>input_sequence_70362
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--------------------------------------------------------ATGCAGCAGGGCGAGTACCGCTCG
TCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCTGCTGCGGCT---GCGGCGGCCGCGGCCATGGCGCCCCTGGCGGCTGC
GGCCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCCATGCCCATGGCGATGGCGATGC
CGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGC
GAGCCGCACAAGCGCACGCGCATCTGGCTGGGCTCCTACGCCACCCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGT
CTTCTACCTGCGCGGCCGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTGGCGCTGTCGTCGCCCGAGGCCG
CCGAGGCCGGCG------GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAG
AAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTGCAGACCGGCATGACCACCATGGTCGCCGCGCCCGCGCACCACCG
CGAGCGGCAGCGGCTCCACCACCACCACCACCAC---GCGGAGCCGCACGGCGAGGAGCTGCACCGCCACGTGAAGCAGC
AGCGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------------------------------
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-----GGCGCCGAGCCCGGACACCTCCGACGCCGA------GGCCGAGTGA-----------------------------
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>chr2A_1_TraesCS2A01G514300
ACCTTTTCCCCTTTCGCGGGGGTAAGGACGATCTTT-TCGTTGCCTAGTCAGCTCTGTTTTGTAAGGCATGCAAGTATAT
TTCTTCTAGAATTTGCCCTTATTGTATACACAAGCGGTTACTTGTTGACCCGAAAA--TGTGAACGGAACTTGGACAAGA
AGAAACCGGAGCGGCAACGGAGGTCAGCAAAATTACAGCGTGGCGACAAGTGCGCACA-CACGAGGGTTGGTGAGCAACA
GAGAAGGATGGATCGGATGTGACGTTGCGTTCATCTCATCATAAAACTTACCACAAGAAAGAACCTCTCGTGTTTTTTTC
---TTGGACCGGCGACAGAACAACGATGTTGCTCCTTGCTACTCCCTCGTTTTTTTGACACTAGTATCAAAAAAACGTCT
TACATTATGCGGCGAGAGTAAATGACGAGTTGTGCAGCGGATGCAAATTCCAGTTCCGAGGCGACCAAGTAGCCACGCTA
GCC-------------GCCATGAGATGACGCTAGCTGTACCGGAAGTACAAAATTACAAATACAAATACGTAGTACGACG
GATGGATGTTGGTTCGGAGAATTGTACGTATGTACCGGACGCAAGTG---------------------------------
-------------------------AGGTGAGACGGTGGGCCTGGCGATTTGGGGTGCCGCTGGCCTGGGTCGGATCGGG
TC-----AGGCTCCCTTCCAAACAGCACAGTAGAGTACACTGCTGCTCCT---GCCGCGGCCGTCGATGTCCTCTTCTCT
CTTCCCCCTCCGGACCGGGGCTAGTTTATGATTATCCCAACCAAACTCTAATCATACCCCCACCCACAAAATCCCAATAC
AAATACCACCGCCCAGCAAATAGATAGATAGCCCGGGCTGGACTGGAGGGAGGCAACAAAGAGAGACCAGCTCCGCCCCG
CTGCACACCAAAAGCTACCCCTCCTTCGGGCACGCGGGCGGCCGGCCGGGGAGAGAGAGGGCAGCCGAG----------G
CGGCTAGCCAGCGTAGGAGCTTAGGTAGGTTGTAGGCAGGCAGCCTCGCTTCGCTCATGCAGCAGGGCGAGTACCGCTCG
TCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCTGCTGCGGCT---GCGGCGGCCGCGGCCATGGCGCCCCTGGCGGCTGC
GGCCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCCATGCCCATGGCGATGGCGATGC
CGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGC
GAGCCGCACAAGCGCACGCGCATCTGGCTGGGCTCCTACGCCACCCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGT
CTTCTACCTGCGCGGCCGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTGGCGCTGTCGTCGCCCGAGGCCG
CCGAGGCCGGCG------GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAG
AAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTGCAGACCGGCATGACCACCATGGTCGCCGCGCCCGCGCACCACCG
CGAGCGGCAGCGGCTCCACCACCACCACCACCAC---GCGGAGCCGCACGGCGAGGAGCTGCACCGCCACGTGAAGCAGC
AGCGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------------------------------
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-----GGCGCCGAGCCCGGACACCTCCGACGCCGAGGCCGAGTGAAGCAGCTAGGCATCAAAGAGAAGCAGCGGCTTCCA
GTCCAGCCATCCACAACCCGCCGCCCATGCAGCTAGCTAGTCTCCGGAGAGCCGCCAGCCGGCGTGTGATCA---ATCAG
GTTCAGCACAAGCAGCTCAATCCAGTCCACCCACCCACCTACTGTTCCGCCTGTCTCCCTAGCAAGCTCCGCCGGGTGCG
CGTCGGAGAGG----GCGGCGAGGTGCCGGTGGTCGGTGGGTCGGTGGCCGGATTTTTCAATACGTCGTTCTGGATAAGA
ACAAGGGAGGGGGAGGGGAGGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCAAAAAAGACAGCTGTAACAGT-G
ATAAAACAATCGCCACCATCTTCTTTTCTCTCTCTCTCTCTCGCCGTCTCTTGCTGGCTGTTATCGAGTAGATAAGCATC
AATTAGCAGTACAATTTTCTGTTAATTAATCGTCCCAGTTGGCCGACGCCATCGCCGCCTCCGTTGTTACTTGTTAATTG
CTGGGTGCATCGCTTCTGGATTTTGATCTGGTATAC-----AATTGATCCGGTGGTTCGTACGTATCCAGTCGCT-----
GGGCTTAATCCGGGTGTCTGCTGGTGGGAGCAGCAGCAAAGCGAGCATATCCGCGTTAGGTTAGGCATCGGCAGCCAGCC
AGCCAGCCAGCCAGCATGCACTAATCAGTCGGGGGTGAGACTTTTCTCCGTCCATGTCTCCG---CTGCATGCGTGCGTC
TGAATCCGAACGCGCCGGTGCAATTATGGATCAG-----------GGATTGGTACCG------------------GTGGC
TAATCTAATCGCCAACGCCAACGAACCAAGTGGAGCGAGCTGCATGAGTAGTAGCA------CAATTGGGCAGAGGGGTC
GTAGGTGGATTACTAGTGCATGCTGCATGATGGCGTGTGTGTGTGTGGGTGATTGGTTTTGGTTGGGTTGGGTTGGGTGG
GTATTAGGCCAAGGCC-AGGCCACCACATCGGCTGGAAAGCAAAGCGACGCCCAGAGCTCCG
>chr2D_1
ACCTTTTTCCTTTCTGCGGGGGTAAGGATAATCTTTGTCATTGCCTAGTCAGGTCTGTTTTGTAATAAGACATGC-ATAT
TTCTTCTAGAATTTGCCCTTATTGTATACTCAAGCGGTTACTTGTTGACCCCAAAAAATGTGAACGGAACTTGGACAGGA
AGAAACCAGAGCGGCAACGGAGGTCAACAAAATTACAGCGTGGCGACAAGTGCGCACGGCACGAGGGTTGGTGAGCAACA
GAGAAGGATGGAT----TGTGATGCTGCGATCATCCTATCATATAACTTACCACGAGAAAGAACCGTTCATGTTTTTCTT
GGATTGGACCAGCGACA--ACAACGATGGTGTTTCCACAGCCAGAGCAAGCAA---------------------------
-----------------------------TTGTCCACCAAATACAAATTCCAATCCTGAGGTAACTAATCGGCCATGTCA
GCTTCAGAATTAAGTAGCCATGAGTTGACGCTAGCTGTGCCGAATGTAG-----TACAGGTACAAATACAGCCGA--ACC
GATTGATGTTGCCTGCGAGAATTGTACGTATACGGATGGACTACTGGTCCAATACGTGTATGTATGTAGGGATATGCATG
GACCTCTGGGGTGTCGTCCGGACGCAGGTTAGGCGGTGGACCTAGCGATTAGGGGTGGCGCTGG-----GTCGGATCGGG
TCGGGCCAGGCTCCCTTCCAAACAGCACAGTAGAGTACACTGCTGCT------GCCGCCGCCGTCGATGTCCTCTTCTCT
CTTCCCCCCTCCCGCCCG-----GTTTATGATTATCCCAACCAAACTCTAACCATACCCCCACCCACAAAATCCCAATAC
AAATACCACCGCCCAGCAAATAGATAGATAGCCCGG-----ACCGGAGGGAGGGAAGAGAGAGAGTCCAGCTCCGCT--G
CCGCACACCAAAAGCTACTCCTCCTTTGGGCACGCGG----CCGGCAGGGAGGGGAGAGGGGAGCCGAGGCGGCGGCCGG
CGGCTAGCCAGCATAGGAGCATAGGTAGTTGGTAGGCAGCTCA----GCTTCGCTCATGCAGCAGGGCGAGTACCGCTCG
TCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCGT---------CGGCTGCGGCGGCGGCGATGGCGCCTCTGGCGGCTGC
GGTCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCCATGCCCATGGCGATGGCGATGC
CGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGC
GAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCCTACGCCACCCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGT
CTTCTACCTGCGCGGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTGGCGCTGTCGTCGCCCGAGGCCG
CCGCCGAGGCCG------GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAG
AAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGGTCGCCGCGCCCGCGCACCACCG
GGAGCGGCAGCGGCTCCACCAACACCACCACCAC---GCGGAGCCGCACGCTGAGGAGCTGCACCGCCACGTGAAGCAGC
AGCGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------------------------------
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-----GGCGCCGAGCCCGGACACCTCCGACGCCGA------GTGAAGCAGCCAAGCAGCGAGAAGAAGCAGCGGCTGCT-
-TCCAGTCATCCACAACCCGTCGACCATGC----AGCTAGTCTCCGGAGAGCGGCCAGCCGGCGTATGATCA---ATCAG
ATTCAGCACAACCAACTCAATCGTG--------------------TCCACCTGTCCCCCTAGCGAGCTCCGCCGCGTCGG
T------GAGG----GCGGCGAGGTGCCGGTGGTCGGTGGGTCGGTGGCCGGATTTTTCAATACGTCGTTCTGGATAAGA
ACAAGGGAGGG--AGGGGAAGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCAAAAAAGACAGCTGTAACAGTTG
ATAAAACAATCGCCACCATCTTCTTTTTCTTCTCTCTCTCT----------------CTGTTATCGAGTAGATAAGCAGC
GATTAGCAGTACAATGTTCTGTTAATTAATCGTCCCAGTTGGCCGACTCGATCGCCCCCTCCGTTG----TTGTTAATTG
CTGAGTGCATCGCCTCTGGATTTTGATCCCGTATACAAT----TTGATCCAGTGGTTCGTACGTATCCAGTCGCTCGGCT
CGGCTTAATCCGGGTGTCTGCTGGTGGGAGCAGCAACAAAGCAAGCATATCCGCGTTAGGTTAGGCATCGGCAGCCGGCC
A--------GCCAGCATGCACTAATCAGTT-GGGGTGAGACTTTTCTCCGTCCATGTCTCTGCCTCTGCATGCTTGTGTC
TGAATCCGAACGTGCCGGCGCAATTATGGATCAG-----------GGAGCGGCGGGCCGATTGGTACTGCTACTCGTGGC
TAATCTAATCGCCAACGCCAAGGAACGGAGTGGATCTAGCTACATGAGCACAGAGGTGGCAGCAACTGGGCAGATGGGTC
GTAGGTAGATTACTGGTATGATG-----------------GTGTGTGGGTGATTGGTTTTGGTTGGGTTGGGT-----GG
GTATTAGGCCAAGGCCCAGGCCACCACATCGGACGGAAAGCAAAGCAACGCCCACAGCTCCG
>chr2B_597
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----------------------------------GGTGGGCCTAGCGATTTGGGGTGCCGCTGGCCTGGCTCGGATCGGG
TC-----AGGCTCCCTTCCAAACAGCACAGTAGAGTACACTGCTGCTGCTGCCGCTGCTGCCGTCGATGTCCTCTTCTCT
TCTCCCTCCC--GAGCGGAGCTAGTTTATGATTATCCCAACCAAACTCTAATCATACCCCCACCCACAAAATCCCAATAC
AAATACCACCGCCCAGCAAATAGATAGATAGCCCGG-----ACTGGAGGGAGGGAAGAGAGAGAAACCAGCTC-------
CTGCAAACCAAAAGCTACTCCTCCTTTGCGCACGCGG----CAGG---------GAGAGAGCAGCCGAGGCGGCGGCCGG
CGGCTAGCCAGCATAGGAGCTTAGGTAGGTGGTAGGCAGCTCA----GCTTCGCTCATGCAGCAGGGCGAGTACCGCTCG
TCGTCTTCCAGCAAGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGGCCATGGCGCCTTTGGCGGCCGC
GGCCGCGGCGGTGGCGGCCAAGGAGGAGCACAACGTGACCGTGGCCGTGGCGCCGCCCATCCCCATGGCGATGGCGATGC
CGCTGCAGCAGCAGCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGC
GAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCGTACGCCACGCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGT
CTTCTACCTGCGCGGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTCGCGCTGTCGTCGCCCGAGGCCG
CCGAGGCCGGCGCTGCCGGAGGGGAGATGGCGGGCGAGCTGGGCGACGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAG
AAGGCCATCGAAGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACGATGGTCGCCGCGCCCACGCACCAACG
GGAGCGGCAGAGGCT---CCACCACCACCACCAC---GCGGAGCCGCACGGCGAGGAGCTGCACCGCCACGTGAAGCAGC
AGCGGACGGCGTGGAACGGGCGCGCCAAGAACCCGGATCTCAACCA----------------------------------
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-----GGCGCCGAGCCCGGACACCTCCGACGCCGA------GTGAAGCAGCTAAGCAGCAAGAAGAAGCAGCGGCTTCCG
-----GTCATCCACAACCAGTCGACCATGC----AGCCAGTCTCCGGAGAGCAGCCAGC----GTATGATCAACCATCAG
ATTCAGCACAACCAACTCAATCCAGTCCGCCGACCCACCTACCGTTCCGCCTGTCTCCCTAGCAAGCTCCGCCGCGTCGG
T------GAGGGCGCGCGGCGAGGTACCGGTGGTCGGTGGGTCGGTGGCGAGATTTTTCAATACGTTGTTCTGGATAAGA
ACAAGGGAGGG-GAGGGGAGGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCAAAAAAGACAGCTGTAACAGT-G
ATAAAACAATCGCCACCATCTTCTTTCTTTTCTCCCTCTCTCC----------CTGGCTGTTATCGAGTAGATAAGCAGC
GATTAGCAGTACAAC-TTGTCTTAATTAATCG-CCCAGTTGGCCGACTCGATCGCCCCCTCCGTTG----TT---AATTG
CTGAGTGCATCGCTTCTGGATTTTGATCTCGTATACAATTGAATTGATCCAGTGGTTCGTACGTACGTATCCCGTC-GCT
GGGCTTAATCCGGCTGTCTGCTGGTGGGAGCAGCAAAGCA--AAGCATATCCGCGTTAGGTTAGGCATCGGCAGCCGGCC
ACCAT--------GCACTCATTAATCAGTT-GAGATGAGACTTTTCTCCGTCCATGTCTCTG---CTGCATGCGTGTGTC
TGGATCTGAATGTGCCGGTGCGATTATGGACGAGGGCGTCGTGGCGGATTGGTGCTG------------------GTGGC
TAATCTAATCGCCAACG------AACCAAGTGGAGCTAGCTACATGAG--------------------------------
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>chr2D_992
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-----------------------------------------------GCTTCGCTCAT---GCAGGGCGAGTACCGCTCG
TCGTCTTCCAGCGAGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGGCCATGGCGCCTCTGGCGGCTGC
GGCCGCGGCGGCGGCGGCCAAGGAGGAGCACAACGTGAAGGCGGCCGTGGCGCCGCCCATCCCCATGGCGATGGCGATGC
CGCTGG---------AGCCGAGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGT
GAGCCGCACAAGCGGACGCGCATCTGGCTGGGGTCCTACGCGACGCCCGTGGCGGCGGCGCGCGCCTACGACACGGCCGT
GTTCTACCTGCGCGGGAGGTCAGCGCGGCTCAATTTCCCCGACGAGATCTCCGCGCTGGCACAGTCTTCGCCCGAGGCCG
AAGC---------------------------------------------CGGCGCGTTGTCCGCCGCGTCAATCCGGAAG
AAGGCCATCGAGGTCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGGTCGCCGCGCCCACGCACCACCA
CGAGCGGAAGAAGCACCAGTCCGGCTCCTCCGGGGCAGGGGAGCTCGAGGGCGAGCTGGGTGACGGCCCCGTGCTGCCCG
CCGCGTCAATCCGGAAGAAGGCCATCGAGGTAGTGTCCCGCGTGGATGCGCTCCAGAGCGGCATGATGATGGGCGCCTTG
CCCACGCACCACGGCGAGCGGAAGAAGCACCATGCCGGCGCCTCCGGGTCAGGTGAGCTCGAGGGCGAGCTGGCTGACGG
CCCCGTGGTGCCCGCCGCGTTAATCCGGAAGAAGGCCATCGAGGTCGGGTCCCGCATGGACGCGCTCCAGAGGGGCATGA
CGATGGGCGCCGCGCCCACGCACCACCGCAAGCAGCAG------------------------------------------
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>SNPs
-------S--S--SS-------------SS---------S------------S------------SSSSSSSSSSS----
-----------------------------S---------------------S-------------------------S--
-------S------------------S------------------------------S----------------------
