>input_sequence_70306
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------GCATAAAGAGGCACGCCACTCCGATCTCTCCAGACTCCACCTCCTAGGTCATG---ATGGCTCAGCGCAGCGCG
CTCCTCCTCCTCCTCTCCACCATCTTCGTCCTCCAGCTCCTCCTCCCGGGGACTAAAGCCGCAGCAGCGCCGACGACCAC
CTCGCCTCTCGACGACGA------------CGCGGCACAACGACAACCGTCCTTGCAGAGTCGCCGTGGTCGTCCCACGG
CCGCTAGGAGGCTGCTGCTGCAGCAGCAGCCAAGCAGCGCCACGGCCACCAACTCCTTCGACGTCAATGGCGCCCGTCAC
GCGGCCGCGGCGGCTAACGCGAAGCCGAGCGTGGAGTTCAACGCCGGCGTGAAGCCGCTGCCGCCTGTGGGGAGATCAAA
TGCAAATCCCCGGAATAATTAGTTGGTTCATCATCAGCTAGCACGCT----AGCAACCTCTTGGTTCCTTCTCTTAATTA
CCTAGCACTCAGGACAGGAGTAGTAGTTGGAGACTATTTT---------------------GTGTATAGATACTAACTAG
ATATGAGTTCTGCTGTTAAATGAAACTGTTTTGATGGATTTCCTTGCCTCCAATTTTGTTGATTTAACCT----------
----CTCTTATTCTAAATCAGCTCCACTTCTGCTAATTTCAACCCTCTTGGTCTTGGATAATCACTCGTTAGTCTGAATT
GACAGCACATCCAAACCGTCACTCAGAAAGAACCAACCCAAGGAGAAACAGCAAACTTGCACAAGAAACGACGTA-----
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>chr5D_1_TraesCS5D01G150800
ATGAAAGATCGGCCTTAGGGTATCCACCCTACATCAATACCACAGCTCAACACAGCATAACAGAGCACTAATTATGAACA
CATGGATGATCTTGTTCAACACTTGCACACTAGCATACCACCAATCCATTCATGACCACTAGCTACCAACACTTGCTCAC
ATGGAAACAACCCCTAGCATGCTCCAAATCCATTACAACTAGCTACTACAA-CATCACGGTCAAACAGATCGG-ACGATC
TAACCCTATCACATGAACAGATCTAGCTAGAACTAGTAGAGAGGAGGTGGTGATTGAA-TTACAAACGCCATCGGAACGG
GCACAGAGGAGGTGCCTGGCACGTCGGAGAGGAGGAGGAGATAACC--------------------CGCCGGAGTAGTTG
CGCCGCTTACCTCGTCGTCAAAGTGGATCTGTGCCGAGGGGAAAGCTCGAGAGGGAGGAAATGGTGGCGGGAGTTTTGCC
GCGACAGTCACCCTCGATATATAGGGCAACCGAATCGGCTGGCGGTGACTCGAATTCGTCCCGCCGCTTTTTCAGAGATG
CGCCATCGCTCCCGCCATCTCCCTTCCCTAC-----ACGG-----CGC-----GA-----CGTTTCCCTCCCCTGCATCG
CTCGAGCCTGGCTCGCTGGAAACAGCCGAATCGACCGTTCCTAGTGAGCCTGGCTGA-GGGTGCTTTGAGATTCGTGCGA
TGCGGGCCAAACAGTAAACACACGCATCCAAACAACTCATTTTTATCCCGCGCAGGCCTGACCCGACCTAGGTCACGGGT
CAACTTACATGTGGATCGTCCCCAAACCCATCCGAAGCTACCTACAGTAGCTAGTTTCCACGAGATTTTATTCGAGAAAC
GGGATTCAGATCTCGTGGCGACACGTTCCGACATGCTACTA-TGCCTGATGACTCCTCCATTCCA-TCCTCCACGGCCAA
GAAAAGAAAGGAAGAGGGTAGAAGCGCGTGCATGTTCTCTGCATGTTCCTTCCCGCCAAGTAGCTAGCGAGAGTGTGAGT
GCCAACGCATAAAGAGGCACGCCACTCCGATCTCTCCAGACTCCACCTCCTAGGTCATG---ATGGCTCAGCGCAGCGCG
CTCCTCCTCCTCCTCTCCACCATCTTCGTCCTCCAGCTCCTCCTCCCGGGGACTAAAGCCGCAGCAGCGCCGACGACCAC
CTCGCCTCTCGACGACGA------------CGCGGCACAACGACAACCGTCCTTGCAGAGTCGCCGTGGTCGTCCCACGG
