>input_sequence_70378
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------------------------------ATGTCTGCAAGCAGCAGGTTCTTCCTGGCCTTGTGTCTACAACTGCTGCT
CGTGGCCGCGGCGGCCGACGAGCAAGGAGAAGGCTGCCCTGGCTCGGCCAAGAGATGCGGCAACCTCACCGTGTCCGACC
CGTTCTGGCTCGCCGACGAGGAGATCGGCAGATCATGTGGTTCCCCGGACTTCGTGGCCGTCTGCGACAGCAACTTCACC
GGATTTGCTTCTCGGGTTTTACCGAGCGCTATGCCCTTCAGCGACGGCTTTGCAGTCCTCAACATCTCTTACGAGGACCG
CAGCCTGCATGTCATTGATGTGGGCAAGCTGCACGTGCTGCAATTCACCAACAGCTGCCATGTGCCCATCTGGAACAGCT
CCGTCAAACTGCGGCCCTCCTTCAGGATCGACCCCGTCAACCTGAACCTCATCTTCTACAACTGCACCGAGAAGGCCGCG
GCCGCGGCGGTGGCACGTCGTGATCGAGGGCTGGTGCAGACGACGGTGAGGTGTGGGGACGAGTGGGAGGTGCTTGTTCG
CGCGGGAGTACCTTATGACCCGACCTTGAACTACGGCGGCTACGCTTTGGAGGGCTGCAACGCCGTGGTTACGCCGGTGA
TGGGCTCGTCGGCGGG---GGCGAACGCGAGCAACTATGAGCGGCTCATCAGGGGTGGCTTCCGCTTGACATGGCATGAA
CCTCCGCGCCGTGCACGTAAGTTCACCCGACGGATCATCTTTTAG-----------------------------------
--------------------------------------------------------------------------------
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-----
>chr3D_1_TraesCS3D01G047200
ATATTACATGCCAATTGCGAAGGTTGCTTTTTTTTAGCAAAAGAGGGTTTCCCCTCCGATTTCCATTAGAGAAACCATCA
AGTATCCGACAGGTTACAG-----TTCATAAACTGATCCTATTACAGCCCAGACAAAGATCAAAGC------GAAG----
-ACAAGC-AAGGAAATAAA-AACAGGGGAGGCCACTGTCTAA--CAATAGGCACTCGAA-CTACTTCT-AAACAGTTTT-
--------GCTTAGCAGCACACCCAGGCATCAGCATCTTGATCCGATTC----GCCAAAAGAGAAGACTT-CCT------
TCACTACTGAATTCGAAGCACGCCAAAACGCCACCCTTGCGTCGCCTTGTAAACATCACTTGCTACTTGCTCGATGAGTC
TTGCTCTCAGCATCAACATTCTTTCCTCTGGGTCCTTTCTCTGCAAAATAGCCCAATCAGAAATCCAACCACACATCATT
TTC-ACAATTTCCATTGGGTCAGTAATATTTTTTTTCTATCAAAGACAATATCATTTCTACATCTCCAGATCGCCCATAA
AAGAGCTGAAGTACCAACCAAGATCAGTTTCTTGTTATCTGTTTGGAAATT-TTTTAGCCAGTTCCCAAGGCAGTCACTG
AGATCTCTAGGAGTATTTGTGAAGGTTGTACAAAGATCATAATCAACTCCTTAGCAAACAAGAGGGCAAAGTAGCTCGAA
CCTAAAAATGATCGGGCAAAACATCCTGGTTCCAGTCACATCACGGGTTCATGGTAGTCATGGTCATGGCTCAATCCGTC
AAAGTCGTTACACGGCCCCGCAAAAGGAAAAAA--------------ACGGAAATTTCAGTAGTCACTGCCTACCAGTCC
AAGGTTTCAGTTCGGGAACTTCGTGTAGC--GTATGATTCGCTTGCCC----------GTCAAATGTTCCGGCCACTAGT
AGTCTAGTCGTCGCGCTGGGCGCCTCCATATATCTTCCCTCCTTCCACCACGTAGTACACCTCAAAAGTCCCCGTAGCCC
TTTGTCCATCTTCCAAAAGCTTCTGCTCCGATGTCTGCAAGCAGCAGGTTCTTCCTGGCCTTGTGTCTACAACTGCTGCT
CGTGGCCGCGGCGGCCGACGAGCAAGGAGAAGGCTGCCCTGGCTCGGCCAAGAGATGCGGCAACCTCACCGTGTCCGACC
