>input_sequence_70375
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------------------------------------------------------ATGGCGCCTAGAGCGGCGGAGAAGGC
GCCTGTCTCCCCGCCCACCAGGCTCGGCCTTGGCGTTGGCGGCGGGGTCGGAGTCGTCGCCGGTGGCGCGCACTACAGGG
GCGTCCGGAAGCGCCCATGGGGACGTTACGCCGCGGAGATCCGTGACCCGGCCAAGAAGAGCAGGGTCTGGCTCGGCACG
TACGATACGGCGGAGGAGGCCGCGCGCGCCTACGACACCGCCGCGCGCGAGTTCCGCGGCGCCAAGGCGAAAACTAACTT
CCCGTTCCCTTCGTCGTCGTCGTCGTCCCCTGTCGC---------CGGCG---GCGGCAGCCCGAGCAGCAACAGCACCT
TGGACTCTAGCGGGGGAGGGAGCGGCGGCTGCGCCCAGGCGCCCATGCAGGCCATCCCGCTGCCGCCCGCCCTCGACCTG
GACCTCTTCCACCGCGCGGCGGCCGTGACGGCCGTCGCCGGCGGCGGCATGCGCTTCCCGTTCAACGGTTACCCGGTGGC
ATCGCGCCAGCCTCTGCACCCGTACTTCTTCTACGAACAGGCCGCGGCCGCCG---CGGCGGCGGCGTCGGGGTATCGCG
CGCTGAAGGTGGCGCAGCCGGTCACCGTGGCGGCCGTTGCCCAGAGCGACTCCGACTCCTCGTCGGTCGTTGATCTGTCC
CCGTCGCCCCCCGCGGTGACAGCGCATAAGGCGGTCACGTTTGATCTGGATCTGAACGGGCCGCCGCCTTCGGAGGACTA
G-------------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G357500
AAAGAGCTTCATACTTATGTCATCAGGAGATTTGACGAGTACGCTTATGGAATCGTAATTTGATGATACATGATTGTTGA
GAACATTTTCAAGCGAAAGTGCTTCCCGAACATTCGTCAATACAACATTGTAGATGAAAGGTTACAACATTGGCTTAGTT
TGTCAACTT----AACAACCAAAGCCCGTGAAGGACACACATGATAATTGCACATCTTTGTTTATCTAGAAGTTACATGT
TATAAATTTTAATTTTCTAAAAAAATCTTCAAAAAATATATTTTTAAACATAATCATCACAATACTCCCTCCGTGCATTA
ATATAAGAACTTTTAGTTATTTCAAAATATCGATTACATAAATACTAAAATGAATGAACAGACATATAAAATATGTCTAG
CTACATACGAATTAAGTAAAAGCTAAAAGGTTTTATATTAGGGAAAATGGGAGTAGTTGACAAGACATGATAAAGTAAAT
TATAGGGAAATAAAGCAAAAAAGAATCCATACACTCATCG----------------------------------------
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---------------------------------------------TTGAAATGTTATCTAAACAAATAATGTAGAGTATT
TTTTGCAAGAAAAATGACTTTGCGAGGCTAGAATGGAAATGACCAGCAAACTAAGGGTATGGCAACGCAAAGTACATCCG
TTCCCTGGCATCCAGCAAACATTGTGCAAATTTAAACTCTGGCGGTGGGCTAAACAGAAAAGGGGCCGCTCGCCTAATTT
AGTGCCGCCACGCCGAAGACGAGTGGGGGGGCGGCGGCGAGGCGACGCGAGGACAGTCAAACCGCTCGCTGACTGCGCCG
CGTTTTATTCCCTCTCGCCGCTCCCTCCACCGCTCGCTCCCCTTTTCCCCTACTCACTTCCCTTTTTTAACCCCCCGTCC
ATCTATAAATGCCCGTCCCCCTCCTCGCCTTATCCTGGGCGCTACACA-----CCCACCCCACCCCCCTGCATCACCAAA
ACGCCCGAATAACCAAAAAGATACGCGCACGCCACTTGTACACCTGCTGCACCCATGGCGCCTAGAGCGGCGGAGAAGGC
GCCTGTCTCCCCGCCCACCAGGCTCGGCCTTGGCGTTGGCGGCGGGGTCGGAGTCGTCGCCGGTGGCGCGCACTACAGGG
GCGTCCGGAAGCGCCCATGGGGACGTTACGCCGCGGAGATCCGTGACCCGGCCAAGAAGAGCAGGGTCTGGCTCGGCACG
TACGATACGGCGGAGGAGGCCGCGCGCGCCTACGACACCGCCGCGCGCGAGTTCCGCGGCGCCAAGGCGAAAACTAACTT