CCGCTAGGAGGCTGCTGCTGCAGCAGCAGCCAAGCAGCGCCACGGCCACCAACTCCTTCGACGTCAATGGCGCCCGTCAC
GCGGCCGCGGCGGCTAACGCGAAGCCGAGCGTGGAGTTCAACGCCGGCGTGAAGCCGCTGCCGCCTGTGGGGAGATCAAA
TGCAAATCCCCGGAATAATTAGTTGGTTCATCATCAGCTAGCACGCT----AGCAACCTCTTGGTTCCTTCTCTTAATTA
CCTAGCACTCAGGACAGGAGTAGTAGTTGGAGACTATTTT---------------------GTGTATAGATACTAACTAG
ATATGAGTTCTGCTGTTAAATGAAACTGTTTTGATGGATTTCCTTGCCTCCAATTTTGTTGATTTAACCT----------
----CTCTTATTCTAAATCAGCTCCACTTCTGCTAATTTCAACCCTCTTGGTCTTGGATAATCACTCGTTAGTCTGAATT
GACAGCACATCCAAACCGTCACTCAGAAAGAACCAACCCAAGGAGAAACAGCAAACTTGCACAAGAAACGACGTAATAAA
CGAAACACTATATTTGAATCAATAAATAAATGTAAACAAATGTTAGTCTAAATGATTTAA-ATTAAACAAACAACATGAT
CTATGAGACTATAAGTCTATAACATGTGTTCCAAAGCCACTGGTAAGTTCTCAAGTTGAGGAGCCCAATGTTCA------
----CAGCTCTTCAAGCAGCAACATTTGTTTGCCTCAGGACTAATTAAGGAGCCACAGATCAACGAAGAAGAG-------
---TCTTAACCACTTCATATGATGAACCTCCTCATACCAAAACGGAAAAGTTACCAGTTATACATCACACAAACCACCGA
CCTATTCTACAAACCTTTCGGACTCATAAGCATTGATGATCCTGCTTGCCTGCAGACCTGCCAACTAACACTCTGGAATT
ATTGCTTAATATACAAAATTAGGCCGAAACTGACACCTTTTTAGCCTGACAGTTGCTATGTAATCATTGCCGCTGGACCG
ACGGTGATTGCTGCATCTGAACCGGAGGGAAGAACCCAATGCCTGGTGTTGGAAAGAAACCAGTTGATGTTGGAGATTGC
TGCGGTGCCTGCGGAGACTGCTGCTGCTGCTGCTGCTGCTGGGTCTGGCTCTGATTCTGGGCTGGTGAAAGAGGAGGTGG
AGGTGGCGGCCCACTTGGTCTTGGAAAACCTGGAGGTAGCATGTTCGGCAGTGGAGGTGGCATAGAGCTGGCCAGCATCC
CAAAAGGTCCCATTCCGAACATTCCTCCACCATTTTGACTGAATTGCTGCAGAAGTGGCGGCAGCATAGGTGGCAGTGGA
GGGGGAGGTGGTGCAAATGCGCCCGGTGCTTGATTTGCCTGCATCGATGACTGCATGCCTCCAAGAGAAGTAGGCGCTGC
TCCATTCTGCTGTGCCTGCA---GCAATTGCCCAAAGAAAGGGGGAGCACCCATATCACCGGTCTGCGTAGGATTCTCGA
TTCTAGGCCTCTTTGGTATCTGGAAGCCTGGAGGCCCTTCCGAGAGCTCTACGGAAGGC
>chr5D_37
------------------------------------ATACCACAGCTCAACACAGCATAACAGAGCACTAATCATGAACA
CATGGATGATCTTGTTCAACACTTGCACACTAGAATACTACCAATCCATCCATGACCACTAGCTACCAACACTTGCCCAC
ATGGAAACAACCCCTAGCATGCTCCAAATCCATCACAACTAGCTACTACAA-CATCACAGTCAAACAGATCGG-ACGACC
TAACCCTAGCACATTGACAAATCTAGCTATAACTAGTAGAGAGGACGTGGTGATTGAACTTACAGACGCCATCGAAACGA
CCGCGGAGGAGGTGCCTGACACGTCGGAGAGGAGGAGGAGTCGACCCGCCGCCGCAGTCAACCGGTCGCTGGAGCAGTTC
CGCCGCTTACCTCGTCGTCGAAGTGGATCCGCTCTGGAGGGAAAGCTTGAGAGGGGGGAAATGGTGACGGGAGTTTTGCC
ATGGCGGTCACCCTCGATATATAGGGTGACCGAATCAGCTGGCGGTGACTCGAATTCGTCCCGCCGCTTTTTTGGAAATG
