>input_sequence_70358
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----------------------------------------------ATGAAGGGGGGAGAGGCGCCGGCGCCGGCGGCGA
CGGTGGTGGTGGGGGAGGAGCACTGCGAGGCGGAGGACAGGGAGCTGACGGTGCGCAAGACCACGCTCTTCTCCCCGGGG
GACGGGCTGGAGGCCTACGACCACCGCACGGGCGCGCTGGCCTTCCGCCTCGAGACGTACGGCCGGGGAGGCGCCTGCGG
CGGGGGCGCGGCGGCGGGGGACCTGGCGCTGCTGGGCGCCGCGGGGGACCCCGTGCTCACCGTCCGCAGGCGCCGCCCCA
GCCTGCACCACCGCTGGGACGGCTTCCTGGGCGACGGGGGGGCCGCGGGCGGCGCCAAGCCGCTCTTCTCCGCGCGCCGC
TCCTCCATCCTCGGCGCCGGGGCCGGGGTCCTCGTCGACCTCCTCGCCCCCGCCCACTCCCCCGCCGCCAAGGAGTTCCG
CGTCGACGGGTCCTTCCCCAGGCGGTGCTGCCGCGTGGTGGCGGTGGCCTCCTCGGGCGGCGCGGGCGAGGTGGAGGAGG
GGGAGGACCAGGAGACGGTGGTGGCGGAGGTGCGCAGGAAGGTGGACGAGGGCGCGCACGTGGTGCTCGGCCGCGACGTG
TTCGTGCTGTGGGTGCGCGCCGGCTTCGACGCCGCCTTCGCCATGGGGATCGTGCTCGTGCTCGGCCGCATCACCGGGGA
CGAGCTCGACGGCGCCCTCGGCGAGGAGCTGCTCCTCGAGGCCACCTCGCCGGTGTAG----------------------
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>chr1A_1_TraesCS1A01G328100
CCGCCCCCGGGCGCACGGCGAGACCCAATCCCTGTCCATCGCCGTCCATCAACATGGCATCCGCAGGATTTGGGTATGGA
TATTACGTGCCCATATCTGCACCCATCTCAAAAAAATTCACCCATACCCGTACCTGTACCCACGCACCGGGTTTCAAACT
GTTCCCGTATGCGTACCCGTGGGTAAAAACTACCCAGCTAGGTGTGTATGTTTGAGCATTTACATTTTCGTATTTTGACA
CATATTGACAGCATCTCAACACATACATACAATATTCCATCACATATACCCATCTAGGAGATCAGGAGAAGGAGCAGGCC
GGAGGCGGCTGGTTGCTTTCATGCACGCAGCGGCGGTGGCTTGGCGGCAGCACGGCGCCGACCGCCTAGCGTTAGCAAGT
GGGCGCGATTTGATGGTGTGTGTGAGGTTCAACCGCCTAGGGTTAGCAAGTGGGTGCGATTTGATAGTGTGTATGAGGTG
CAAGGGGGTGGGGCGCAATTTTGGATCCGGAATTTGGAGGGGGCGGGGCGTGGTTGGGTCCAGTGGCAGCTTAGGCTTTT
TTTATCTAAGTCAATGACACATGAGACCTATTTGATATGGTTATTATTATACGGGTTTGAGGGTTTGCATGTATGGGTAT
TGCCTTCCCATACCCGTACCCGCCTAACCCATTAGGTATGATTTTTCTCATTTAAAAACCCATAGGTGTTTTAATTTCTC
ATATCCTTATTCTATTAGGGTTTTTATATCTGTCGGGTTCGCAGGTAGCGGGTACTCGTTGCCATGTTGAGCCGTCCATC
GCCACCACCTCCCTGTGTACCCGCTCGTGGGGTGGGCCCGGTGCTGACCCGGCCCCACGAACCCGGAACCCACCGAGAGA
AAGAAAGAAAAGCTAGCCGACCCGCCCCACCGCCCACGCTATTTACCACCTCGTTCTACGCGCGGCGAC----ACAGACG
AGAGCAGAGAGAGCCAGACTAGTCCGAG--CGCGCGCGAGAGAGGTATGAAGGGGGGAGAGGCGCCGGCGCCGGCGGCGA
CGGTGGTGGTGGGGGAGGAGCACTGCGAGGCGGAGGACAGGGAGCTGACGGTGCGCAAGACCACGCTCTTCTCCCCGGGG
GACGGGCTGGAGGCCTACGACCACCGCACGGGCGCGCTGGCCTTCCGCCTCGAGACGTACGGCCGGGGAGGCGCCTGCGG
CGGGGGCGCGGCGGCGGGGGACCTGGCGCTGCTGGGCGCCGCGGGGGACCCCGTGCTCACCGTCCGCAGGCGCCGCCCCA