CCCGTTCCCTTCGTCGTCGTCGTCGTCCCCTGTCGC---------CGGCG---GCGGCAGCCCGAGCAGCAACAGCACCT
TGGACTCTAGCGGGGGAGGGAGCGGCGGCTGCGCCCAGGCGCCCATGCAGGCCATCCCGCTGCCGCCCGCCCTCGACCTG
GACCTCTTCCACCGCGCGGCGGCCGTGACGGCCGTCGCCGGCGGCGGCATGCGCTTCCCGTTCAACGGTTACCCGGTGGC
ATCGCGCCAGCCTCTGCACCCGTACTTCTTCTACGAACAGGCCGCGGCCGCCG---CGGCGGCGGCGTCGGGGTATCGCG
CGCTGAAGGTGGCGCAGCCGGTCACCGTGGCGGCCGTTGCCCAGAGCGACTCCGACTCCTCGTCGGTCGTTGATCTGTCC
CCGTCGCCCCCCGCGGTGACAGCGCATAAGGCGGTCACGTTTGATCTGGATCTGAACGGGCCGCCGCCTTCGGAGGACTA
GACAAAGGACAAATTTTAGATGATGACTGTAGTTTCTCATTTTTCCTGCAGGCAACT-T-----TTTTTTCCTTCTTCTG
TTCTGGTCCTCTTGTATTTTTGTTTAGTTGTCTGAGACAGACCGAGGAGCCTTGTAAATAGTTTTTCCGCCGAGAACAGA
GCAGAACCGATCTGAGATCTGTTGGTCTAAA-CGGATCAAACCGGCGTTGAGGTGAACCGAGACTTGAGTATTATATGTG
TAAGATGAGTGTAGCATGATGAATTTTTCAGAACATAAGTCTCCTATCTATTCCATCTTTTGTGTTCAGAAAGGCAAGAT
TTAGAGCATGCTTGGATACGTTTTAGTCCCATGACTAAAAGTAGTGGGACTAAAACTTGCTAGTCTCACCCATACTTGCT
TGGATCCAAACCCTCCAATCCAGAACTAAGGAGAGGAATTAAATGAGGAGAGAGAGAGCTAATACATATTTTAGTAGGTT
TTTCATGACTAAAAGATTTTAGCCTCAAGACTAGTCCTAGCCTCTCTTTAGTCAGGGGTGCTTGAAACTTTAGCCTCATT
TTTAGTCAGACTCCTTTATATCAAGCACCCTTTTATGGTTGGGAAACATTTATTCGCTAATCGGCGCCGCTCCGTCTCCT
GTAATCAGTTTTGCTGCCATCTCTGCGACACGGCACTGAATGGTTTGGTGAATTGCACGTCTCACTCTGCATGGATGCTT
CTGGGCTCGACTGACCTGAGGCTGAACTGATCAGGAGTAATTGAGCTGGAAGTAACGTGAATTTGCATGTAATTATTGCT
CGCTCAGCTGTCAAATTTGCGGCTTTCAAACCCTTCACACGCTGACAGCTTGGGAGAAAAGGAAAGATGGGTTAGATCTA
--GGGACGGAAAGGGCCAAGCTGCAGTGGGCACGAGAGACAAGTGTGGACGAGGGAGAGAGAGAGATGGCGTGGGAGCGG
TGCGGTGCGGTGGACGGACCGACGATCCGTAGGCGCGATGGAACCGCGAC
>chr3A_1
AAAGAACTTCATACTTATGTCATCAGGAGATTTGATGAGTACACATATGGAACTACAATATGACGATACATGATTGTTGA
GAACATTTCAAGCAAAAGCACTCT-CCGAACATTTGTCAATACAACATTGTAGGTGA--------------GGCTTAGTT
TGTCAAGTATGTGAAAAACCAAAGCCCGTCAAGGGCACGCATGATAATTGTGCATCTTTGTATTTCTAGAAGTTACATGT
TATCAATTTCAATTTTCAGAAAAAATCTTCAAAAAATTGTTTTTAAACATGAACCATCACAAAAAT--------------
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-----------------------------------------------------TAGTTGACAAGACATGATAGAGTAAAT
TATAGGGAAAGAAAGGG-AAAAAAATCCATACACTCATTATTCATGCCGTAATGTAGAGCTCGACCGATAACATGAGAAC
ATACTCCCTCCATTCCATATTCTAATGCGTATAGTTTTTTGGTCTAGATTCCGAAATGTAGTGCGCCTAAGCTGCTTTGT
ACCACAATAGCCCTCGCCTGGTTCACGGAGTGCAGCAGCAGACAGCATGTGCTGTGGCAGAGTGAGCAGACGGAGGGGTA
ATTTTCGTCCAAATAAGAGTGCCAGGTCACGTCTTGGTATAACCGCTACGCACAACGGCGCACTACAAAAAGGAATGGAG