CGCCATCGCTCCCGCCATCTCCCTCCCCTGC-----ACGG-----CGC-----GA-----CGTTCCCCTTCCCTGCATCG
CTCGAGCCTGGCTCGCTGGAAACGGCCGA---GGCCGTTCGTAGCGGGCCTGACTGAGGGGTGCTTTAAGGTTCGTGCTA
TGCAGGCCAAACAGTAAACACATACATCCAAGCAGCCCATTTTCATCCCGCGCGGGCCTGGCCCGATCTA----------
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>chr5D_37
------------------------------------ATACCACAACTCAACACAACATAACAAAGCAATAATGATGGACA
CATGGATGATCTTTTTCAACACTTGCACACTAGCATACCACCAATCCATCCATGACCACTAGCTACCAACACTTGCCCAC
ATGGAAACAACCCCTAGCAAGCTCCAAATTCATCACAACTAGCTACTACAA-CATCACAGTCAAATAGATCAGGAAGATC
TAACCCGACCACATGGACATATCTAGCTAGAACTAGTAGAGAGGAGGTGGTGATTGAACTTACAGACGCCATCGGAAGAG
-CGCGGAGGAGGTGCCTAGCACGTCGGAGAGGAGGAGGAGTCGACCCGCCGTCGCAGTCAACTGATCGCCGGAGTAGTTG
CGCCGCTTACCTCGTCGTCGAAGTGGATCCGCGCCGGAGGGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GTGGCGGTCACCCTTGATATATAGGGCGATCGAATCGGCGGGCGGTGACTCGAATTCGTCCCGCCGCTTTTTCGAAGATG
CGCCATCGCTCCCGCCATCTCCCTGCCCACAGCTGCGCGG-----CGC-----GGTCATA----CCCCTCCCCTGCATCG
CTCGAGCCTGGCTCGCTGGAAACAGCTGATTCGGCCGTTCCTAGCGGGCCAGGCTGAGGGATGCTTTGAGGTTCGTACTA
TGTGGGCCAAATAGTAAACACAATCATCCAAACATCCCATTTTCATCATGCGCGGCCCTGGCCCGACCTA----------
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>chr5D_37
------------------------------------ATACCACAGCTCAACACAACATAACAAAGCACTAATCATGGACA
CATGGATGATCTTATTCAACACTTGCACACCAGAATGCCACCAATCCATCCATGACCACTAGCTACCAACACTTGCCCAC
ATGGAAACAACCCCTAGCATGCTCCAAATCCATCACAACTAGCTACTACAA-CATCACAGTCAAACAGATCTA-ACGACC
TAACCCTAGCACATGGACAGATCTAGCTCGAACTAGTAGAGAGGAGGTGGTGATTGAACTTACAGACGCCATCAGGACAG
CCGCGGAGGAGGTGCCTGGCACATCGGAGAGGAGGAGGAGTCGACCCGTCTCCACAGTCCACCGGTCGCTGGAGTAGTTT
CCCCGC-TACCTCATCGTCGAAGTGGATCCGCGTCGGAGGGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GCGGCGGTCACCCTCAATATATAGGGCGACCGAATCAGTGGGCGGTGACTCGAATTCGTCTCGCTACTTTTTCGGAGATG
CGCCATCACTCCCGCCATCTCCCTCCCTTAC-----GCGG-----CGC-----GG-----CGTTCCCCTCTCCTACATCG
CTCGAGCCTATCTCACTGGAAATGACCGATTCGGCCATTCCTAGCGGGCCTGGTTGAGGGGTGCTTTGAGGTTCGTGCTA
TGCGGGCCAAACAGTAAACACAGGCATCCAAACAGCCCATTTTTATCCCGCGCGGGCCTGGCCCGACCTA----------
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>chr5A_37
------------------------------------ATACCATAGCTCAACACAGCATAATAGAGCACTAATCATGGAGA
CATGGATGATCTTGTTCAACACTTGCACACTAGCATAACACCAATCCATCCATGACCACTAGCTACCAACACTTGCCCAC