CGTTCTGGCTCGCCGACGAGGAGATCGGCAGATCATGTGGTTCCCCGGACTTCGTGGCCGTCTGCGACAGCAACTTCACC
GGATTTGCTTCTCGGGTTTTACCGAGCGCTATGCCCTTCAGCGACGGCTTTGCAGTCCTCAACATCTCTTACGAGGACCG
CAGCCTGCATGTCATTGATGTGGGCAAGCTGCACGTGCTGCAATTCACCAACAGCTGCCATGTGCCCATCTGGAACAGCT
CCGTCAAACTGCGGCCCTCCTTCAGGATCGACCCCGTCAACCTGAACCTCATCTTCTACAACTGCACCGAGAAGGCCGCG
GCCGCGGCGGTGGCACGTCGTGATCGAGGGCTGGTGCAGACGACGGTGAGGTGTGGGGACGAGTGGGAGGTGCTTGTTCG
CGCGGGAGTACCTTATGACCCGACCTTGAACTACGGCGGCTACGCTTTGGAGGGCTGCAACGCCGTGGTTACGCCGGTGA
TGGGCTCGTCGGCGGG---GGCGAACGCGAGCAACTATGAGCGGCTCATCAGGGGTGGCTTCCGCTTGACATGGCATGAA
CCTCCGCGCCGTGCACGTAAGTTCACCCGACGGATCATCTTTTAGTCAAGTTTGTAGCTTAGCTAGGC---------CCC
TTGCTTGGATTTCCCCTTTATTGACCC--AAGCCATCAATCATGCATCATGCATTCATGGGAAGGGGTGTGTGCCCGGTT
GGAAAATGCATCATGCATTCATGCTAGTAGTCACTAA---AGGATAATGCTGAAGTTGATC-------------CGCAGC
CGGGCAGCGAGGTACTAGCTTCCTGCCCAAGTTGTGGGGTGATAGACGACCATAGCCTATGCTAGCCAAATTGGTATAAC
CCCTTTTCAAAAAGAAAGTTAGAT-TTTCTCTCATATATTTTTTTGCGGCACTATGGCATATTAGGGGATCTCCGACACA
AGTCACTGAATCTCCCCCATATGTCCGCAGGACAAAAAAC-------------TGGCTCATCAAATTTGTCCGGACCGTA
TGGATCTCCTTGTTCGCCCCCAAGTCGGGAGGAGCTCTAGGGGAGGCCAGACAGTCGACGGACACCGTCAACTCAGTCTT
GGACA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CCATCACAAATCCACTTTTTTATAAAAAAAAACTGACC
ATTCTACAGGATTTGCTATTACTAAGTTGGTTGAGAAGTTATGATTTTTCAAATGCTAAGGCTTGAAAAAAAAAGGGTGT
AATGCCTACAAAAAAGAAGGTTAGAGGGCTGTTATCTGCCAAGTGTGTAGGTTGCACAAATATCAGAATCTACTCATCAG
CAAACAAGAGCACAAAGTAGGCCGAACTTAAATGATCAGGCTAAGCATTCTGTTTCCAAGTCACA--TCACTAGTCCACG
GGGTCATTGTCATGGCTTACTCCGTCAAAGTCGTTACACGCAAATTTCAGAAGCCATGGCTTACTAGTCCATGGCGTCAT
TATTGTGAAACTTCCTGGACGGTGATCGCTTGGCCCCCGTTTGCAGTCAACTGTACCCCGCTCGTTCGCCACGCCACATA
TGTGGTTCAAGCTTCGACCACAGTAGTGCCTCCCTTCATCGTTCATTCACCACAATCTCTCCCAAACTTCTGCTCCGATG
TCTCC
>chr4A_24
TTGTT------------------------TTTTTGAGCAAAAGAGGGTTTCCCCTCCGATTTCCATTAGAGAAACCATCA
AGCATCCGATAGGTTACTG-----TT-ATAATCTGACCGTAATACAACCCAGACATAGTTCAACGC------GAAG----
-ACAAGC-AAGA----AAATAAAACAGGAGGCCACTGCCTAA--CAGCAGGCACTCGAA-CAAG-TCT-AAGAGA-TTAG
AGGCTCCAGGTGAGCAGCGCGCCCAGGCTTCATTGTCCTGATCCGAACC----AA------AAGAAGCTT-CCT------
TCACTGCTGAATTCGAAGCATGCCAAAACGCCATCCTTGCGCCGCCTTGTAAATATTTCTTGCTACCTGCTCCATGAGTC
TTGCTCCCAGCGTCAACATTCTTTCCTCTGGGTCATTTCTCTACAAAATAGCCCAATCAGAAATCCAACCACACATCATT
TTTTACAATCCCCATTGGTTGAGTTGTC--TCTTTTCTATCAAAGACAATGTCATTTCTACATCTCCAGAATGGCCATAA