GCCTGCACCACCGCTGGGACGGCTTCCTGGGCGACGGGGGGGCCGCGGGCGGCGCCAAGCCGCTCTTCTCCGCGCGCCGC
TCCTCCATCCTCGGCGCCGGGGCCGGGGTCCTCGTCGACCTCCTCGCCCCCGCCCACTCCCCCGCCGCCAAGGAGTTCCG
CGTCGACGGGTCCTTCCCCAGGCGGTGCTGCCGCGTGGTGGCGGTGGCCTCCTCGGGCGGCGCGGGCGAGGTGGAGGAGG
GGGAGGACCAGGAGACGGTGGTGGCGGAGGTGCGCAGGAAGGTGGACGAGGGCGCGCACGTGGTGCTCGGCCGCGACGTG
TTCGTGCTGTGGGTGCGCGCCGGCTTCGACGCCGCCTTCGCCATGGGGATCGTGCTCGTGCTCGGCCGCATCACCGGGGA
CGAGCTCGACGGCGCCCTCGGCGAGGAGCTGCTCCTCGAGGCCACCTCGCCGGTGTAGTGGTAGCCACTAGGCTCCCCGT
GGTTGCCTGGTCCTCTGTCCC-CCTCCATTGGTCTGCGC-----AGGCAGGCAGGGTGG-----------GTGATGCGCA
TCTCGCGGACGGACTCCTGGCTGGCATTGTTGCCTGGCAAGCAAAGCT-------TGGATTGGATCGAGCTTGTAGCTTT
GAGTGAACATGGACAAGATCTCCACTGCACTGCACTGTTTGAATATTACATTAGTTTTGATATAATTATAAAA---GTAC
TATCTGGAATTGTTAAACAGGGTGTTATGAAAGTCTTCTATACCTACTGAAGATTCGGATC-------------------
CAT-------------------CGCTCATGACTACTGCAA-TTAAGCGATA---------------------------TA
TCTGGTGCAAAGCGTAACCGCGCGCGCTGAATTTACTCTAA---------------------------------------
--------------------------TGTGGTAAAATTTTCAAAAAATTGACTGCAATTCATCCTAAAACGATGCTATAA
ACCAGAG-------CCGACTGCATTGTCTTCTA---TCTCGATTGCCTCGTA---TAATATTGGTGATCCACCTGAGCT-
----ACCTCACCACGAGGTGTGCGTATTTGGAAATTCAGAGTCAGCAAGTTGGAAACTGGGAACAACGTGGTGTGGCAGT
GAAGAGAAGGCGGTGCTTT-CAGACTGAGAAATTAAGCGATGTTC-AGAGATCCCCTCTACCTACAAAAGATTCGGGTTT
GGTCATGCGACTGGTTCCAATAGCTCATGAGTCATGACTTGTGTA-----------------------------------
-----------------------------------------AATTAAGAGGTACTC--TACTAGTACAAGCTAAATTACC
ACTAGTGATAGCAAATTTACTTCTGTGTAGTACTACTAAATTGCAAGGTCAAGTTTTCAGAAAAGAAGATTATCATGA--
----------------------------------------------------------AACATTGGCATAAACCGAAGCC
GAGTGCACCATTTTCAGTCTCGATTGCCTCGTATAATTTTTTTGGACTACCTT---------GCTACGATGCGTATACAT
TTTCAAAATTCAGGGTCAGCAAATTGCAAACTGGAGACCAGTTTATGTGGCGGTGAAGCGAAGCTGGTGCTTTCAGGCCG
AGAAATTAAACGTGCAACCTCTC
>chr1D_1
CCGCCCCCGGGCGCACGGCGAGACCCAATCCCTATCCATCGCCGTCCCTCCTTCTCCTTCTCCTTGTGGCG---------
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-------------------CCCGCTCGTGGGGTG-----GGTGCTGACCCGGCCCCACGAACCCGGAACCCACCGAGAGA
AAGAAAGAAAAGCTAGCCG---------ACCGCCCACGCTATTTACCACCTCGTTCCGCGCGCGCTGAAACTGACAGACG
AGAGCAGAGAGCTAGTAGCTTTGAGCCAGCCGAGCGAGGGAGAGAGATGAAGGGGGGAGAGGCGCCG------GCGGCGA
CGGTGGTGGTGGGGGAGGAGCACTGCGAGACGGAGGACAGGGAGCTGACGGTGCGCAAGACCACGCTCTTCTCGCCGGGG