-------------SSSS-----S-S----S-----SS------S----------S----------SS--S-------S-S
----------S------SS---------S--S-S-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S-SS--S---------S-S-S----SS--S--SSS----S-SS-
--S---------------------S-------------S---S-S---SSSSSS----SS---------SSSSS-SS--S
---S-------SS-SS---------------SSSSSS-SSSS-SSS----------------------------------
-----------------------------S--S----------S------------------------------------
-----------------------------------------------S----------S---------------------
--------S--S------S-------------------------------------------------------------
------------------------------------SSSSS------------S--S-S-----------------SSS-
------------------S-------S----------SSSS-----S---SS-S--------------------------
------------S-----------------S--------SSSSSSSS---------------------------------
--------------------------------S-----S--------S-----S--------------S-----------
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--------------S-----------------S-----------------------------------------------
----------------S---------------------------------------------------------------
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-----------------------------------S--------------------------------------------
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-----------------------------------SSSSSS------------S---S---SS----------------S
S-----S-------------S--S------SSSS------------------S------------S--------------
S----------S--S-------------S--S----------S-------------------------------S--SS-
SSSSSSS-------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------S-S------------SSSSSSSSSSS-------------------------S-
S--------------S-------------------------------S-S------S---------SSSS----------
---S-------------------------S--------------------S-----------------------------
-----------------------------------S------S---------------------------------S---
-S-SSSSSS--------------------SS-----------------------------S---------------S---
------------S----------------------------------------S-S------------------------
---------------------S--------------S----S------S-SSSSSS---------S--------S-----
------S-------S--SSSSSSSSSSSSSSSSSSSSSSS---------------------------------SSSSS--
--------------------------------SS------------S-------S-------
>forward_812
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------------------------------------------------------------------------TCTTCTCT
CTTCCCCCTCCG--------------------------------------------------------------------
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>reverse_2932
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---------------------------------------------------TAGCACAATTGGGCAGAGGG---------
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