AAGGGTTGAAGTGCCAACCAAGATCAGCTTCTTGTTATCTGTCTAAAT-TTTTTTTAGCCAATTCCCAAGACAGTCATTG
AGATCTCTAGGAGTATTT--------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr5B_28
---------------------------TTTTTTTTATCAAAAGAGAGTTTCCCCTCCGATTTTCATTAAAGAAACCAGCA
AGCATCCGACAGGTA---------TTCATACATTGATCCTCTTACAGCCCAAAGATAGATCAAAGC------AAAGCAGA
GACAAAC-GGAGAAATGAA-AAACAGGGAGGCCACTGTTTTAGACAGCAGGCACTCGAA-CTACTACAGAAATGA-TAT-
--------GCTGAGCCACCCGCCCAGGCTTCCACATCCTGAGCCGAAAC----ACCAAAATAGAGT-CTC-CCT------
TCACTGCTGAATTTGAAGAACGCCAAAACGCCACCCTTGTGTCGCCTTATAGACATCACTTGCTACTTGCTCGATCAGTC
TTGCTCCCAGCATTAACATTCTTTC-TCTGGGTCCCCTCTCTGCAAAATAGCCCAATCAGAAATCCAACCACACATCGTT
TTC-ACAATCCTCATTGGGTCAGAAATC--TTTTATCTATCAAAGACAATATCATTTCTACACCTCCAGATCGCCCATAA
AAGTGCTGAGGTGCCAACCAAGATAAGCTTCTTGTTATCTTTCTGGAAAAAAA-TTAGTCAACTCCCAAGGCAGTCATTA
AGGTCACTAGG---------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>chr7A_28
TTTTTT--------------------------TTGAGCAAAAGAGGGTTTCCCTTCTGATTTCCATTAAAGAAACCAGCA
AGTATCCGACAGGTTCCAC-----TTCATAAACTGACCCTATTACAACACAGGAAAAGTTCAGGGC------AAAG----
-ACAGGC-AAAGAAATATA-ACCAAGGAAGGCCACTGCCTAA--CAGCAGTCCCTCGAAACTACTACT-AAGCGA-TCTA
GCTTCTGAAACAGC---CCACGCCATGCTTCAAACATCTTGGTCGAATCTTTCACCAAAAGAAGCCACTT-CCA------
TCACTGCTGAATTCGGAGAACGCCAAAACGCCACCCTTGCGCCGCCTTGTAGACATCACTTGCTACTTGTTCGATGAGTT
TTGCTCCCAGCATCAGTATTTTTTCCTTTGGGTCCTTTTTCTGCAAAATAGCCCAATCAGAAATCCAACCACATATTATT
TTC-ACAATCCCCATGGGATCAGTAATC--TTTTTTCTATCAAAGATAATGTCATTCCTACACCTCCAAATCACCCACAA
AAGGGCTGAGGTGCCAACCAAGATCAACTTTTTGTTATCTGTCTGAAT-TT-TTTTAACCAGTTCCCAAAACGATCATTG
ATATCTCTAGGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>chr2B_28
---------------------------TTTTTTTGAGCAAAAGAGGGTTTTCCCTCCGATTTCCATTAGAGAAACCATCA
ATCATCCGAACAGTCACAGCGTTT---------TAAACATGCTACAAACCA--------TCAT---TTGACGAAAG----
-ACAACA-AGGA----AAATAAAC--GAAGGACACTGCCCAA--CACTAGGCA-TCTAA-GCGG-ACT-AAGCTA-TCAC
AAGCTTCAGGGT-------------------------------------------------AAGCAGCGT-CTT------
TCACTCCTGAAGTCGAAGCACACAAAAACGTCATCCTTGCGCCGCCTTGTAAACTTCGATTGCTACTTGCTTGATGAGTT
TTGCCCCCAGCATCAGTGTTTTTTCCTTTGGGTCCTTTTTCTGCAAAATAGCCCAATCAGAAATCCAACCACACATTATT
TTC-ACTATCCCCATTGAGTCAGTTATC--TTTTTTCTATCAAAGACAATATCATTTTTGCATTTCCATATTGCCCATAG
AAGAGCAGAGGTACCAACCAGGATCAACTTTTTGTTATCAGTTTGGAAATT-TCTAAGCCAATTTCCAAGGCAGTCATTT