GACGGGCTGGAGGCCTACGACCACCGCACGGGCGCGCTGGCCTTCCGCCTCGAGACCTACGGCCGGGGAGGCGCCTGCGG
CGGGGGCGCGGCGGCCGGGGACCTGGCGCTGCTGGGCGCCGCGGGGGACCCCGTGCTCACCGTCCGCAGGCGCCGCCCCA
GCCTGCACCACCGCTGGGACGGCTTCCTGGGCGACGGGG---------GCGGCGCCAAGCCGCTCTTCTCCGCCCGCCGC
TCCTCCATCCTCGGCGCCGGGGCCGGGGTCCTCGTCGACCTCCTCGCCCCCGCCCATA---CCGCCGCCAAGGAGTTCCG
CGTCGACGGGTCCTTCCCGAGGCGCTGCTGCCGCGTGGTGGCGGTGGCCTCCTCCGGCGGC---GGCGAGGTGGAGGAGG
GGGAGGATCAGGAGACGGTGGTGGCGGAGGTGCGCAGGAAGGTGGACGAGGGCGCGCACGTGGTGCTGGGCCGGGACGTG
TTCGTGCTGTGGGTGCGCGCCGGCTTCGACGCCGCCTTCGCCATGGGGATCGTGCTCGTGCTCGGCCGCATCACCGGGGA
CGAGCTCGACGGCGTCCTCGGCGAGGAGCTGCTCCTCGAGGCCACCTCGCCGGTGTAGTAGGCCCTGCTG-------GAG
--------------CTCTGTC-CCTCTCTTTTTTGGCTT-----ACGCAGGCAGGGTCGTCGCTTGGTCTGTGATGCGCA
TCTCG----CGGACCCCTGGCTGGCATTGTTGCCCAGCAAGCAAAGC------------TTGGATCGAGATTGTAGCTTT
GAGTGAACATGGACA--------------CTGCACTGCTTGATTATTGCATTAGTTTTGATC--ATTATATAA---GTAT
TATCTGGAATTATTAAACACAGTGTTATGAAAGTCTTCTATACCTAGTGAAGATTCGGATC-------------------
CATGCGATTGGATCCAATAGCGAGCTCACGATTCCTGCAAATTAAGCGATA---------------------------CG
TCTGGTGCAAAGCGTAACTGCGAGCGCTGAATTACTAGTGACATCGAATCATCGAATTTACCAGG-ACCACTCTAATGTG
ATAAATCCAAACACTTCATTAACTTTTGTGGTCAAATTA--AAAAAAATGACTGCAATTCATCCTGAAACGATGGCATAA
ACCAGTGCCGACGCCCGACTGCATTGTCTTGTA---TCTCGATTGCCTCGTACTATAATATTGGTGATCCACCTGAGCT-
----GCCTCGCCACGAGGTGTGCGTATTTAGAAATTCAGAGTCAGCAAGTTGGAAACTGAGAACAACGTGGTGTGGCAGT
GAAGAGAAGGCGGTGCTTTTCAGACTGAGAAATTAAGCTGTGTTTTG-----------TACCTACAAAAGATTCGGGTTT
GGTCATGCGACTGGATCCAAT-----------------------------------------------------------
-------------------------CGCTCAGGACTCGTGGAATTAAGAGGC----------AGTAGAAGCTACATT---
ACTAGTGATAGCAAATTTACTTCTGTGT---------AAATTGCAAGGTCAAAATTTCAGAAAAGAAGACCATCAGGA--
----------------------------------------------------------AACATTGGCCGTAGCC------
--GTGCACCATCTTCAGCCTCGATTGCCCCGTATAATTTCGGTGGTCCACCTGACCTACCTCGCTACGATGTGTATGCAT
TTTCAAAATTCAGGGTCAGCAAATTGGAAACTGGAGCCCAGTTTGTGTGGCAGTGAAGCGAAGCTGGTGCTTTCAGGCCG
AGAAATTAAACGTGCAACCTCT-
>chr1B_895
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--------------AGCCGACGCGCACCACCGCCCACGCTATTTACCACCTCGTTCTACGCGCGG-GAGACAGGCAGACG
AGAGCGGAGAGCTATACCCGAGGCCGAG--CAAGCAGGAGAGGGAGATGAAGGGGGAAGAGGCGCCGC------CGGCGA
CGGTGGTGGTGGGGGAGGAGCACTGCGAGATGGAGGACAGGGAGCTGACGGTGCGCAAGACCACGCTCTTCTCCCCGGGG