ATGAAAACAACCCCTAGCATGCTCCAAATCCATCACAACTAGCTACTACAA-CATCACAGTCCAACGGATCAG-ACGAAC
TAACCATACCACATGGACAGATCTAGCTAGAACTAGTAGAAAGGAGGTGGTGATTGAACTTACAAACGCCATTGGAACGG
CCTCGGAGGAGGTGCCTGGCACGTTGGAGAGGAGGACGAGTTGACTTGCTGCCACAGTCAACCAGTCGCCGGAGTAGTTG
TGCCTCTTACCTCATTGTCGAAGTGCATCCGCGTCGGAGGGAAAGCTCAAGAGG-AGGAAATGATGGCGGGAATATTGGC
GTGGCAGTCACCCTCAATATATCGGACGACCGAATCGGCATGCGGTGACTCGAATTCGTCCCGCTGCTTTTTCAGAGAAG
CACCATCGCTCCCTCCATCTCCCTCCCCTAC-----A-------------------------------------------
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>chr2D_37
------------------------------------ATACCACAACTCAACACAGCATAACAGAGCACTAATCATGGACA
CATGGATGATCTTGTTCAACACTTGCACACTACCATACCACTAATCCATCCATGACCACTAGCTACCAACACTTGCCCAC
ATGGAAACAACCCCTAACATGCTCCAAATCCATCACAGCTAGCCACTACAAACATTATAGTCAAACAGATCGG-AAGATC
TAACCCTACCACATGGATAGATCTAGCTAGAACTAGTAGAGAGGAGGTGGCGATTGAACTTACAGACGCCATCGGAAGAG
TCACGGAGGAGGTGCCTCGCACGTCAGAGAGGAGGAGGAGTCGATCCGCCGCCGCAGTCAACCGGTCGCCGGAGTAGCTG
TGCTGCTTACCTCATCATCGAAGCGGATCCACGCCTGAGGCAAAGCTCGAGAGGGCGGAAATGGTGGTGGGAGTTTTTCC
GCGGCGGTCACCCTCG--ATATAGGGCGACCGAATCGGCGGGCGATGACTCGAATTCGTCCGACCACTTTTTCAAAGATG
CGCCATTGCTCCCTG-----CCCGTAGCTGC-----GCGG-----CAC-----GA-----CATTCCCCTCCCCTGCATTG
CTCAAGCCTGGCTCGCTGGAAACGACTGATTCAGCCGTTCCTAGCAGGCCTAGCTGAGGGGTACTTTGAGGTTCGTGCTA
TGCGGGCCAAACAGTAAACACATGCCTCCAAACAGCCCATTTTCATACCGTGCAGGCCTGGCCCGACCTA----------
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>chr2A_37
------------------------------------ATACCACACATCAACATAGCATAACAGAGCACTAATCATGGAAA
CATGGATGATCTTGTTCAACACTTGCACACTAGCATACGACCAAACCATCCATGACCACTAGCTACCAACAGTTGTCCAC
ATGGAAACAACCCCAAGCATGCTCCAAATCCATCACAACTAGCTACTACAA-CATCTCAGTTAAATAGATCGG-ACGACC
TAACCCTACCACATGGACAGATCTAGCTAGAACTAGTAGAGAGGAGGTGGTGATTGAACTTACAAACGCCATCGAAATGG
CCGCGGAGGAGGCGCCTGGCACGTCGTAGAGGAGGAGGAGTCGACCCACCACAGCAGTCAACCGGTCGCTAGAGTAGTTG
TGCCGCTTACCTCATCGTCGAACTGGATCCACGCCGGAGGGAAAGCTCGAGAGGC-----------GCGGGAGTTTTGCT
ACGGCGGTCACCCTCCATATATAGGGAAATGGAATCGGCAGGCGGTGACTTGAATTTGTCCCGCCACTTTTGCAGAGATG
CGCCATCACTCCCTCCATCTGCCTTCCCTGC-----GCGG-----TGC-----GGTGCACCATTCCCCTCCCCTGCATCG
CTTGACCCTGGCTCGCTGGAAACGGCCGATTCGGCCGTTCCTAGCGGGCCTGACTGAGGGGTGCTTTGAGGTTCATGCTA
TGCGGGCCAAACAATAAATGCAGGAATCCAAACTGCCCATTTTCATCCCACGTGGGCTTGACCCGACCTA----------