AGGTCTCTAGGAATAT----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>chr7B_29
----------------------------TTTTTTGAGCAAAAGAGGGTTTCCCCTCCGATTTCCATTAGAGAAACCATCA
AGCATCCAACAGGTTACAG-----TTCACAAACTGATCCTATTACAGCCTAGACATAGATCAAAGC------AAAG----
-ACAAGC-AAGA----AAA-AAAACAGGAGGCCACAGTCTAA--TGGCAAGCACTCGAA-CTACTTCT-AAACGA-TTT-
--------GTTGAGCAGCACGCCCAGGCTTCAACATCCTGAGCTGATTC----ACCAAAAGAGAGA-CTTCCTT------
TCACTGCTGAATTCGAAGCACGCCAAAACGCCACCCTTTTGTCGCCTTGTAAACATCACTTGCTACTTGTTCGCTGAGTC
TTGCTCCCAGCATCAACATTCTTTCCTCTGGGTCCTTTCTCTGCAAAATAGCCCAATCAGAAATCCAACCACACATCATT
TTC-ACAATCCCCATTGGGTCAGTAATC--T-TTTTCTATCAAAGACAATATCATTTCTACATCTCCAGATTGCCCATAA
AAGGGCTGAAGTGCCAACCAAGATCAACTTCTTGTTATCTGTCTGGATTTT-TTTTAGCCAGTTCCCAAGACAGTCACTG
AGATCTCTAGGAGTAT----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>chr4B_29
----------------------------TTTTTTTAGCAAAAGAGGGTTTCCCCTCCGATTTCCATTAAAGGAACCATCA
AGCATCCGACAGGTTTACCACCGATA-ATATACTAATCCTATTACAACCCAGAGAAAGATCAAAAATAAAGCAAGG----
-ATGACAGAAAGAAATGAA-AACCAGGGAGGCCACTGTTTTAGACAGCAGAGACCCCAA-CCACAACAGAAACGAAAAT-
--------GCTGAGCCGCCTGCTCAGGCTTCCACTTCCTTAGCC------------AAAACAGAAGATCTTCTTTTTTAG
TCACTTCTGAATCCGAAGAACTCCAAAACTCCACCCTTGTGTCGCCTTGTAGACATCACTTGCTACTTGCTCGATGAGTT
TTGCTCCCAGCATCAACATTCTTTCCTCTGGATCCCTTTTCTGCAAAATAGCCCAATCAGAAATCCATCCACACATCAGT
TTC-ACAATCCCCATTGGGTCAGAAATC--TTTTTTCTATCAAATACAATATCATTCCTACATCTCCAGATCGCCCACAA
AAGTGTTGAGGTGCCAACCAAGATAAGCTTCTTGCTATCTTTTTGGAAATT-TTTTAGCCAATCCCCAGGGCAATCATTA
AGGTCTCTAGGGGTAT----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>chr4A_30
-----------------------------TTTTTGAGCAAAAGAGGGTTTCCCCTCCGATTTCCAT--------------
--CATCCCACAAGTTTACCACCGATA-ATATACTGATCCTATTACAGCCCAGAGAAAGATCAA---TAAAGCAAGG----
-ACGACAGAAAGAAATGAA-AACCAGGGAGGCCACTGTTTTA-ACATCAGAGACTCCAA-CCACAACAGAAACGAAAAT-
--------GATGAGCCGCCTGCTCAGGCTTCCACTTCCTTAGCCGAAAC----ACCAAAAGAGAAGAACTTCTTTTTTTG
TCACTGCTGAATTCGAAGAACTCCAAAACGCCACCCTTGCGTCGCCTCGTAGACATCACTTGCTACCTGCTCGATAAGTT
TTGCTTCCAGCATCAACATTCTTTCCTTTGGGTCCCTTTTCTACAAAATAGCCCAAACAGAAATCCATCCACACATCAGT
TTC-ACAATCTCCATTGGGTCAGAAATC--TTTTTTCTATCAA-TACAATATCATTTCTACATCTCCAGATCGCCCATAA
AAGCGCTGAGGTGCCAACCAAGATAAGCTTCTTGCTATCTTTATGGAT-TT-TTTTAGCTGATTCCCAAGGCAGTCATTA
AGGTCTCTAGGGGT------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chrUn_666
