>input_sequence_70344
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-------------------------------------------------------------TCCCGAAATTTACCAAAAT
GCCACTCTTCTCCTCCAAATTCGCGCCGCTGATCCCCCGCCTCCGCCGCCTCTCCACGGCGGCGGCGACCGCCGCCGGCG
AGGACCCGAAGCTGTCGCGCATCGCGGACGAGCTCCTGGCGCTCTCCTCGGCCGAGCTGGATGACTACTCGGCCCTCATG
CGCCTCAAGCTACGCCTCTCGCTCACCTCCAACCCAGCTGCCGGATTAGGTCCTGGCGCAGCCGGGGATGCGGCCTCCGG
GTCGGCGGGGGCCGAGGAGGCCGCGGCGGTGAAGACGGCGTTCGACGTCAAGATCGAGAAGTACGACGCGGCGGCCAAGA
TCAAGATCATCAAGGAGGTGCGCGCGATGACGGACCTGGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCGCCGGTC
GTGGTGCGCGCGGGGCTGCCCAAGGAGGAGGCCGAGGCTCTCGCCGCCAAGCTCAAGGCCGCCGGAGCTGCCGTTGCGCT
CGAGTGATCCAGAGCCGTAAGGTGTCCCCATTTTCGATTCCTACCGTTCCTAGATGATGCAAATCTTATGTGTGTGTTAA
TTTGTTTTGAATTGGAGTTTGTTGGGATTGGAGCAATTAGGTAGGGGTATAAGAAGATGCAGGGTTTGCTTGCATTGTTG
TAGCTTATGACTAGCCTCGAAGCATAATCACTGGTATATCTTCCTGGATCACGCAATAAGGTGTTGCTGTGTTG------
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>chr2D_1_TraesCS2D01G167800
TGCATAGGCCATTCATGCACACAACCAGCATACCGAAACCACAGAATTTATTATATCAAAACCACAGAAT----TTACTC
CAGAGCATAACGAAACCACAAAAAACACCCGAACAGAAAAACGACAATGGCCACTATGATTTCCTCTCACAGAACAGACC
TACGCCTAAACCCTTCATAAA-CCCCCCTCAAATCCAGCGTGTTAATGCCTAACCATCTGAACAATGTCCGAATCGCACG
GGCGCATCAAAACCCTAGGAGGCGTGGACGGGCGTGATGAGCTCACCTAGCGACGGCCGCGCCGCGAGATCCCC-AACGG
TGCCGGCCGCAGACCGCCCTTCAGCGAGCCTCGAAATTCAGAAACCTGCAGGCATGCAGGCGCACCAGATCAAAACCCCA
AGCCACAAAACCCTACTGGAATTTTGCAAAGCACGCGACGGGACGGCGACTGCACGGACCGGCCGCCGCGGACCCCCGGA
GACCGCGCGCCCCCCGGAAGGAAACAACCCCCCAAAAAAAAAGGAGCGCCGAAAACCTCGCAAAAAAAGTCCCAAAAAAA
ACCGCAGCAAAAGGGAGCGGGCGGGAGAATCTAGCAGACTACGACTCCATGGGAGGGGGAGGAGAGGAGGC--------G
GAGTGCGGAATCGATTTTCGCATGATCGGGACCCGTGATTCTACCCGCCGGCCGCCGCGGCGTCGATTCCGACGAGGGTT
TTGCTTTCGCCCCGCCGCGCCGCGGCCAGAGAGAGAAGAGAATGGCGTGGTGTTGGCGCTGCGCAGAGTGCCTCCCTG--
----GTGGGGTCATATGGGCAGTTGCTATCTTGGAAGAGCAGCGGCCAGCGGGTGCTCGATGGTCGCTGACAGGTGGGGC
TGCGAATGGGTGAAAACGCCTCTCATATCCTTTAC-AAAATACGCTTTCCCTGTGAGTGGGCGAACTATTTGTTTCCGTT
TTCCTGATCTATCTATAATGCTCTCGTGGAAGAGGCAAAACCCTACCGCCCACCCCGCGATTCCCGAAATTTACCAAAAT
GCCACTCTTCTCCTCCAAATTCGCGCCGCTGATCCCCCGCCTCCGCCGCCTCTCCACGGCGGCGGCGACCGCCGCCGGCG
AGGACCCGAAGCTGTCGCGCATCGCGGACGAGCTCCTGGCGCTCTCCTCGGCCGAGCTGGATGACTACTCGGCCCTCATG
CGCCTCAAGCTACGCCTCTCGCTCACCTCCAACCCAGCTGCCGGATTAGGTCCTGGCGCAGCCGGGGATGCGGCCTCCGG
GTCGGCGGGGGCCGAGGAGGCCGCGGCGGTGAAGACGGCGTTCGACGTCAAGATCGAGAAGTACGACGCGGCGGCCAAGA
TCAAGATCATCAAGGAGGTGCGCGCGATGACGGACCTGGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCGCCGGTC
GTGGTGCGCGCGGGGCTGCCCAAGGAGGAGGCCGAGGCTCTCGCCGCCAAGCTCAAGGCCGCCGGAGCTGCCGTTGCGCT