GACGGGCTGGAGGCCTACGACCACCGCACGGGCGAGCTCGCCTTCCGCCTCGAGACGTACGGCCGGGGAGGCGCCTGCGG
CGGGGGCGCGGCGGCGGGGGACCTGGCGCTGCTGGGCGCCGCGGGGGACCCCGTGCTCACGGTCCGCAGGCGCCGCCCCA
GCCTGCACCACCGCTGGGACGGCTTCCTGGGCGACGGGGG---CGCAGCCGGCGCCAAGCCGCTCTTCTCCGCCCGCCGC
TCCTCCATCCTCGGCGCCGGGGCCGGGGTCCTCGTCGACCTCCTCGCCCCCGCCCATG---CCGCAGCCAAGGAGTTCCG
CGTCGACGGGTCGTTCCCGAGGCGGTGCTGCCGCGTCGTGGCGGTGGCCTCCTCCGTCGGC---GGCGAGGTGGAGGA--
-------TCAGGAGACGGTGGTGGCGGAGGTGCGCAGGAAGGTGGACGAGGGCGCGCACGTGGTGCTGGGCCGGGACGTG
TTCGTGCTGTGGGTGCGGGCCGGCTTCGACGCCGCCTTCGCCATGGGGATCGTGCTCGTGCTCGGCCGCATCACCGGGGA
CGAGCTCGACGGCGTCCTCGGCGAGGAGCTGCTCCTCGAGGCCACCTCGCCGGTGTAGTAGGCCCTGCTGCCTGCTGGAG
--------------CTCTGTGACCTCCTTTTTTTGGCTGACGCAACGCAGGCAGGGTCGTCGCTTGGTCTGTGATGCGCA
TCTCGCGGACGGACTCCTGGCTGGCATTGTTGCCTGGCAAACAAAGCTTTAAGCTTGGATTGGATCGAGCTTGTAGCTTT
GAGTGAACATGGACATGAT-----CTCCACTGCACTGTTGGATTATTACATTAGTTTTGATA--ATTATATAGTACGTAC
TATCTGGAATTATTAAACACGGTGTTATGAAAGTCTTGTATACCTGCTGAAGATTCGGATCTGATGGGGATCTACACATC
CATGCGATTGGATCCAATAGCTCGCTCATGAATCCTGCAAATTAAGTTACCTTTTTTTTTGCGAGTAATTAAGTTACCTA
TTTGGTGCAAAACGTAACTGCGCGCGCTGAATTACTAGTGACATCGAACCATCGAATTTACCAATAACCACTCTAATGTG
ATAAATCCAAACACTTAATTGTATTTTGTGGTCAAATTTTCAAAACATTGACTGCAATTCATCTTGAAACGATGGTATAA
ACCAGAG-------CCGACTGCATTGTCTTGTAGTATCTCGATTGCCTCGTACTATAATATTGGTGATCCACCTGAGCTG
CCTCGCCTCGCCACGAGGTGCGCATATTTAGAAATTCAGAGTCAGCAAGTTGGAAACTGGGAACAACGTGGTGTGGCAGT
GAAGAGAAGGCGGTGCTTT-CAGACTGAGAAATTAAGCGATGTTAAAGAGATCCCCTCTACCTACAAAAGATTCGGGTTT
GGTCATGCGACTGGTTCCAATAGCTCCTGGCTTGTAAATTACTCCCTCCGTAAACGCTCATATATTTCTCTACAGAGGGA
GTAACATCTATGTGATTGGATCTAACGTTCATGACTCATGGAATTAAGAGGTACTCCATACTAGTAGAAGCTAAATT---
ACCAGTGGCAGCAAATTAACTTCTGCGT---------AAATTGCAAGATCAAATTTTCAGAAAAGAAGACTATCATGAAA
CTTTTTTTTAATAGTTTGGATTGCTTATCACATGCGTCACATGATACGACTATCAGAAAACATTGGCACAAACCAAAGCC
GAGTGCGCCATCTTCAGTCTCGATTGCCCCGTATAATTTCGGTGGTCCACCTGAACTACCACGCTACAATGCGTACGCAT
TTTCAAAATTCAGGGTCAGCAAATTGGAAACTGGAGACCAGTTTATGTGGCAGTGAAGCGAAGCTGGTGCTTTCAGACCC
AGAAATTAAACGTGCAACCTCT-
>SNPs
---------------------------------S-------------S--SSSS-SSSSSS-SSS-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------------SSSSS-----------------------------------------
---------------------S---S---------------------------------------S--S-----------