--------------------------------------------------------------------------------
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---------------------------------------------------------------------AGTAGCCTGAA
CCTA--AATGATCAGTCCAAGTATCCTGGTCTCAGTCACATCACGGGCTCATGCTGGTCATGGTCATGGCTTAATCCGTC
AAAGTCGGTACACGGCCCCGCAAAAGGAAAAAAAAAGAAGTAATCACACGGAAATTTCGGCAGTCACTGCTTACCAGTCC
AAGGTTTCAGTTGGGAAACTTCGTGTAGCTAGTATGATTCGCTTGCCCCAGCTTTCCAGCCAAATGTTCCGGCCACTAGT
ACTCGGCGCGTTC-----GGCGCCTCCATATATCTTCCCTCCTTCCACCACGTAGTACACCCCAAAAGTCGCCGTAGCCC
TTTGTCCATCTTCCCAAATCTTCTGCTCAGATGTCCGCAAGCTGCTGGTCCTTCCGGGCCTTGTGGCTACCACTGGTGCT
GATGTCCGCGGCGGCCGACGAACAAGGAGAAGGCTGCTCTGGCTCGGCCAAGAGATGCGGCAACCTCACCATGTCCGACC
CGTTCTGGCTCGCCGACGAGGGGATCGGCAGATCATGTGGTTCCCCGGACTTCGTGGCCGTCTGCGACAGCAACTTCACC
GGATTTACATCTCCGGTTTTACGGAGCGCTATGCCCTTCAGCGACGGCTTTGCAATCCTCAATATCTCTTACGAGGATCG
CAGCCTGCATGTCATTGATGTGGGCAAGGTGCACGTGTTGCAAGTCGCCAACAGCTGCCATGTGCCCATCTGGAACAGCT
CCGTCAAACTGCGGCCCTCGTTTAGGATCGACCCCGCCAACGTGAACCTCATCTTCTACAACTGCACGGAGGTGGCTGCG
GCGGCGGCCGTGGCACGTAGCGATCGAGGGCTGGCGCGGACGATGGTGAGGTGTGGGAACGAGTGGGAGGTGCTTGTTCG
CGTGGGAGTGCCTTACGATGTGACCGGGAACTACGGTGGCTATGCTTTGGGGGGCTGCCATGCCGTGGTCACGCCGGTGA
TGGGCTCGTCAACGGG---GGCTAACGCAAGCGACTATGAGCGGCTCATCGGGGATGGCTTCCTCTTGACATGGCTTGAA
C-------------------------------------------------------------------------------
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>chrUn_666
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---------------------------------------------------------------------AGTAGCCTGAA
CCTA--AATGATCAGTCCAAGTATCCTGGTCTCAGTCACATCACGGGCTCATGCTGGTCATGGTCATGGCTTAATCCGTC
AAAGTCGGTACACGGCCCCGCAAAAGGAAAAAAAAAGAAGTAATCACACGGAAATTTCGGCAGTCACTGCTTACCAGTCC
AAGGTTTCAGTTGGGAAACTTCGTGTAGCTAGTATGATTCGCTTGCCCCAGCTTTCCAGCCAAATGTTCCGGCCACTAGT
ACTCGGCGCGTTC-----GGCGCCTCCATATATCTTCCCTCCTTCCACCACGTAGTACACCCCAAAAGTCGCCGTAGCCC
TTTGTCCATCTTCCCAAATCTTCTGCTCAGATGTCCGCAAGCTGCTGGTCCTTCCGGGCCTTGTGGCTACCACTGGTGCT
GATGTCCGCGGCGGCCGACGAACAAGGAGAAGGCTGCTCTGGCTCGGCCAAGAGATGCGGCAACCTCACCATGTCCGACC
CGTTCTGGCTCGCCGACGAGGGGATCGGCAGATCATGTGGTTCCCCGGACTTCGTGGCCGTCTGCGACAGCAACTTCACC
GGATTTACATCTCCGGTTTTACGGAGCGCTATGCCCTTCAGCGACGGCTTTGCAATCCTCAATATCTCTTACGAGGATCG
CAGCCTGCATGTCATTGATGTGGGCAAGGTGCACGTGTTGCAAGTCGCCAACAGCTGCCATGTGCCCATCTGGAACAGCT