GGAGTAACTAAATTGAACTCTTGATTCGCAAAAAATAATTCTTAATTGAAATGTTATTTAAACAAATAATGGGAGTATTT
TTTTGCAAGAAAAATGACTTGGTGATGGCAAAGTAGAAGCGTTCCC----------------------------------
TTCCCTGGCATCCGGCATACATTGTGCAAGTTAAAACTCTGGCGGTGGGCTAAACAGAAAAGGCGCCGCTGGCCTAATTT
AGTGCCGCCACGCCGAAGACGAGTGGGGGGGCGGCGGC----------GAGGACAGTCAAAGCGCTCGCTGACTGCGCCG
CGTTTTATTCCCTCTCGCCGCTCCCTCCACCGCTCGCTCCCCTTTTCCCCTACTCACTTCCCTTTTTTAACCCCCCGCCC
ATCTATAAATGCCCGCCCCCCTCCTCGCCTTATCCTGGGCGCTACACACCCACCCCACCCCACCCCCCTGCATCACCAAA
ACGCCCGCATAACCAAAAAGATACGCGCACGCCACTTGTACACCTGCTGCACCCATGGCGCCTAGAGCGGCGGAGAAGGC
GCCTGTCTCCCCGCCCACCGGCCTCGGCCTCGGCGTCGGCGGCGGGATCGGGGTCGTCGCCGGCGGCGCGCACTACAGGG
GCGTCCGGAAGCGCCCGTGGGGACGCTACGCCGCGGAGATCCGCGACCCGGCCAAGAAGAGCAGGGTGTGGCTCGGCACG
TACGACACCGCGGAGGAGGCCGCGCGCGCCTACGACACCGCCGCCCGCGAGTTCCGCGGCGCCAAGGCGAAGACCAACTT
CCCGTTCCCT---TCGTCGTCGTTGTCCCCTGTCGCCGCCGCCGGCGGCGGCGGCGGCAGCCCGAGCAGCGACAGCACCT
TGGACTCGAGCGGCGGAGGGAGCGGCGGCTGCGCCCAGGCGCCCATGCAGGCCATCCCGCTGCCGCCCGCCCTCGACCTG
GACCTCTTCCACCGCGCGGCGGTCGTCACGGCCGTCGCCGGCGGCGGCATGCGCTTCCCATTCAACGGTTACCCGGTGGC
GCCGCGCCAGCCCCTGCACCCGTACTTCTTCTACGAACAGGCCGCGGCCGCCGCGGCGGCGTCGGCGTCGGGGTACCGCG
CGCTGAAGGTGGCGCAGCCGGTCACCGTGGCGGCCGTTGCGCAGAGCGACTCCGACTCCTCGTCGGTCGTTGATCTGTCC
CCGTCGCCCCCCGCGGTGACAGCGCATAAGGCGGTCGCGTTTGATCTGGATCTCAACCGGCCGCCGCCTTCCGAGGACTA
GACAAAGGACAAATTTTAGATGATGACTGTAGTTTCTCATTTTTCCTGCAGGGAACGCT-----TTTTTTCCTTCTTCTG
TTCTGGTCCTCTTGTATTTTTGTTTAGTTGTCCGAGACAGACCGAGGAGCCCTGTAAATAGTTTTTCCGCCGAGAACAGA
GCAGAACCGATCTGAGATCTGTTGGTCTAAAACGGATCAAACCGGCGCTGAGGTGAACCGAGACTTGAGTAT---ATGTG
TACTCCTCATAAG--ATGATGAATTTTTCAGAAGATTATG-----------TCCATCTTTTGTGTTGAGAAAGGCAAGAT
TTA-----------------------------------------------------------------------------
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-----------------------------------TGGTTGGGAAACATTTATTCGCTAATCGGCGCCGCTCCGTCTCCG
GCCATCAGGTTTGCTGCCATCTCCGCGACACGGCAGTGAATGGTTTGGTGATCTGCACGTCTCGCTCTGCATGGACACTT
CTGGGCTCGACTGACCGGAGG-----CTGATCAGGAGTAATTGAGCTGGA-GTAACGTAATTTTGCATGTAGTTATTGCT
CGCTCAGCTGTCAAATTTGCGGCTTTCAAACCCTTC----GCTGACAGCTCGGGAGAAAAGGAAAGATGGGTTAGATCTA
CGGGGACGGAAAGGGCCAAGCTGCAGTGGGCACGAGAGACAAGTGTGGACGAGAGAGAGAGAGGGACGGCCTGGGAGCGG
TG-----CGGTGGACGGACCGACGATCCGTAGGCGCGATGGAACCGCGAC
>chr3D_946
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-------------------------------------------------------------------------------A