CGAGTGATCCAGAGCCGTAAGGTGTCCCCATTTTCGATTCCTACCGTTCCTAGATGATGCAAATCTTATGTGTGTGTTAA
TTTGTTTTGAATTGGAGTTTGTTGGGATTGGAGCAATTAGGTAGGGGTATAAGAAGATGCAGGGTTTGCTTGCATTGTTG
TAGCTTATGACTAGCCTCGAAGCATAATCACTGGTATATCTTCCTGGATCACGCAATAAGGTGTTGCTGTGTTGTGCGCT
ATCCTACTAGTCTGGATTAAACATTTCAATAGCTACATTGACTAGTGTGAAAGTGTACGAAGATGCCATTCTTGCTGGTT
ACTGTAGCTGGGATGCCATTCTTGTTGGCATTACTGTA------------------------------------------
----------------------TCTGGTGGTTAGAATATGCTAGTTTCTGTTATTTGTTGATGTGGAATGATGCCAACAT
GAGATGGCATCCATTCTATGTCAAAGTG-CATGAAACATTATCATGAGCACATTGGTGAGGACGAAGCGTAGATTCGTCT
GGATGGACAAGATGTGCTCACTTGCTTGAAATTGATGTTTGTGAAGGTGAAGTTCATATGCTTTGCATGGTTATTTACCC
ACGAAACTGAGATGTGTTGTTTCTTTAACGGATGGACTTTGATTGGGGATGGAGGTATGGGTAGCGAAGTTTGGTAGTAG
CGCACTTGAATCTAAGACATCTGATGCCATGGCCAGTATCTTAAATTTAGCAACTGTGAACAGTTTGGATAATCAGTCCA
AAGACCCATGACTTAC-----GGTTCTGCTGTGAAACAATAAAGCAAGAGATTGTAATCATGAAGATGATGTATAATTGA
TAAAGGTCTCGTTGACCACTTATTTTGATCATAAAATGTTTATCCCTTTATAGGTGTTTGCCACTTTATAGGTGTTGACG
CGTTGTAGAGTATCGGCATGTAAGAAGTTGTTCAAAATCGAATGCTAAGTCGTTAGCCGTTGTCTTATAA----------
-----------------------TGAATTAACCTGAAAGGCAAGGGATTTAGTAGTTAGAAATGGCTAACTGAAAATGTT
TCCGTAGAATGTAGATATATGAAGTTATCCTTCGTAAGAGTTTGGTTGTGTTTTTGTTCTGCTACAAGGCGAGTATTTGA
AGCATCTGCATCATTTTGGTGCAGGATGATACACTGTCAGCT---GAAGCTGATATGTGGACCAGATTTCATGGTTGTAT
TATCAGCCTATCAGGGAGCT--TACAAAACAAAATAGTTGGTACCTTCAAGCATCCACTAGT
>chr2B_53
----------------------------------------------------ATACCGAAACCACATAAT----TTATTC
CAGAGCATACCGAAGCCACAAGAAACACCCGAACAGAAAAACGACAATGGCCACCATAATCTCCTCTCACAAAGCAGACC
TACGACTAAACCCTTCATAAACCCCCCCTCAAATCCAGCGTGTTAATGCCTAACTATCTGCACAATGTCCAAATCGCACG
GGCGCATCAAAACCCTAGGAGGCGTGGACGGGCGTGATGAGCTCACCTAGCGACGGCCGCGCAGCGAGATCCCCAAACGG
TGCCGGCCCCAGAGCACCCTTCAGCGAGCCTCGAAATTCAGAAACCTGCAGGCATGCAGGCGCACCAGATCAAAACCCCA
AGCCACAAAACCCTACTGGAATTTCGCAAAGCACGCGACGGGACGGCGACTGCACGGACCGGCCGCCGCGGACCCGCGGA
GACCGCGCGCCCCCCGGAAGGAAACAACCCCCCAAA-AAAAGGGAGCGCCGAAAACCTCGCAAAAAAGCCCC--AAAAAA
ATCGCAGCAGAAAGGAGCGGGCGGGAGAATCTAA---ACTATGACTCCATGGGAGGAGGAGGAGGAGGAGGAGGAGGCGG
GAGTGCGGAATCGAGTTTCGCATGATCGGGACCCGTGATTCTACCCGACGGCCGCCGCGGCGTCGATTCCGACGAGGGTT
TTGCTTTCGCCCCGCCGCGCCGCGGCCAGAGAGA--AGAGAATGTCGTGGTGTTGGCGCTGC--AGAGTGCCTCCTTG--
----GTGGGGTCATATGGGCAGTTGCTATCCGGGAAGAGCAGCGGCCAGCTGGTGGTCGATGGTCGCTGACAGGTGGGGC
TGCGAATGGGTGAAAACGCCTCTCATATCCTTTAAAAAAATACGCTTTCCCTGTGAGTGGGCGAACTATTGGTTTCCGTT
TTCCTGATCTATCTATAATGCTCTCGTGGAAGAGGCAAAACCCTACCGCCCACCCCGCGATTCCCGAATTTTACGAAAAT
GCCACTCTTCTCCTCCAAATTCGCACCGCTGATCCACCGCCTCCGCCGCCTCTCCACGGCGGCGGCGACCGCCGGCGGCG
AGGACCCGAAGCTGTCGCGCATAGCGGACGAGCTCCTGGCGCTCTCCTCGGCCGAGCTGGATGACTACTCGGCCCTCATG