CCGTCAAACTGCGGCCCTCGTTTAGGATCGACCCCGCCAACGTGAACCTCATCTTCTACAACTGCACGGAGGTGGCTGCG
GCGGCGGCCGTGGCACGTAGCGATCGAGGGCTGGCGCGGACGATGGTGAGGTGTGGGAACGAGTGGGAGGTGCTTGTTCG
CGTGGGAGTGCCTTACGATGTGACCGGGAACTACGGTGGCTATGCTTTGGGGGGCTGCCATGCCGTGGTCACGCCGGTGA
TGGGCTCGTCAACGGG---GGCTAACGCAAGCGACTATGAGCGGCTCATCGGGGATGGCTTCCTCTTGACATGGCTTGAA
C-------------------------------------------------------------------------------
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>chr3A_790
--------------------------------------------------------------------------------
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-----------------------------------------------ACGGAAATTTCAGAAGTCACTGCTTACCAGTCC
AAGGGTTCAGTTCGGGAACTTCGTGCAGGATTA--------CTTGCCCCAGTTTTCTAGTCAAATGTTCCGGCCACTAGT
ACTCGGCTCGCCC-----GCCGCC-CCATATATTGTTCGTCCTTCGACCACG-----CACACCCCAAGTCCCGGTAGCCC
ATGACCACCGATCCAAAA------------ATGTCTGCAAGCAGCAGGTTCTTCCGGGCACTGTGGCTACCACTGCTGCT
CGTCGCCGCGGCGGCTGACGAACAAGGAGAAGGCTGCTCTAGCTCGGCCAAGAGATGCGGCAACGTCACCATGTCCGGCC
CGTTCTGGCTCGCCGACGAGGAGACCGGCAGATCATGCGGTTCCCCGGACTTCGTGGCCGTTTGCGACATCAACTTCACC
GGATTTGCTTCTCCGGTTTTACGGAGCGCTATGCCCTTCAGCGACGGCTTTGCAGTCCTCGATATCTCTTACGAGGACCG
CAGCCTGCATGTCATTGATGTGGGCAAGCTGCACGTGTTGCAAGTCGCCAACAGCTGCCATGTACCCATCTGGAACAGCT
CCGTCAAACTGCGGCCCTCGTTCAGGATCGACGCCGCCAACCTGAACCTCATCTTCTACAACTGCACGGAGAAGGCTGCG
GCGGCGGCCGTGGCACGTCGTGATCGACGTCTGGCGCGGACGACGGTGAAGTGTGGGAACGAGTGGGAGGTGCTTGTTCG
CGCGGGAGTGCCTTACGATGCGACCGGGAACTACGGCGGCTACGCTTTGGAGGGCTGCCACGCCGTGGTCACGCCGATGA
TGGGCTCGTCAGCGGG---GACGAACGCGTGCGACTATGAATGGCTCATCAGAGGTGGCTTCCTCTTGACATGGCATGAA
CCTCCTCGCCGTGCACGTAAGTTCACCCGACAGATCATCTTTTTATCAAGTTCGTAGCTTAGCTAGGTCATGGGGTGCCC
TTGCTTGGATTTCCCCCTTATTGACCTATAAGCCATCAATC---------------------------------------
-----ATGCATCATGCATTCATGCTAGTAGTCACTAACCGAGGATAATGCTGAAGTTGATCGTCGCCAATGGTCCGCAGC
CGGGCAGCGAGGCACTTCCTA----CCCAAGATGTGGGGTGATGGACGACCATAGCCTATGCTAGCCAACTTGATATAAC
CCCTTTTCCAGAAGAAAGTTAGATATTTCTCGCATATAATTTTT--CGGCATTGTGGCATATTAGGGCATCTCCAACAGA
AGTCATAAAATCTCCCCCATATGTCCGCCGGACAAAAAGAATGTCATCCAACATGGCTCATCAAATTTGTTCGGACAGTA
TGGATCCCCTTGTTCGCCCCCAAATCGGGAGGAGCTCTAGGGGAGGCTGGACAGTCC-CGGAAACCGTCAACGTAGTCTT
GGACGGTTGGACCCCAAAAATGCTAGACATACAAAGACTTACACGCTTTTACACGCTCCTATCATCTAACAACCAATCAC
AAACCTCTCCCCCCTTGATTTTCAGGGGGGTGGGCCGCCCCGCTCACCTATTGACCAATCAAGATTAACCATCTTGTAAA
