>input_sequence_70347
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---------------------------------------------------------------------------ATGGG
CAAGCTTGTGAGGCAATGTGACATGGAGGTCATGAAGATGGCCATGCTCAAGCACGAGGAGACCTTCAGGCAACAGGTAC
GTAGCAATTAATCTTCCTCCGTTCTTCTTCACCATATATAGCAAACTGTTGCGTGCTATGAAGTATGAACTGCTAATCAT
TTGCGTTGATAACCACCTTGCGCAGGTCCACGAGCTGCACCGCCTGTACCGCATCCAGACACAGCTCATGGGGGCCGACC
TGAGCACCCGCCGGCAGCCGCGGCGGCGCGGCAACAAGCAGCCACGCCGGGCGCTCAACCTGCAGCTCCCCGCCGACGAG
TACATCGTTGGCGCCGCCGACGAGGACGACGACGGCTGCGGCACGGGAGCAGAGCTGGAGCTGACGCTCGCCGTGGGAGG
GAGGAGGACCGGCTCCGGCACTTCCCGCAAGAACAACGTTAGCAAGAGAGGACAGGCCAAACACGACGGCGCCGCCGGCT
TCTCCTCACCCTTCGCTTCCGACTGCTCCGGCGGCACGAGCCTCTCGTCGTCGCCGCCGTCGTCGGCCGAGTACTCGGAG
AGCGCCTTCGGGGTGGCGCTCCACGGCGGTTACCCGGGGGTGGCCGCGCCGCCGCCGCCATGCCAGAGAGCCATGACGTT
CGACCTCGGCGTGGCGGAGGCGATGAAGCAGCACCAGTCGCCCTGGCAGCTGGTGCAGTGCCAGTACCTCAGCCTCAGGA
TGACATGA------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G085600
GCAGTAGAGCACACATGTACATGCAATGTTCATCATCAGGCCAAGTGGATATTATGAATCATACCATGTA---CCTTTGC
TTGTTTTCAGTGACAATCTGACAGCTCCATCTTACTAGGTTGTTGCTTGCTTGCTTGCTTGTTTGCACATACATACACAA
AGTTCCAAAGATATACTAGTAGTACTAAATGGAGCTGGAGGCTGAAGCAATGCATGGTACATGCATATCCATATCCTGCA
TTTGGGCGTGCCAATGATCAAGGCAACACCATGCATGTCACATGGAAACATTGAAGTAGTATAGTTTTGCATCACACACA
AAGTGTACAGGCTCACTGTTTGAAATGCACTCCTCCTCCTGAGCTAGTATGAGCAATATTAATTAGTAGTAGTAATATTA
GCAGTAGTTTCTGCAGGTGGGGCCAACCCAGGATTAAACAAGACTCTTGCAGGGGCTGTCTGCTCTTGGAGGGGCAGTGC
CTGGCCGTCCTTCATGCAAGTGCGTGCCACTGGGTCTCTTGTTGCTTGGCATGCCAAAAAGGTGGACTGCCAAAAGCAAA
AATATGTGTCTACCTAGTGTCCAGTGACAGGCATTCGCCATTGGAGGCAGCCAAGCAGCTGCGTCTGCGTTTATAAATGA
GCACCTCCCCTGCAACTGCAACTTCCATTCCCAGTTTCAGCATCAACACCTGATCTTTAGTCTTTCCTCCGTTCTATCTT
GCCTGTCCCTTGCAAGTTTGAGTGCAGAGGGAGCTGAAGAG--------AGCTAGATAGACAAGGGAGAGGACAAGTTCT
TGGCTTATAATTACAGGTCAGTTACTTCTCTGTGGTTTGCATGATCAATACTTGTCAAACATGCTGTTTGCATCTCTGGC
AGAGTCAGAGGT-------------------TGCTGTCAAGCATGACCAGAGTTGCTTCCTT----CAGATGGATGCTTA
CAAGTTTTTGAAATTTTAAATATAGGTTCTTCCACATTTCAGCAGGCTTAGAGCAAG-TTTGAGGTTGAGGAGAGATGGG
CAAGCTTGTGAGGCAATGTGACATGGAGGTCATGAAGATGGCCATGCTCAAGCACGAGGAGACCTTCAGGCAACAGGTAC
GTAGCAATTAATCTTCCTCCGTTCTTCTTCACCATATATAGCAAACTGTTGCGTGCTATGAAGTATGAACTGCTAATCAT
TTGCGTTGATAACCACCTTGCGCAGGTCCACGAGCTGCACCGCCTGTACCGCATCCAGACACAGCTCATGGGGGCCGACC
TGAGCACCCGCCGGCAGCCGCGGCGGCGCGGCAACAAGCAGCCACGCCGGGCGCTCAACCTGCAGCTCCCCGCCGACGAG
TACATCGTTGGCGCCGCCGACGAGGACGACGACGGCTGCGGCACGGGAGCAGAGCTGGAGCTGACGCTCGCCGTGGGAGG