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>chr2D_51
--------------------------------------------------CACAACATAACATAGCACTAACCATGGACA
CATGGATGATCTTGTTCAACACTTGCACACCAGCGTACCACCGATTTATCCATGACCACTAACTACCAACACTTGCCCAC
ATGGAAACAACCCATAGCATGCTCCAAATCCATCACAACTAGCTACTACAC-CATCACAGTCAAACAGATCGG-ACAACC
TAACCTTAGCACATGGACATATCTAGCTAGAACTAGAAGAGAGGAGGTCGTGATTGAACTTACAGAGGCCATCAGAACGG
CCGAGGAGAAGGTGCCTGGCACGTCGGAGAGGAGGAGGAGTCGCCCCG---GCGCAGTCAACCGGTCGCGGGAGTAGATG
CGCCGCTTACCTCGTCGTCGAAGTGGATCCGCGCCGGAGGGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GCGGCGGTGACCCTCGATATATAGGGCGACCGAATTGGCGGGTGGTGACTCAAATTCGTCCCGCCGCTTTTTCGGAGATG
CGCCATCGCTCATGCCATCTCCTTCCCCTGCCCGGTGCGG-----CGC-----GA-----CGTTCCCCTCCCCTGCATCG
CTCGAGCCTGGCTCGCTGGAAACGGCCGATTCGGCCGTTCCTAGCGTGGCAGGCTGAGGGGTGCTTTGAGGTTCGTGCTA
TGCGGGCCAAACAGTAAACACAGGCATCCAAACAACCCATTTTCATCCCGTGCGGGC-----------------------
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>chr3A_57
--------------------------------------------------------ATAACAGAGCACTAATCATGGACA
CATGGATGGTCTTGTTCAACACTTGCACACTAACATACCACCGATCCATCCATGACCACTAGCTACAAACACTTGCCCAC
ATGGAAACAACCCCTAGCACGCACCAAATCCATCACAACTAGCTACTACAA-CATCACAGTCAAACAGATCGG-ACGACC
TAACCCTAGCACATGGACATCTCTAGCTAGAACTAGTAGAGAGGAGGTGGTGATTGAACTTACAGACGCCATCAAAACGA
CCACGGAGGAGGTGCCTGGCACGTCGGAGAGGAGGAGGAGTCGACCTGCCGCCGTAGTCAACCGGTGGCCAGAGTAGTTG
CGCGGCTTACCTCGTCGTTGAAGTGGATCCGTGCCGGAGGGAAAGCTCGAGAGGGGGGAAATGATGGCAGGAGTTTTGTC
GCGACGGTCACCCTCGATATATAGGGCGACCGAATCGGCGGGCGGTGACTCAAATTCGTCCTGCCGCCTTTTCGGAGATG
CGCCATCGCTCCCGACATCTCCCTCCCGTAC-----GCGG-----CGCGGCGTGG-----CGTTCCCCTCCCCTGCATCG
CTCGAGCCTGGCTCATTGGAAACGGCCGATTCGGCCGTTCCTAGTGAGCCTGGCTGAGGGGTGCTTTGAGATTCGTGCTA
TGCAGGCCAAACTGTAAACACAGGCATCCAAACAGCCTATTTTCATCCCGCGCGGGCCTGACCCGACCTA----------
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>chr3A_59
----------------------------------------------------------AACAGAGCACTAATCATGGACA
CATGGATAATCTTGTTCAACACTTGCACACTAGCATACCACCGATTCATCGATGACCACTAACTACAAACACTTGCCCAC
ATGGAAACAACCCCTAGCATGCTCCAAATCCGTCACAACTAGCTACTACAC-CATCACAGTCAAACAGATCGG-ACGACC
TAACCTTAGCACATGGACAGATCTAGCTAGAACTAGAAGAGAGGAGGTGGTGGTTGAACTTACAGAGGCCATCGGAACGG
CCGCGGAGGAGGTGCCTGGCACGTCGGAGAGGAGGAGGAGTCGACCC-CCGGCGCAGTCAACCGGTCGCCGGAGTAGATG