AGCCTGTAAATCGTTTGTACATGTAGCATTGCTGGTTGGACCCCATCACAAATCCACTTTTCTTATAAAAAAAACTGACC
ATTCTACAGGATTTGCTATTACTAAGTTGGTTGAGAAATTTTGA-TTTTGAAATGCCAAGGTTAGAAAAAAAAATGCCTT
---------AAAAAGGAAAGTTAGAGGGCTGTTATCTGCCAAGTGTGAACGTTGCACAAATATCATAATCTACTCATCAG
TAAACAAGAGCACAAAGTAGGCTGAACTTAAATGATCAGGCTAAGCAATCTGGTTTCAAGTCACACATCACTAGTCCACG
GGGTCATTGTCATGGCTTACTCCGTCAAAGTCGTTACACGCAAGTTTCAGAAGCCATGGCTTACTAGTCCATGGGGTCAT
TAGTGTGAAACTTCCTGGACGGTGATCGCTTGGCCCCCATTTGCAGTCAACTGTACTCCGCTCGTTCCCCACGCCATATA
TGTGGTTCAAGCTTCGACCACAGTACTGCCTCCCTTTATCGTTCATTCACCACAATCTCTCCCGAACTTCTGCTCCGATG
TCTCC
>chr3A_1092
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------GCTCAGCCAAGAGGTGCGGCAACCTCACCATCTCTGACC
CATTCTGGCTCTCTGACCAGGAGGCGGGAAGATCGTGTGGTTCCCAGGACTACGAGGTCGCTTGCCAAAACAA-------
-----TGGTTTTCCAGGTCTACGGAGCTCTGTACCTTCGAGCTCCGGCTTTGGAATCATCGATATCTCTTATGAGGAAAA
CAGTTTGCGCGTGGTTGATCGAGGCCATCTGGAATTACTGCAAGCCTCCAACAGCTGCCAAGTAATGATATTTAACACCT
CCGTCAAACTGGCCGAACCTTTTAGGATCGACCCTGGCAACCTGAACCTCATCTTGTACAACTGCACGGAGGAGGCAGCG
GTTGCGGCTGCGGCACGCCGGGACAGAGACCTGATGCAGACGAGCCTGAGATGTGGGAACGAGAGCAAGATGTTTGTTCG
CACGGGAGTGCGTTACGACGCGACCGGGAACTATGGCGGCTACGCTTTGGAGGGCTGCAACGCTGTGGTCACTCCGGTGC
TTGGCTCATCGTCGGGCCAGACGAACGCGTCCGACTACATGCAGCTCATCAACGATGGCTTTCTCTTGACATGG------
--------------------------------------------------------------------------------
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-----
>SNPs
S-S--SSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------S---------------------S--------------------------SSS----
--------------------S-------S---S----S---------------S--------------------------
-----S--------------------------------------------------------------------------
------S-------------------------------------------------------------------------
---------S-----------------SSS--------------------------------------------------
---------------------------S----------------------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS---
----SS-------S-S-S--SS--------SS---------------S-----S-S---------------S--------
-------S----------------------------------------------------S---------S---------
--------------------------------------------------------------------------------
-S--SSS-----SSSSSS-------------------------------------------S------------------
