAGGAGCTGGCCCGGGCGCCGCAGCCGTGCCCACTG
AGCATGGAGTGGTCGAGTGAGGCGTGGCACGCCGGTGAAGGCGACGGAATACCATCCCGGTATGTGGATGTGGTGGCCGC
CTCCGGTACCGGCAGCAGCGTGGTCCGGCGAAGGAGACTGAGCCTGATGATGATGCTCAAGCTGCTCAAGAAGCTCTTCT
TGGCACGCAAGTCCAGCACCACCTCAAGGAAGACGCCACCAAACTGACAACAGTTTGGATGCGAGAATTACATAGATGCG
TGCATAAATCAATCTCAGGTGTATATATAATATCGCATTGTCGATCGATAGATACATCTTTCTGAATCAATCTTCTAGCT
TCTCACTTGCTTCTTTTCCCTCGTTTGCGCGGCTCTTCAGAGCTTTGTGCTGCTCAATTCTGGCTATGGGTTCTGTTTGA
AATTATCATGGTTTGGCATGTTCA--------------------------------------------------------
---TAGATTAGAAAACATTTCGGATTTCAGAACCTTAAGTTAGTTTGGAAGACTGAAAAGATGATTCACCCTTTCTTCTT
TGGCATTCATCAACCATCATGCAAAACATGGGTAGTGCAGGCACCCACTAACAGTTTAGTGGAAATCATCATGGCAGAAT
TAATCGAGTCACCTATCACAATGGTTTTGCATCTGTGACTTGACACGGCAGCTAAACGGACAAAGAAGTCAGTTTGAACT
AATGAAAATGGCATCAAGAGATTCCTCATCTTTCCACAAGGAAATCATCCCATCCTACTAGTGCTAGATTTTGCTAATTT
ATCATAAAGAAACAAAAACAGCTTTAACGAGATAAAACTTTATTCATTACAAATACAAAGGATCTCCAAAATACAAACCA
GCCCCACTTGCGTAATTCATACTACTAGTGCTTAAGCGGATGATAAA-CACCCATGGAAGATAAGCAACAAGCCCAGGAA
TGGATATGTGTGGGGGACGCACCAACAAACTGGTTGTGGTTGGTCCCAACTCCCAAGTGGACAGCGAAAAACAGTTGTGC
AGAATGTAATGCA---GTCAGCTTGAGGTCATTTGCAATGCATACCAATCTGCACTTGCTTGGTAGGTATTGCATCACAC
AAGATAAGATTCTATTCTA-------------------------------------------------------------
------------------------------------------------------------------------------
>chr5D_355
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----------------------------------CACATCACTACCCCCAACATCACTGCAGTTTATGCTGGAGCTTGGC
TGATTCTGTTTCCCAACCAACACTCCACTTGATTTATTTTAACAGCAAAAAAGAGAGAAAG-------------------
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-------------------------------------------------TTTATTACTTTCAGGCTCAGTTATGTCTGAA
CTGCACATTCTCTAGGGCCCAATAATTTTTGTTGTCATGTCGAGCTCTAGCTGTATATCATGACCTTGGAATGTTGCAAC
TAATAAACATTAACAATTAATTAGTAGGTCCTTTTGTCTTGGTGCTTGCTGATTGGCGTCTCCTGATAGGCCAAGCTAAT
CAGGCCAATTAGCATAAAGCCAACCACCAAATTATAATACTCCCATTAGCCAACCATCACTTGAGCTTCAGAGATAAA-A
AACAGCCGTAGACATACTCCCTCTAGCCTCTAGGCATTTGGAGAGGTAGATAAGAAGTTGCAACCTCCATTGGCAATTCC
ACAAATACATCATTCAGACATACACTGAGAGTCGTCCATAGGTTCGTCGTACACAGACAAACACAGCCATGGTGGAGGAC
TTCACATTCCCTACCATGCCACCGGTGCCGTGCGGCGCCAAGAAGCTCCCTTTCCCTCACTTCACTTCGCCGCCGCCATG
GTTCGTCGTCCCGGCCGACGCGGGAGCGCACGACCATCACCGGCGGTGCTTCTCGGCCGCCGAGCAAGCCGGGAAAGCCA
ACAACGACGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCG
TCATGGAGGAGCACAAGATGGACATGCTGTGGGAGGACTTCAACGAGGAGCTGGCCCGGGCGCCGCAGCCGTGCCCACTG
AGCATGGAGTGGTCGAGCGAGGCGTGGCACGCCGGTGAAGGCGACGGAATACCATCCCGGCATGTGGATGTGGTGGTCGC
CTCCGGTACCGGGAGCAGCGTGGTCCGGCGAAGGAGGCTGGGCCTGATGATGATGCTCAAGCT---------GCTCTTCT
TGGCACGCAAGTCCAGCACCACCTCAAGGAAGACGCCACCAAACTGACAGCAGTTTGGATGCGAGAATTATATAGATGCG
TGCATAAATCAATCCCAGGTGTATATATAATATCGCATTGTCGATCGATAAATACATCTTTCTGAATCAATCTTCTAGTT
TCTCACTTGCTTATTTTCCCTCGTTTGCGCGGCTCTTCAGAGCTTTGTGCTGCTCAATTCTGGCTATGGGTTCTGTTTGA
AATTATCATGGTT-TGCATGTTCA--------------------------------------------------------
---TTGATTGGAAAACATTTCAGATTTCGGAACCTTAAGTTAGTTTGGAAGATTGAAAAGATGATTCACTCTTTCTTCTT
TGGCATTCATTAACCATCATGCAAAACATGGGTAGTGCAGGCACCCACTAACAGTTTAGTGGAAATCATCATGGCAGAAT