CGCCGCTTACCTCGACGTCGAAGTGGATCCGCGCCGGAGAGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GCGGCGGTGACCCTCGATATATAGGGCGACCGAATT-GCGGGCGGTGACTTGAATTCGTCCCGCCGCTTTTTCGGAGATG
CGCCATCGCTCCCGCCATCTCCCTCCCCTAC-----GCGA-----CGC-----GG-----CGTTCACCTTCCCTGCATCG
CTCGAGCCTGGCTCATTGGAAACGGCCGAATCGGACGTTCCTAGCGGGCCAGGCTGAGGGGTGCTTTGAGGTTCGTGCTA
TGCGGACCAAACAGTAAAGACATGCATCAAAACATCTCATTTTCATCCTGCGTGGGCCTG--------------------
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>chr3D_59
----------------------------------------------------------AACAGAGCACTAGTCATGGACA
CATGGATAATCTTGTTCAACACTTGCACACTAGCATACCACCGATTCATCGATGACCACTAACTACAAACACTTGCCCAC
ATGGAAACAACCCCTAGCATGCTCCAGATCCATCACAACTAGCTACTACAC-CATCACAGTCAAACAGATCGG-ACGGCC
TAACCTTAGCACATGGACAGATCTAGCTAGAACTAGAAGAGAGGAGGTGGTGATTGAACTTACAGAGGCCATCGGAACGG
CCGCGGAGGAGGTGCCTGGCACGTCGGAGAGGAAGAGGAGTCGACCCGCCGGTGCAGTCAACCGGTCGCCGGAGTAGATG
CGTCGCTTACCTCGTCATCGAAGTGGATCCGCGCCGGAGGGAAAGCTCGAGAGGGGG-AAATGGTGGCGGGAGTTTTGCC
GTGGTGGTGACCCTCGATATATAGGGCTACCGAATCGGCGGGCGGTGACTTGAATTCGTCCTGCCGCTTTTCCGGAGATG
CGCCATCGCTCCCGCCATCTCCCTCCCCTGC-----GCGG-----CGC-----GA-----TGTTCCCCTTCCCTGCATGG
CTCGAGCCTGGCTCGTTGGAAACGGCCGAATCGGCCGTTCCTAGCGGGCCAGGCTGAAGGGTACTTTATGGTTCGTGCTA
TGCGGGCTAAACAGTAAACACAGGCATCCAAACAGCCCATTTTTATCCCGTGCGGGCCTG--------------------
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>chr3D_59
----------------------------------------------------------AACAGAGCACTAATCATGGACA
TATGGATGATCTTGTTCAACACTTGCATACTATCATACCACCGATTCATCCATTACCACTAACTACCAACACTTGCCCAC
ATGGAAATAACCCCTAGAATGCTCCAAATCCATCACAA----------------------TCAAACAAATCAG-ACGACC
TAACCTTAGCACATGGACTGGTATAGCTAGAACTAGAAGAGAGGAGGTGGTGATTGAACTTACAGAGGCCATCGTAACGA
CCGCGGAGGAGGTGCCTGGCACGTCGAAGAGGAGGAGGAGTCGACCTGCCGCCACAGTCAGCCGGTCGCCGGAGTAGATG
CGCCGCTTGCCTCGTCCTCGAAGTGGATCCGCGCCGGAGGGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GCGGCGGTGACCCTCGATATATAGGGCGGCCGAATTGGCGGGAGGTTACTCGAATTTGTCCCGCCACTTTTTCGGAGATG
CGCCATCGCTCCCACCATCTCCCTCCCCTGC-----GCGG-----CGTGGCACAG-----CGTTCCCCTCCCCTGCATCG
CTCGAGCCTGGCTCACTGGAAACGGCCAATTCGGCCGTCCCTAGCGGGCCTGGCTGAGGGCTACTTTGAGGTTCGTGCTA
TGCGGGCCAAACAGTAAACACATGCATCCAAACAGCCCATTTTCATCCCGCGTGGGCCTGGCCCGACCTA----------
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>chrUn_59