ACGCCCGCATAACCAAAAAGATACGCGCACGCCACTTATACACCTGCTGCACCCATGGCGCCTAGAGCGGCGGAGAAGGC
GCCTGTCTCCCCGCCCACCGGGCTCGGCCTCGGCCTCGGCGGCGGGGTCGGGGTCGTCGCCGGGGGCGCGCACTACAGGG
GCGTCCGCAAGCGCCCGTGGGGACGTTACGCCGCGGAGATCCGTGACCCGGCCAAGAAGAGCAGGGTGTGGCTCGGCACG
TACGACACGGCGGAGGAGGCCGCGCGCGCCTACGACACCGCCGCGCGTGAGTTCCGCGGCGCCAAGGCGAAAACCAACTT
CCCGTTCCCTTCGTCGTCGTCGTCGTCCCCTGTCGCCGGCGCCGGCGGCG---GCGGCAGCCCGAGCAGCGACAGCACCT
TGGACTCGAGCGGCGGAGGGAGCGGCGGCTGCGCCCAGGCGCCCATGCAGGCCATCCCGCTGCCGCCCGCCCTCGACCTG
GACCTCTTCCACCGCGCGGCGGCCGTCACGGCGGTCGCCGGCGGCGGCATGCGCTTCCCATTCAACGGTTACCCGGTGGC
GCCGCGCCAGCCCATGCACCCGTACTTCTTCTACGAACAGGCCGCAGCG---GCGGCGGCGGCGGCGTCGGGGTACCGCG
CGCTGAAGGTGGCGCAGCCGGTCACCGTGGCGGCCGTTGCTCGGAGCGACTCCGACTCCTCGTCGGTCGTTGATCTGTCC
CCGTCGCCCCCCGCGGTGACAGCGCATAAGGCGGTCGCGTTTGATCTGGATCTGAACCGGCCGCCGCCTTCCGAGGACTA
GACAAAGGACAAATTTTAGATGATGACTGTAGTTTCTCATTTTTCCTGCAGGGAACGTTTTTTCTTTTTTCCTTCTTCTG
TTCTGGTCCTCTTGTATTTTTGTTTAGTTGTCCGAGACAGACCGAGGAGCCTTGTAAATAGTGTTTCCGCCGAGAACAGA
GCAGAACCGATCTGAGATCTGTTGGTCTAAA-CGGATCAAACCGGCGTTGAGGTGAACCGAGACTTGAGTAT---ATGTG
TAAGATGAGTGTAGCATGATGAATTTTTCAGAACAGAAGTCTCC-ATCTATTCCATCTTTTGCGTTCAGAAAGGCAAGAT
TTA-----------------------------------------------------------------------------
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-----------------------------------TGGTTGGGAAACATTTATTCGCTAATCGGCGCCGCTCCGTCTCCA
GTCATCAGTTTTGCTGCCATCTCTGCGACACGACAGTTAATGGTTTGGTGAATTGAACGTCTCACTCTGCATGGACACTT
CTGGACTCGACTGACCTGATG-----CTGATCAGGAGTAATTGAGCTGGAAGTAACGTAAATTTGCATGTAATTATTGCT
CGCTCAGCTGTCAAATTTGCGGCTTTCAAACCCTTCACACGCTGACAGCTCGGGAGAAAAGGAAAGATGGGTTAGATCTA
CGGGGACGGAAAGGGCCAAGCTGCAGTGGGCACGAGAGACAAGCGTGGAC------GAGAGAGGGATGGCGTGGGAGCGG
TG-----CGGTGGACGGACCGACGATCCGTAGGCGCGATGGAACCGCGAC
>SNPs
-----S-----------------------------S------S-S-------SSSS---S---S----------------
--------SS-SSSS--SSSSSS-S---------S------------------S---SSSSSSSSSSSSSS---------
------S-S------S-------------S----S---S-----------SS---------S-S----------------
---S-----S-------SS------------------SSS----S--SSSS--S--------S-S-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-------
----------S----SSS----S---------------SS----------------------------------------
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---------------------------------------------------------S-------------SSSSSSS--