GAGGAGGACCGGCTCCGGCACTTCCCGCAAGAACAACGTTAGCAAGAGAGGACAGGCCAAACACGACGGCGCCGCCGGCT
TCTCCTCACCCTTCGCTTCCGACTGCTCCGGCGGCACGAGCCTCTCGTCGTCGCCGCCGTCGTCGGCCGAGTACTCGGAG
AGCGCCTTCGGGGTGGCGCTCCACGGCGGTTACCCGGGGGTGGCCGCGCCGCCGCCGCCATGCCAGAGAGCCATGACGTT
CGACCTCGGCGTGGCGGAGGCGATGAAGCAGCACCAGTCGCCCTGGCAGCTGGTGCAGTGCCAGTACCTCAGCCTCAGGA
TGACATGAATGAATCAACTCCTTCGAAGCTCGTTGATCATATATATCATCATCATCCAA---------GCCATAGCCATG
GCATGATCGCATCGTACTAGCTAGTAGCTTGTGTTGCATTGTAGAAGCAGTAGCAATGGAGTATTTCTTATCTTTTTTTC
TTTCCTTTTTTGCTGTTGCTTAGATGCGTGCCATTGATGGAGCTCGGGGAGGATCGGGTTCTAAGTTACGATCCTGCTCC
CAA---GCTGCTAATTGCTTAATCATGACAAATGAGTGCATGCTGATTGATTAGTCATCGATGTTCAGAGTTGAGA----
TGTGAATTGATGAATAATATGCCATGTTCATGATTTGTACTCCATTTCTTGATGCGTGCATGCATGCATGCA----AAGG
TTCACAGGAAAAAGGTCAATTGCAGTAAAAAAAAAGGTGATAATCAGAGGAACAGAAGTGCAGGGAAACTAGTGTAGAAA
GCATGAAAAGTGAATAGTGGCACACAGA-------GAGAAGGAGGCTACGTTTACAGTGCAAAAGGTTGCCGTTGTTGAT
------GGACAATGGATGTGGTCATGAAGAGATGCAAATTAACATGGAATTCAGATGTTTTGATCAGAATTACAAAATGG
TGGAGATGAAGTCATGGAGGAGTAGGTCCTCACTTTCTGTCTCTCTCTCATGACTGATATCCTGATGGAACTTTGAAGGC
AGAAACAAAGGAAATGTGCATTGACGCATGCATGCCAAAAAGTTACAGGGAGGAATAGATCAAGTTCCAGCACAAAATTT
CGAAAGAAGTTACAGATTTTGTGCAATTAGTGGTTGCTTTGGTACAGTACCAGCTATTCAAAGCCCAAGAGATTATGTTT
AGTAAAATCAAATTTTCCTCCAAAATGACGAAAAGAAGAGAGAAAAAAATGCATCCATGCTTGCATATATAGGGAGCATT
CCTAATTAAATAGAGAAGTATGTGAGAGCTAGGCACCAGCCCAAAGCTGAAGAAATCTCAAGTAAAACCATTTTTTTTCT
G
>chr5A_1
GCAGTAGAGCACACATGTACATGCAATGTTCATCATCAGGCCAAGTGGATATTATGAATCATACCATGTA---CCTTTGC
TTGTTTTCAGTGACAATCTGACAGCTCCATCTTACTAGGTTGTTGCTTGTTTGCTTGCTTGTTTGCACATACATACACAA
AGTTCCAAAGATATACT---AGTACTAAATGGAGCTGGAGGCTGAAGCAATGCATGGTACATGCATATCCATATCCTGCA
TTTGGGCATGCCAATGATCAGGGCAACACCATGCATGTCACATGGAAACATTGAAGTAGTATAGTTTTGCATCACACACA
AAGTGCACACG--CACTGTTTGAAATGCACTCCTCCTCCTGAGCTATCAGG----------AT---------TAATATTA
GCAGCAGTTTCTGCAGGTGGGGCCAACCCAGGATTAAACAAGGCTCTTGCAGGGGCTGTCTGCTCTTGGAGGGGCAGTGC
CTGGCCGTCCTTCATGCAAGTGCGTGCCACTGGGTCTCTTGTTGCTTGGCATGCCAAAAAGGTGGGCTGCCAAAAGCAAA
AATATGTGTCTACCTAGTGTCCAGTGACAGGCATTCGCCATTGGAGGCAGCCAAGCAGCTGT------GTTTATAAATGA
GCACCTCCCCTGCAACTGCAACTTCCATTCCCAGTTTCAGCATCAACACCTGATCTTTAGTCTTTGCTCCGTTCTATCTT
GCTTGTCCCTTGCAAGTTTGAGTGTAGAAGGAGCGAGCTGAAGAGAGCTAGCTAGATAGACAAGGGAGAGGACA-GTTCT
TGGCTTATATTTACAGGTCAGTTACTTCTCTGTGGTTTGCATGAGCAATACTTGTCAAACATGCTGTTTGCATCTCTGGA
AGAGTCAGAGGATGTTCACCATCATGAATCATGCTGTCAAGCATGACCAGAGTTTCTTCCTT----TAGATGGATGCTTA
GAAGTTTTTGAAATTTTAATTATAGGTTCTTCCACATTTCAGCAGGCTTAGAGCAAG-TTTGAGTTTGAGGAGAGATGGG