-----------SSSS-SS----S---------S---S-------SS---------------------SSSSSS-------
-----------------------------S--------------------------------------------------
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----------------------------------------SSS---S--------------------------S------
--------------------------------------------------------SSSSS-------------------
------------------S-----------------------------------S------SSS----------------
-------S-----------------------------------------------------------S-----S------
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--------------S--------------------------------------------S-SSS-SS--SSSSS-SSSSS
SSSSSSSSSSSSSS--S-SS-------S--SS-SS--SS------S-----------S----------------------
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---------------S---SSSSS--S---------------S-------------------SS------S---------
-----------S-------S------------------------------------------------------------
-------------------------------S-S----------------------------------------------
------------------S--------------SSSSS-S----------------------------------------
--------------------------------S--------------------------------S--------S-----
------------------------------S-------------------------------------------------
----S----S-------------------S--------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------S--SS-SS-S-S--SSSSS-----------------------------------
------------------------------------------------------------------S----------SSS
----------------------------SSSSSSSSS---------------S----------------S----------
--------------------------------------------------------------------S-----S-----
-----------S----------------S----------SSS---S-S----S-----------------------S---
--------------------------S------------------------S----------------------------
----------------------S
>forward_668
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--------CATACCCGTACCCGCCTAAC----------------------------------------------------
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>reverse_1936
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---------------AGATCTCCACTGCACTGCAC---------------------------------------------
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