>input_sequence_70345
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----------------------------------------------------ATGGCGCTAACCAGATCAATGGTTTTGC
TCCTGACGTACGCCGCACTCGCAGCGGCGACGATGCGACGACCGGAAGAGAGGACACAGGCGGTCAAGGCGCCATCAGTG
CCATACCTCGCCGGAGGCCAAGAAGCCGAAGCCGAAGCGGTAGCGGCTACCTCCTCGCCGGCCTCACCAAT------CAC
CGACGTCGAGGTCTTCATCCCGGCACCGCCGCCTCTGCCTGGCATGCCCGCGTTACCGCCGTTGCCCGGCTCCCCGGGCA
TGGCAGGCGCGCCATCGCCTTC------------GCAGCAGCCGGCCAGTTGCTTGGGAGCGCTCGGGCGTGTGATAACA
TGCGCGCCGTACCTCACCGACTCCGTACCCGTGCCGCCGAGTACATGCTGCGACGGCTTCAGGTCGCTCGTCGGCAGCAG
CGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACTTGAGTACATTGGCCGGGGGGGAGATCGACCAGCTTCGCTTGC
TCGTGCTGCCTCTGACGTGTAGCACGTTCGTGCCCCCGGACTTGCTTCTCATGTGCATCCGTGAGTTTGAAACATCCTTG
TCTGCTTTACTCCTTTATTACTAGTACATCGTAAGAGATTCATTTGTATGTACGTATATCAACTTACGAAATAAACTGTC
TTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACTACCGCGCCGGTGTCGGAGAAAGGCTCGGTGCTCTCGGCGGC
TAG-----------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G196400
GGAGATATACTATGAGATTGCCGACTAGTGTTAGGCCTACGGGCCTTTTTCATCTCTTTTCATGTTTTCTTTTTTTTTTT
CCTCTCTTGATCACTTGATCACCCCATGTTTTCATGCTACCCCTGCTAACCAGCAAGATGCTGGATCTCTCTCTCTCTCT
CTCTCTCTCTCACACACACACACACACACACGACTGCTGAGGTGAAAGGCCACGCCGGGCTGTAGGGCAATTTCCTCTGT
TCACTCTGCCGTGGTTGTAACTGCCTCTCACTGAAATGAAAATTCAGGCACCGGTTGGAAGTTTCAGAAGAAAATGGGAG
AGCAATCTGTCCACAGGTAAAGGGGATTGATAAGATGCAGCTTGGACGACTCATCAGCAGTACGCGATGCAGGGAAAAAC
CATCACCAATCTTCTACTACTTCTGATAG------GCGTGGTGCTTTCCAGAAGACAGAGGTTATAATGTGGGTGTCATT
CTAAGTTCATCGCTTCGATTCTCGCATTTACTCAAGTTAGGAATAGAAATCCAATAGTGGCTCATTTCAGATTCGTAATT
TGGTGGCTATATATCTGATAGTTATTTTCCGGTCTCCTGGTGAACAAGCTCGGAATCAGACTGGCATGGACACCGAAGAT
TTAGAGCAAGAAAAC-----AAACTCTCAGCTAGATCAAAACAGAACAACACATCCTACATCCATACTGTACCTCGGAAG
ATGCCTCTCAGCCGCAAAATG-ACTCAACAGAACAATGCTTACCTACTCTCAGTAACCTCCAAGGAAATTGTAAAGAACG
TGAGTCGCGCCTACGGTTCAGTCAAACAAAAACAAAGACAAAGATGATGATGAATTGACGCCCGGACGCCGCTACTAAAT
GACGAAGACAGCAAGATGAGCACGCCACACCTGAGTTGATCCAAGTTGAGCACACTTACTCCATACCTGAGTTGATCCAA
GTTGAGCACACTTACTCCATACCTGAGTTGATCCAAGTTGAGCACACTTGCAATGGCGCTAACCAGATCAATGGTTTTGC
TCCTGACGTACGCCGCACTCGCAGCGGCGACGATGCGACGACCGGAAGAGAGGACACAGGCGGTCAAGGCGCCATCAGTG
CCATACCTCGCCGGAGGCCAAGAAGCCGAAGCCGAAGCGGTAGCGGCTACCTCCTCGCCGGCCTCACCAAT------CAC
CGACGTCGAGGTCTTCATCCCGGCACCGCCGCCTCTGCCTGGCATGCCCGCGTTACCGCCGTTGCCCGGCTCCCCGGGCA
TGGCAGGCGCGCCATCGCCTTC------------GCAGCAGCCGGCCAGTTGCTTGGGAGCGCTCGGGCGTGTGATAACA
TGCGCGCCGTACCTCACCGACTCCGTACCCGTGCCGCCGAGTACATGCTGCGACGGCTTCAGGTCGCTCGTCGGCAGCAG
CGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACTTGAGTACATTGGCCGGGGGGGAGATCGACCAGCTTCGCTTGC
TCGTGCTGCCTCTGACGTGTAGCACGTTCGTGCCCCCGGACTTGCTTCTCATGTGCATCCGTGAGTTTGAAACATCCTTG
TCTGCTTTACTCCTTTATTACTAGTACATCGTAAGAGATTCATTTGTATGTACGTATATCAACTTACGAAATAAACTGTC
TTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACTACCGCGCCGGTGTCGGAGAAAGGCTCGGTGCTCTCGGCGGC
TAGGCCATTGGCGTGCTCTGGAAAAGGA----GGAGTGTCTATTTAGAAGTCGACTGAAATTGAATTAGGCTTCAGTCGA
ATTCCTGTATGTCTATCATCTATGTTCCCCGCGCACTGCATGTATGTCAATTTTCATCTGATATCTCACACCCGGGCCTT
GTATGCATGTGC-TTGACGGGTTGGCCTTGTATTGTATGTACGCTGGACTGGACCCGCTACCAAAACAGCAGAACAAAAA
CTACAGGGGGAAAAGCCTACAGACTCAACAACTGAGTCCTCAGAACACCTTATGCGCAAAAAAAAAAGAGTCCTCAGAAC
ACCTAAACTAATGGGGCTC-AAAAAAAGACTATGGACATGCGCTAGTACCACGCTGAACATTATTGCCAGCAAAAAGAAG
AGGCAAACGGACCAAAAAGACACCCAATCAACTTGCTTCTCTTGCAAAAAATAGAGGCTTCTACAAACTCAAAAACATAA