CAAGTTTGTGAGGCAATGTGACATGGAGGTCATGAAGATGGCCATGCTCAAGCATGAGGAGACCTTCAGGCAACAGGTAC
GTAGCAATTAATCTTCTTCGGTTCTTCTTCACCAGATATAGCAAACTGTTGCGTGCTATG-------AACTGCTAATCAT
TTGCGTTGCTAATCACCTTGCGCAGGTTCACGAGCTGCACCGCCTGTACCGCATCCAGACACAGCTCATGGGGGCCGACC
TCAGCACCCGCCGGCAGCCGCGGCGGCGCGGCAACAAGCAGCCACGCCGGGCGCTCAACCTGCAGCTCCCCGCCGACGAG
TACATCGTTGGCGCCGCCGACGAGGACGACGACGGCTGCGGCACCGGGGCTGAGCTGGAACTGACGCTCGCCGTGGGAGG
GAGGAGGACCGGCTCCGGCACCGCCCGCAAGAACAACGTTAGCAAGAGAGGACAGGCCAAACACGACGGCGCCGGCGGCT
TCTCCTCCCCCTTCGCTTCCGACTGCTCCGGGGGCACGAGCCTTTCGTCGTCGCCGCCGTCGTCGGCCGAGTACTCGGAG
AGCGCCTTCGGGGTTGCGCTCCACGGCGGTTACCCGGGGGTGGCGGCA---CCGCCGCCGTGCCAGAGAGCCATGACGTT
CGACCTCGGCGTGGCGGAGGCGATGAAGCAGCACCAGTCGCCCTGGCAGCTGGTGCAGTGCCAGTACCTCAGCCTCAGGA
TGACATGAACGAATCAACTCCTTCGAAGCTCGTTGATCATATATATCATCATCACCATCCAAGCCATGGCCATGGCCATG
GCATGATCGCGTCGTACTACTTAGTAGCTTGTGTTGCATTGTAGAAGCAAGTAGCCATGAGTATTCCTTATC---TTTTC
TTTCCCTTTTTGCTGTTGCTTAGATGTGTGCCATTGATGGAGCTCGGGGAGGACCGGGTTCTGAATTCCGATCCTCATCC
CAAGCTGCTGCTAATTGGTTAATCATGACAAATGAGTGCATGCTGATTGATTAGTCATCGATGTTCAGAGCCGAGACTGG
TGTGAATTGATGAATAATATGCCATGTTCATGATTTGTACTCCATTTTTTGATGCGTGCATGCA----TGCA----AAGG
TTCACAGGAAAAAGGTCAATTGCAGTAAAAAAGT------------GAGGAACAGAAGTGCAGAGAAACTAGTATAGAAA
GCATGAAAAGTGAATAGTGGCACATACCACATAGGGAGAAGGAGGCTACGTTTACAGTGCAAAAGGTTACAGTTGTTGAT
GGACAAGGACAATAGATTTGGTCATGTAGAGTTGCAAATTAACATGGAATTCAGATGTTTTGAACAGAATTACAAAATGG
TGGAGAT-AAGTCATGGACGAGTTGACCTTTCTCTCTCG----TCTCTCATGATTGATA---------------------
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>chr5B_51
--------------------------------------------------ATTATGAATCATACCATGTAGGACCTTTGC
TTGTTTTCAGTGACAATCTGACAGCTCCATCTTACTAGGTTGTTGCTTGCTTGCTTGCTTGTTTGCACATACATACACAA
AGTTCCAAAGCTATACT---AGTACTAAATGGAGCTGGAGGCTGAAGCAATGCATGGTACATGCATATCCATATCCTGCA
TTTGGGCATGCCAATGATCAGGGCAACACCATGCATGTCACATGGAAACATTT-----GTATAGTTTTGCATCACACACA
AAGTGCACACG--CACTGTTTGAAATGCACTCCTCCTCCTGAGCTAGTAGGAGCACTGTTAAT---------TAATATTA
GCAGCAGTTTCTGCAGGTGGGGCCAACCCAAGATTAAACAAGACTCTTGCAGGGGCTGTCTGCTCTTGGAGGGGCAGTGC
CTGGCCGTCCTTCATGCAAGTGCGTGCCACTGGGTCTCTTGTTGCTTGGCATGCCAAAAAGGTGGGCTGCCAAAAGCAAA
AATATGTGTCTACCTAGTGTCCAGTGACAAGCATTCGCCATTGGAGGCAGCCAAGCAGCTGCTTCTGCGTTTATAAATGA
GCACCT-CCCTGCAACTGCAACTTCCATTCCCAGTTTGAGCATCAACACCTGATCTTTAGTCTTTCCTCCGTTCTATCTT
GCTTGTCCCTTGCAAGTTTGAGTGCAGAACGAGCTGAAGAG--------AGCTAGATAGACAAGGGAGAGGACAAGTTCT
TGGCTTATAATTACAGGTCAGTTACTTCTCTGTGGTCA----GATCAATATTTGTCAAACATGCTGTTTGCATCTCTGGC