----------------------------------------------------------AACAGAGCACTAATCATGGACG
CATAGATGATCTTGTTCAACACTTGCACACTAGCATACCACCGATTCATCCATGACCACTAACTACCAACACTTGCCCAC
ATGGAAACAACCCCTAGCATGCTCCAAATCTATCACAACTAGCTACTACAC-CATCATAGTCAAACGGATCGG-GCGACC
TAACCTTAGCACACGGACAGATCTAGCTAGAACTAGAAAAGAGGAGGTGGTGATTGAACTTACAGAGGCCATCGGAATGG
CCGCGGAGGAGGTGCCTGGCACGTCGGAGAGGAGGAGGAGTCGGCCCGCCGCCACAGTCAACCGGTCGCCGGAGTAGATG
CGCCGCTTACCTCGTCGTCGAAGTGGATCCGCACCGGAGGGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GCGGCGGTGACCCTCGATATATAGGGCGACCGAATCGGCGGGCGGTGACTCGAATTAGTCCCGCCGCCTTTTCAGAGATG
CGCCATCGCTCCCGCCATCTCTCTCCCCTGC-----GCGGCGCGGCGA-----GG-----CATTCTCCTCCCCTGCATCG
CTCGAGCCTGGCTCACTAGAAACGGCCGATTCGGCCGTTCCTAGCGGGCCGGGCTGAGGGGTCCTTTGAGGTTCGTGCTA
TGCGGGCCAAACAGTAAACATAGACATCCAAACATCCCATTTTCATCCCGCGCGGGCCTG--------------------
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>chr4D_59
----------------------------------------------------------AACAGAGCACTAATCATGGACA
TATGGATGATCTTGTTCAACACTTGCACACTAGCATACCACCGATTCATCCATGACCACTAACTACCAACACTTGCCCAC
ATGGAAACAACCCCTAGCATGCTCCAAATCCATCACAACTAGCTACTACAC-CATCACAGTCAAACAGATCGG-ACGACC
TAACCTTAGCACATGGACAGATCTAGCTAGAACTAGAAGAGATGAGGTGGTGATTGAACTTACAGAGGCCATCGGAATGG
CCGCCGAGGAGGTGCCTGGCACGTCGGAGAGGAGGAGGAGTCGACCCGCCGGTGCAGTCAACTGGTCGCCGGAGTAGATG
CGCCGCTTACCTCGTCGTCGAAGTGGATCTGCGCTGAAGGGAAAGCTCGAGAGGGGGGAAATGGTGGCGGGAGTTTTGCC
GCGGCGGTGACCCTCGATATATAGGCCGACCGAATCGGCGAGTGGTGACTCGAATTCGTCCCGCCGCTTTTTCGAAGATG
CGCCATCACTCCCGCCATCTTCGTCCCCTGT---------------GC-----GG-----CGTTCCCCTCCCCTGCATCG
CTCGAGCCTGGCTCGCTGGAAAC---CGATTTGGCCGTTCCTAGCAGGCCAGGCTGAGGGGTGCTTTGAGGTTCGTACTG
TGGGGGCCAAACAGTAAACATAGGCATCCAAACAGTCCATTTTCATCTCGCGCGGGCCTG--------------------
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>chr5B_747
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----------------------------------------------------------------------GGTCACGGGT
-AACTTACATTTGGATCGTCCCCAAACCCATCCGAAGCTACCTACAGTAGCTAGTTTCCACGAGATTTTATTCGAGAAAC
GGGATTCAGATCTCGTGGCGACACGTTCCTATATGCTATGCCTGCCTCATGACTCCTCCATCCCA-TCATCCACGGCCAA
GAAAAGAAACGAAGAAGGGAGAAGCGCGTGCATGTTCTCTGCATGTTCCTTCCCGCCAAGTAGCTAGCGAGAGTGTGAGC
ACCAACGCATAAAGAGGCACGCCACTCCGATCTCTCCAGACTCCACCTCCTAGGTCATGATGATGGCTCAGCGCAGAGTG