--------------------S-S--S-SS-S-S-S---SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------------S---S-----------S--S------------------------------S------S---------
--------------------------------------SSSSSSSSSS-------------S------------------
-----------------------------------------------------------------------------S--
---------------S----------------------------------------------------------------
-------S------------------------------------------------------------------------
-------------------S----------S-----S--------------S-----------S----------------
----------------S--------------------------------------------------S------------
-----S--------------------------------------------------------------------S-----
----------------------------------------------------------------------S---------
-------S-----S------------------------------------------------------------------
--------------------------S--------------------------------S--------------------
SS----------S--------------------------------------------------------------S----
----------------------------------------S---------------------------------------
------------------------------------S--------------------S-------------S--------
----------------------------------------------------S---S-----------------------
--------------------------------S-----------------------------------------------
------------------------------------------------------------------------SSS-----
--------------------------------------------S-----------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------S
--S--------------------------------S---------------------------------------SS---
---------------------SSSSS--------------------------------S---------------------
--------------------------------------------------S-----------------------------
-----------------------------------------------------S---------S----------------
--SSSSS-------------------------------------------
>forward_960
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------------------------------------------------------------GGCAACGCAAAGTACATCCG
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>reverse_2477
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----------------------------------------------------------------------------TGCT
TGGATCCAAACCCTCC----------------------------------------------------------------
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