ACAGTCAGAGGTTGTTCACCATCGTGAACCATGTTGTCAAGCATGACCAGAGTTCCTTCCTTCAGATAGATAGATGCTTG
CAAGTTTTTGAAATTTTAAATAAAGTTTCTTCTACATTTCAGCAGGTTTAGAGCAAGTTTTGAGTTTGAGGAGAGATGGG
CAAGCTTGTGAGGCAATGTGACATGGAGGTCATGAAGATGGCCATGCTCAAGCACGAAGAGACCTTCAGGCAACAGGT--
-TAGCAATTAATCTTCTTCACTTCTTCTTCACC----ATAGCAAACTGTTGCGTGCTATG-------AACTGCTAATTTA
-----TTGATAATCACCTTGCGCAGGTTCACGAGCTACACCGCCTGTACCGCATCCAGACACAGCTCATGGGGGGCGACC
TGAGCACGCGCCGGCAGCCGCGGCGGCGCGGCAACAAGCAGCCACGCCGGGCGCTCAACCTGCAGCTCCCCGCCGACGAG
TACATAGTCGGAGCCGCCGACGAGGACGACGACGGCTGCGGCACCGGAGCAGAGCTGGAGCTGACGCTCGCCGTGGGAGG
GAGGAGGACCGGCTCCGGCACTTCCCGCAAGAACAACGTTAGCAAGAGAGGACATGCCAAACACGACGGCGCCGGCGGCT
TCTCCTCACCCTTCGCTTCCGACTGCTCCGGCGGCACGAGCCTCTCGTCGTCGCCGCCGTCGTCGGCCGAGTACTCGGAG
AGCGCCTTCGGGGTGGCGCTCCACGGCGGTTACCCGGGGGTGGCCGCGCCTCCGCCGCCATGCCAGAGAGCCATGACGTT
CGACCTCGGCGTGGCGGAGGCGATGAAGCAGCACCAGTCGCCCTGGCAGCTGGTGCAGTGCCAGTACCTCAGCCTCAGGA
TGACATGAATGAATCAACTCCTTCGAAGCTCGTTGATCATATATATCATCATCATCCAA---------GCCATGGCCATG
GCATGATCGCATCGTACTACTTAGTAGGTTGTGTTGCATTGTAGAAGCAGTAGCTATGGAGTATTCCTTATC---TTTTC
TTTCCTTTTTTGCTGTTGCTTAGATGCGTGCCATTGATGGAGCTTGGGGAGGATCGAGTTCTGAATTCCGATCCTGATCC
CAA---GCTGCTAATTGCTTAATCATGACAAATGAGTGCATGCTGATTGATTAGTCATCGATGTTCAGAGCTGAGACTGG
TGTGAATTGATGAATAATATGCCATGTTCATGATTTGTACTCCATTTTTTGATGCTTGCATGCA----TGCATGCAAAGG
TTCACAGGGGAAAGGTCAATTGCAGTAAAAAA-AAGGTGATAATCAGAGGAACAGAAGTGCAGAGAAACTAGT--AGAAA
GCATGAAAAGTGAATAGTGGT-------ACATAGGGAGAAGGAGGCTACGTTTACAGTGCAAAAGGTTGCCGTTGTTGAT
------GGACAATGGATGTGGTCATGAAGACTTGCAAATTAACATGGAATTCAGATGTTTTGAACAGAATTACAAAACGG
TGGAGATGAAGTCATGGAGGAGTAGGTCCTCACTTTTTGTCTCTCTCTCATGACTGATATCCTGATGGAACTTTGAAGGC
AGAAACAAAGGAAATGTGCATTGACGCATGCATGCCAAAAAGTTACAGGGAGGACTAGATCAAGTTCCAGCACAAAATTT
CAAAAGAAGTTACAGATTTTGTGCAATTAGTGGTTGCTTTGGTACAGTACCAGGTATTCAAAGCCCAAGAGATTATGTTT
AGTAAAATCAAATTTTCCTCTAAAATGACGAAAATAAGAG-GAAAAAAATGCATCCATGCTTGCATA----GGGAGCATT
CCTAATTGAACAGAGAAGCATGTGAGAGCTAGGCACCTGCCCAAAGCTGAAGAAATCTCATGTAAAACCTTTTTTTTCTG
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>SNPs
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-----------------SSS------------------------------------------------------------
-------S------------S-----------------------------------------------------------
-----S---S-SS------------------------------------S-----S-S-----SSSSSSSSS--------
----S---------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------S-----------------
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--S-------------------------S---------------------------------------------------
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------------------------------------------------------S-----------S-------------
----------------------------------------------------------------S---------------
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----------------S--S--------------S-------------------------SSSSSSS-------------
------------S--------------S----------------------------------------------------
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--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------S-----
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--------------------------------------------------S-----------------------------
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-------------------------------------------------------------------------S------
-------------------SS---------------------------------S----------S------SSS-----
--------------------------------------------------------------S-S--S--------S---
----------------------------------------------------------------------S---------
-----------------------------------------------S----------------SSSS------------
--------------------------------S------------------------------S---------S------
------------------------S-SS----------------------------------------------------
-------------------------------S-------------------------------S----------------
------------------------------------S-------------------------------------------
------------------------------------------------------S-------------------------
-S---------------------------------------------------S--------------------------
--------------------S-------------S-----S--------------------------SSSS---------
-------S--S-------S------------------S----------------------S--------S-------SSS
S
>forward_248
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--------------------------------------------------------------------CCATATCCTGCA
TTTGGGCG------------------------------------------------------------------------
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>reverse_2145
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----------------------------------------------------------------TGCATGCAAAGGTTCA
CAGG----------------------------------------------------------------------------
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