AACCTCTCCTTCTTTGCCTCTGAACACAATACTGTAGTAAGAAGGAACAATAAATAAGTTACAGTGTAATTACATTAAAG
CTACCCCGCAAAAAAATTTACATTAAAGCTGTGATTACACTGAAAATTATCAGTGTAATTACATTAGAAAACACCGTGAT
TACACTATAATTCACAAATGTAATTACACTTAAAATACAGTGTAATCACTGTTCAATTTTACTGCATATACCCTATGATA
TAGAATGAAATTATACTTTTTTTTACAAATGTCAAAGAATCCCGCTAATTACACTGTTTAACCCTTACATTGTAAAATTA
GGCAATTACAATCTTGTTCACAGAGAGTTCCAGCCATAAAACACAGTAAATTGACATTTTCAGATATTACATTTTGTGGT
AAAGGTTGACATTTAGATACAGAGACTTTATTTGCATTCTTGCTATTGACATGTTGCAGATAGTTTAATCTGTTGACATG
TTCAAAATTTCCATGCACACACAGGAAACTGTGGGCTCATGTTGACAAT
>chr2A_1
GGAGATTTACTATGAGATTGCCGACTAGTGTTAGGCCTACGGGCTTTTTCCCTCTCTTTTCATGTTTTCTTTCTCTTTTC
TCTCTCTTGATCACTTGATCACCCCATGTTTTCATGCTACCACTGCTAACCAGCAAGATGCT------------------
----------------------------------------------AGGCCACGCCGGGCTGTAGGGCAATTTCCTCTGT
TCACTCTGCCGTGGTTGTAACTGCCTCTCATTGAAATGAAAATCCAGGCACCGGTTGGAAGTTTCAGAAGAAAATGGGAG
AGCAATCTGTTCACCGGTAACGGGGATTGATAAGATGCAGCTTGGACGACTCATCAGCAGTACGCGATGAAGGGAAAAGC
CATCACCAATCTTCTACCACTTCTGATAGCGATAGGCGTGGTGCTTTTCAGAAGACAAAGGTTATAATGTGAGTGTCATT
CTAAGTTCATCGCTTCGATTCTCGCATTTACTCAAATTAGAAATAGAAATCCAATAGTGGCTCATTTCAAATTCGTAATT
TGGTGTC----TATCTGAAAGTTATTTTCGGGTCTCCTGGTCAACAAGCTCGGAATCAGACTGGCATGGACACCGAAGAT
CTAGAGCAAGAAAAGAAAAGAAACTCTCAGCTAGATCAAAACAGAACAACACATCCTGCATCCATACTGTACCTCGGAAG
ATGCCTCTCAGCCCGCAAAATCACTCAACAGAACAATGCTTACCTACTCTCAGTAACCTCCAAGGAAATTGTAAAGAACG
TGAGTCGCGCCTACGGTTCAGTC------AAACAAAGACAAAGATGATGATGAATTGACGCCCGGACGCCGCTACTAAAT
GACGAAGACAGCAGGATGAGCACGCCACACCTGAGTTGATCCAAGTCGAGCACACTTACTCCA-----------------
----------------CCGTACCAGAGTTGATCCAAGTTGAGCACACTTGCAAGGGCGCTAACCAGATCGATGGTTTTGC
TCCTGACGTACGCCGCACTCGCAGCGGCGACGATGCGACGGCCGGAAGAGAGGG--------------------------
-CACACCTC---------------GCCGAAGCCGAACCGGCAGCGGCTACCTCCTCGCCGGCGCCGGCTCCACCGTACAC
CGGCGTCTCGGTCTTCATCCCGGCACCGCCGCCTCTGCCTGGCATGCCCGCGTTACCGCCGTTGCCCGGCTTCCCGGGCA
TGGCAGGCGCGCCATCGCCTTCTCCTTCGCCTTCGCAGCAGCCGGCCAGTTGCTTGGGAGCGCTCGGGCGTGTGATCACG
TGTGCTCCGTACCTCACCGACTCCGTGCCCGCGCCGCCGAGTACCTGCTGCGACGGCTTCAGGTTGCTCGTCGGCAGCAG
CGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACTTGAGTACATTGGCAGGGGGGGAGATCGACCAGCTTCGCTTGC
TCGTGCTGCCTCTGACGTGTAGCACGTTCGTCCCCCCGGACCTTCTTCTCATGTGCATCCGTGAGTTTGAAAGATCCTTG
TCTGTTTTACTCCTTTATTAGTCGTA-----TAAGAGATTCATTTGTACGTACGTATATCAACTTACGGAATAAACTGTC
TTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACGACCGCGCCGGTGTCGGAGAAAGGCTCGGTGCTCTCGGCGGC
TAGGCCATTGGCGTGCTCTCGAAAAGAAGAAGGGAGTGTCTATTTAGAAGTCGACTGAAATTGAATTAGGCTTCAGTCGA
ATTCCTGTATGTCTATCATTTATGTTCCCCGCGCACTGCATGTATGTCAATTTCCATCTGATA--TCACACCCGGGCCTT
GTATGCATGTGCGTTGACGGGTTGGCCTTGTATGTA--------------------------------------------
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>chr2B_1071
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------------------------------------------CGGAAGAGAGGGCACAGGCGCTCAAGGCGCCATCAGTG
CCACACCTC---------------GCCGAAGCCGAACCGGTAGCGGCTACCTCCTC------GCCGGCTTCACCGTACAC
CGGCGTCTCGGTCTTCATCCCGGCACCGCCGCCTCTACCTGGCGTGCCCGCGTTACCGCCGTTGCCCGGCTTCCCGGGCA
TGGCAGGCGCGCCTTCGCCTTC------GCCTTCGCAGCAGCTGGCCAGTTGCTTGGGACCGCTCGGGCGTGTGATAACT
TGCGCTCCGTACCTCACCGACTCCGTACCCGCGCCGCCGAGTACATGCTGCGACGGCTTCAGGTCGCTCGTCGGCAGCAG
CGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACCTGAGTACATTGGCCAGGGGGGAGATCGACCAGCTTCGCTTGC
TCGTGCTGCCTCTGACGTGTAGCACGATCGTGCCCCCGGACTTGCTTCTCATGTGCATCCGTGAGTTTGAAACATCCTTG