CGCCTCAAGCTACGCCTCTCGCTCACCTCCAACCCAGCTGCCGGATTAGGTCCTGGCGCGGCCGGGGACGCGGCCTCCGG
GTCGGCGGGGGCCGAGGAGGCCGCGGCGGTGAAGACGGCGTTCGACGTCAAGATCGAGAAGTACGACGCGGCGGCCAAGA
TCAAGATCATCAAGGAGGTGCGCGCGATGACGGACCTGGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCGCCGGTC
GTGGTGCGCGCGGGCCTGCCCAAGGAGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCCGCCGGAGCTGCCGTTGCGCT
CGAGTGATCCAGAGCCGTAAGGTGTCCCCATTTTCGATTCCTACCGTTCCTAGAGGATGCAACTCTTATGTGTGTGTTAA
TTTGTTTTGAATTGGAGTTTGTTGGGATTGGAGCAATTAGGTAGGGGTATAAGAAGATGCAGGGTTTGCTTGCATTGTTG
TAGCTTATGACTAGCCTCGAAGCATAATCACTGATATATCTTCCTGGATCACGCAATAAGGTGTTTCTGTGTTGTGCTTT
ATCCTACTGGTATGGATTGAACATTTCAATAGCTACATTGACTATGT---------------------------------
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>chr2A_53
----------------------------------------------------ATACCGAAACCACAGAATTTATTTACTC
CAGAGCATACCGAAACCCCAAAAAACACCCGAACCGAAAAACGACAATGGCCACTATAATTTCCTCTCACCGAACAGACC
TACGCCTAAACCCTTCATAAACCCCCC-TCAAATCCAGCGTGCTAATGCCTAACCATCTGAGCAATGTCCAAATCGCACG
GGCGCATCAAAACCCTAGGAGGCGTGGACGGGCGCG-TGAGCTCACCTCGCGACGGCCGCGCAGCGAGATCCCCAAACGG
TGCCGGCCGCAGATCGCCCTTCAGCGAGCCTCGAAATTCAGAAACCTGCAGGCATGCAGGCGCACCAGATCAAAAACCCA
AGCCACAAAACCCTACTGGAATTTTGCAGAGCACGCGACGGGACGGCGACTGCACGGACCGGCCGCCGCGGACCCGCGGA
GACCGCGCGCCCCCCGGAAGGAAACAACC---CAAA-AAAAAGGAGCGCCGAAAACCTCGCAAAAAAAGTCCC--AAAAA
ACCGCAGCAAAAGGGAGCGGGCGGGAGAATCTAGCAGACTACGACTCCATGGGAGGGGGAGGAGGAGGCGGGGCGA----
------GGAATCGAGTTTCGCGTGATCGGGACCCGTGATTCTACCC-------GCCGCGGCGCCGATT-CGACGAGGGCT
TTGCTTTTGCCCCGTCGCGCCGCGGCCAGCGAGGAGACGGAAGAGAATGGTGTTGGCGCTGC--AGAGTGTCTCCTTGCT
GTTGGTGGGGTCATATGGTCAGCTGCTATCCGGGAAGAGCAGCGGCCAGCGGATGCTCGATGGTCGCTGACAAGTGGGGT
TGCGAATGGGTGAAAACGCCTCTCACATCCTTTACAAAAATACGCTTTCGTTGTGAATGGACGAACTTTTCCTTTACGTT
TTCGTGATCTATCTATAATGCTCTCGTGGAAGAGGCAAAACCCTACCGCCCACCCCGCGATTCCCGAAATTTACCGAAAT
GCCACTCTTCTCCTCTAAATTCGCACCGCTGATCCCCCGCCTCCGCCGCCTCTCCACGGCGGCGGCGACCGCCGGCGGCG
AGGACCCGAAGCTGTCGCGCATCGCGGACGAGCTCCTGGCGCTCTCCTCGGCCGAGCTGGATGACTACTCGGCCCTCATG
CGCCTCAAGCTACGCCTCTCGCTCACCTCCAACCCAGCTGCCGGATTAGGTCCTGGCACGGCCGGGGACGCGGCCTCCGG
GTCGGCGGGGGCCGAGGAGGCCGCGGCGGTGAAGACGGCGTTCGACGTCAAGATCGAGAAGTACGACGCGGCGGCCAAGA
TCAAGATCATCAAGGAGGTGCGCGCGATGACGGACCTGGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCGCCGGTC
GTCGTGCGCGCGGGCCTGCCCAAGGAGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCCGCCGGAGCTGCCGTTGCGCT
CGAGTGATCCAGAGCCGTAAGGTGTCCCCATTTTCGATTCCTACCGTTCCTAGAGGATGCAACTCTTATGTGTGCGTTAA
TTTGTTTTGAATTGGAGTTTGTTGGGATTGGAGCAATTAGGTAGGGGTATAAGAAGATGTAGGGTTTGCTTGCATTGTTG
TAGCTTATGACTAGCCTCCAAGCATAATCACTGATATATCTTCCTGGATCACGCAATAAGGTGTTGGTGTGGTGTGCTCT