------------------S---------S--------------------------S---------S----S---------
---------------------S---------------S--------------------------------S---------
--------------------------------------------------------------------------------
-------------S--------S---------------------------------------S-----------------
-------------------------------------------S--S---------------------------------
-------------------S----------------S------------------------------S--------S---
--S-----S------------------------------------------------S----------------------
---------S-----S---S-----SS------------------------------------------S----------
--------------------------------S------------------------------S----------------
-----S-------------------------S-----------SS-------S--------------S------------
----------------S---------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------------------
------------S---SS--SSSSS------S-----------S-------------------------S---S------
--------S-S--------------------S------S-----SS-----S-S-------------S------S---S-
-----SSS--------------------S---------SS------------------------------S-----S---
------S----------------S-----------------------SS-------SS----S---------SS------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S-SSS--------------
-------------------------------------S--S---S----S------S----S-S----------S-SSS-
SSSSSSSSS-----S---S----------------------------S-S---------------S--------------
S---------------------S------------------------S----S--S------------------------
-------------------------------------------S------------------------------S-----
--S-----------------------------------S-----------------S----------S--------S---
-------------------------S----------S--------------------------S----------------
-----
>forward_768
--------------------------------------------------------------------------------
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----------------------------GTTCCAGTCACATCACGGGT--------------------------------
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>reverse_2986
--------------------------------------------------------------------------------
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-------------------------GTGCCTCCCTTCATCGTTCA-----------------------------------
-----