TCTGTTTTACTCCTTTCTTAC------ATCGTAAGAGATTCATTTGAACGTACGTATATCAACTTACCAAATGAACTGTC
TTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACTACGGCGCCGATGTCAGAGAAAGGCTCGGTGCTCTGGGCGGC
TAGGCCATTGGCGTGCTCAGA------A----GGAGTGTCTATTTAGAAGTCGACTGAAATTGAATTAGGCTTCAGTCGA
GTTCATGTATGTCTATCATCTATGTTCCCCGCGCACTGCATGTATGTCGATTTTCATCTGATA--TCACACCCGGGCCTT
GTATGCATGTGTGTTGACAGGTTGGCCT------GTATGTACGCTGGACTGGACCCGCTACCAAAACAGCAGAAC-----
------------------------------------------------------------AAAAACTGAGTCCTGAGAAC
AACTGAACTAATGGGGCTAAAAAAAAAGACTATGGACATGCGCTAGTACCATGCTGAATATTATTGCCAGCAAAAAGAAG
AGGCAAACGGACCAAAAAGACACCCAATCAACTTGCTTCTCTTGCAAAAAATAGAGGCTTCTACAAACTCAAAAACATAA
AACCTCTCCTTCTT------------------------------------------------------------------
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>SNPs
------S-------------------------------------S----S-S--------------------S-S----S
S----------------------------------------S--------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
------------------------------S------------S------------------------------------
----------S---S-----S------------------------------------------------S--------S-
-----------------S-----------------------------S---------S-------------S--------
-----------------------------------S----S----------------------------S----------
-----S-SSSS-------S----------S-----------S--------------------------------------
S-------------S------------------------------------------S----------------------
-------------SSS---SS-----------------------------------------------------------
-----------------------SSSSSS---------------------------------------------------
-------------S--------------------------------S----------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--S----S-----------------------------S---------------S----------
----------------------------------------S------------S--------S-----------------
---S-----SSSSSSSSSSSSSSS------------S-------------------------SS-SS-SSS---------
--S----SS--------------------------------------------------------------S--------
-------------------------------------------------------------------------------S
-----S-------------------------S------------------------------------------------
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----S-----------------S---S---------------------S-------------------------------
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--------------------------S-----------------------------------------------------
---------------------------------------------------------------SS---------------
---------------------------------S-----------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS-------S-----
-S--S-------------S--------------------------------S------S---------------------
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--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_195
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---------------ACACACACACACACACGACT---------------------------------------------
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>reverse_2003
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--ACAGGGGGAAAAGCCTACAG----------------------------------------------------------
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