TAATCGAGTCACCTATCACAATGGTTTCGCATCTGTGACTTGATACGGCAGCTAAACTGACAAAGAAGTCAGTTTGAACT
AATGAAAATGGCATCAAGAGATTCCTAATCTTTCCACAAGGAAATCATCCCATCCTACTAGTGCTAGATTTTGCTAATTT
ATCATAAAGAAACGAAAGCAGCTTTAACGAGATAAAACTTTATTCACTACAAATACAAAGGATCTGCAAAATACAAACCA
GCCCCACTTGCGTAACTCATACTACTAGTGCTTAAGCGGATGATAAAACACCCATGGAAGATAAGCAACAAGCTCAGGAA
TGGACATGTGTGGGGGACGCACCAACAAACTGGTTGTGGTTGGTCCCAACTCCCAAGTGGACAGCGAAAAACAGTTGTGC
AGAATGTAATGCACATGTCAGCTTGAGGTCATTTGCAATGCATACCAATCTGCACTTGCTTGGTAGGTATTGCATCACAC
AAGATAAGATTCTATTCTA-------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------S-----------------------------S-
--------------------------------------------------------S----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
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--S-----------------------------------------------------------------------------
--S---------------------------------------S-------------------------S-----------
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--S-----------------------S-----------------------------------------------------
-------S---------S----------------------------------S---------------------------
---------------------------------------------------------------------------SS---
----------------------------S---------------------------------------------------
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-------S------------------------------------------------------------------------
--------------------------------S-------------------------S---------------S-----
-------------------------S-----------------S------------------------------------
------------------------------------------------------S-------------------------
---------------------------------------S------------------SS-S------------------
-------------------------------------------S---------------------------------S--
S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
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---------------------------------------------S------------S-S-------------------
S-----------S-------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
---S----------------------------------------------------------------------------
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-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_343
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---TCCACCAAATCCCTCCCTCT---------------------------------------------------------
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>reverse_1793
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--------------------------------TGGTGAAGGCGACGGAATAC----------------------------
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>forward_1123
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---------------------------------------------------------------CCTCCATTGGCAATTCC
ACG-----------------------------------------------------------------------------
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>reverse_2993
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--------------------------------GGAACGGAGGGAGTACAAGC--------------------------