ATCCTACTGGTCTGGATTAAACATTTCAATAGCTACATTGGCTAGTGTGAAAGTATACAAAGATGCTGGCA-------TT
ACTGTAGCTGGGATGCCATTCTTGTTGGCATTACTGTAACTGGGATGTCATTCTTGTTGCCATTACCGTAGCTGGGATGC
CATTCTTGTTGGCATTACTGTATCTGGTGGTTAGAATATGCTAGTTTCAGTTATTTGTTGATCTGGAATGATGCCAATAT
GAGATGGCATCGATTCTATGTCG-AAGTACATGAAACATTATCATGAGCACATTGGTGAGGACGAAGCATAGATTCGTCT
GGATGGACAAGATGTGCTCACTTGCTTGAAATTGATGTTTGTGAAGGTGAAGTTCATATACTTTGCATGATTATTTTCCC
ATGAAACTGAGATGTGTTGTTTGTTTAACGGATGGGCTTTGATTGGAGATGGAGGTATGGGTAGCGAAGTTTTGTAGTAG
CGCACTTGAATCTAAGACATCTGATGCCATGGCCAGTATCTGAAATTTAGCATTTGTGAACTGTTTGAATAATCAGTCCA
AAGACCCATGGCTTATATGACGGTTCTACTGTGACACAATAAAGCAAGAGATTGTAATCATGAAGATGATATATAATTGA
TAAAGGTCTTGTTGACCACTTATTTTGATCTTGAAATGTTTATCCCTTTATATGTGTTTGCCACTTTATAGGTGTTGACG
CGCTATAGAGTATCGGCGTGGAAGAAGTTA---AAGATCGAATGCTAAGTCATTAGCCGTTGTCTTAT------------
-----------------------TGAATTAACCTGAAAGGCAAGGGATTTAGTAGTTAGTAATGGCTAACTGAAAATGTT
TCCCTAGAATGTAGATATATGAAGTTTTCCTTCGTAAGAGTTTGGTTGTGTTCTTATTCTGCTACAAGGCAAGTATTTGA
AGCATCTGCATCATTTTGGTGCAGGATGATACACTGTCAGGTCTAGAAGCTGGTATGCGGACCATATTTCATGGTGTATG
TATCAGCATATCAGGGAGCTTATACAAAGCAAAATAGTTGATACCTTCAAGCATTCACTAGT
>chr2B_1779
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---------------------------------------GACTAGTGTGAAAGTATACAAAGATGC--------------
----------------CATTCTTGTTGGCATTACTGTAGCTGA-------------------------TAGCTGGGATGC
CATTCTTGTTGACATTACTGTAGCTAGTGGTTAGAATATGCTAGTTTCAGTTATTTGTTGATCTGGAATGATGCCAATAT
GAGATGGCATCCAGTCTATGTCAAAAGTACATGAAACATTATCATGAGCACATTGGTGAGGATGAAGCGTAGATTCGTCT
GGATGGACAAGATGTGCTCAGTTGCTTGAAATTGATGTTTGTGAAGGTGAAGGTCATATACTTTGCATGATCAAC-----
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---------------------------------------------TTTAGCATTTGTGAACAGTTTGAATAATCAGTCCA
AAGACCCATGACTTATATGAGGGTTCTGCTGTGACACAATAAAGCAAGAGATTGTAATCATGAAGAT-ATGTATAATTGA
TAAAGGTCTCGTTGACCACTTATTTTGATCATAAAATGTTTATCCCTTTATA------------------GGTGTTGACG
CGTTGTAGAGTATCGGCATGTAAGAAGTTGTTCAGAGTTGAATGATAAGTCGTTAGCCGTTGTCTGATAATGATTTTTTT
TTTTTGCGGGAGTTGTCTGATAATGAATTAACCTGAAAGGGAAGAGATTTAGTAGTTAGAAATGGCTAACTGAAAATGTT
TCCGTAGAATGTAGATATATGAAGTTTTCCTTTGTAAGAGTTTGGTTGTGTTTTTGTTCTGCTACAAGGCGAGTATTTGA
AGCATCTGCATCATTTTGGTGCAGGATGATACACTATCAGCT---GAAGCTGATATGTGGACCAGATT----GGTTGTAT
TATCAGCCTATCGGGGAGCT--TACAAAACAAAATAGTTGGTACCTTCAAGCATCCACTAGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S----------------------
---------S-----------------------------------------------S----------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------S-----------------
-------------S------------------------------------------------------------------
---------------------------------------------------------------------------S----
------------------------------------S------------------------------------S------
----------------------------------------------------------------SS-SS-S---------
--------------S--------------------------------S--------------------------------
----------------------------------SS--------------------------SS-----------S----
------------------------------SS------------------------------------------------
----------------------------------------------------------------------S---------
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------------------------S-------------------------------------------------S-----
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-----------------------------------------------------------S--------S-----------
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--------------S-----------------------S-----------------------------------------
------------------------------------------------------S-------S-----------------
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---------------------------------S-------------------------------------------S--
--------S---------------------------------------------S---S-------SSSSSSSSSSSS--
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------------------------------------------------S-------------S--------------S--
-------------------------SSS----------------------------------------------------
-----------------------------------------------------------S---------S------S---
-S--------------------S------------S----------S-------------------------S-------
-----------------------------------------S----------SS-------------S------------
---------------S------------------S---------------------------------------------
----------------------------------------------------S---------------------------
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--------------------------S-----------------------------------------------------
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>forward_27
-------GCCATTCATGCACACAACCA-----------------------------------------------------
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>reverse_1833
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------------------------------------------------------------------------TGCTGGTT
ACTGTAGCTGGG--------------------------------------------------------------------
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