CTCCTCCTCCTTCTCTCCACCATCTTCGTCCTCCAGCTCCTCCTCCCGGGGTCTAAAGCCGCAGCAGCGCCGACGACCAC
CTCGCCTCTCGACAACGACGGCGGCACTGCCGCTGCACAGCGACAAGCGTCCTCGCAGAGTCGCCGCCGTCGACCCACGG
CCGCTAGGAGGCTGCTGCTGCAGCAGCAGCCAGGCGGCGCCACGGCCACAATCTCCTTCGACGTCAATGGCGCCCGTCAC
GCGGCCGCGGCGGCTAACGCGAAGCCGAGCGTGGAGTTCAACGCCGGCGTGAAGCCGCTGCCGCCTGTGGGGAGATCAAA
TGCAAATCCCAGGAATAATTAGTTGGTTGGTCATCAGCTAGCTAGCAGGCGAGCAGCCTCTTGGTTCCCTCTCTTAATTA
CCTAGCACTC---ACAGGAGTAGTAGTTGGAGACTATTTTTTGTGTATAGACTATTTTTTTTTGTATAGATACTAACTAG
ATATGAGTTCTGCTGTTCAATGAAACTGTTTTGATGGATTTCCTTGCCTCCAATTTTGTTGATTTAACCTCTCTTGAATT
ACCACTCTTATTCTAAACCAGCTCCACTTCTGCTAATTTCAACCCTCTTGGTCCTGGATCATCACTCGTTACTCTGAATT
GACAGCACATCCCAACTGTCACTCAGAAAGAACCAACCCAATGAAAAACAGCAAACTTGCAAAAGAAACAACATATTAAA
CGAAACACTATATTTAAATCAATAAATAAATGTAAACAAATGTTAGTCTAAATGATTTAAAATTAAACAAA--ACATGAT
CTATGAGACTATAAGTCTATAACATGTGTTCCAAAGCCACTGGTAAGTTCTCACGTTGAGGAGCCCAATGTTCCACTGTT
TGGGCAACTCTTCAAGCAGCAGCATTTGTTTGCCTCAGAACCAATTAAGGAGCTACAGATCAACG---AAGAG-------
---TCTTAACCACTTCATATGATGAACCTCCTCATACCAAAACGGAAAAGTTACCAGTTATACATCACACAAACCACCCA
CCTATTCTACAAACCTTTCGGACTCATAAGCATTGATGATCCTGCTTGCCTGCAGACCTGCCAACTAACACTCTGGAATT
ATTGCTTAATATACA--------------------CCTTTTAAGCCCGACAGTTGCTATGTAATCATTGCCGCTGGACCG
ACGGTGATTGCTGCATCTGAACCGGAGGGAAGAACCCAATGCCTGGTGTTGGAAAGAAGCCAGTTGATGTTGGAGATTGC
TGCGGTGCCTGTGGAGACT---------GCTGCTGCTGCTGGGTCTGGCTCTGATTCTGGGCTGGTGAAAGAGGAGGTGG
AGGTGGCGGTCCACTTGGCCTTGGATAACCTGGAGGTAGCATGTTCGGCAGTGGAGGTGGCATAGAGCTGGCCAACATCC
CAAAAGGTCCCATTCCGAACATTCCTCCACCATTTTGACTGAATTGCTGCAGAAGTGGCGGCAGCATAGGTGGCAGTGGA
GGGGGAGGTGGTGGAAATGCGCCCGGTGCTTGATTTGCCTGCATCGATGACTGCATGCCTCCAAGAGAAGTAGGCGCTGC
TCCATTCTGCTGGGCAGCCTGTGGCAGTTGCCCAAAGAAAAGGGGAGCACCCATATCACCGGTTTGAGTAGGATTCTCAA
TTCTAGGCCTCTTTGGTATCTGGAAGCCTGGAGGCCCTTCCGAGAGCTCTACGGAAGGC
>chr5A_825
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--------------------------------------------------------------------TATTCGAGAAAC
GGGATTCAGATCTCGTGGCGACACGTTCCGATATGCTATGCCTGCCTGATGACTCCTCCATCCCAATCATCCACGGCCAA
GAAAAGAAACGAAGAGGGGGGAAGCGCGTGCATGTTCTCTGCATGTTCCTTCCCGCCAAGTAGCTAGCGAGAGTGTGAGT
GCCAACGCATAAAGAGGCACGCCACTCCGATCTCTCCAGACTCCACCTCCTAGTC----ATGATGGCTCGGCGCAGCGCG
CTCCTCCTC---CTCTCCACCATCTTCGTCCTCCAGCTCCTCCTCCCGGGGACTAAGGCCGCAGCACCGCCGACGACCGC
CTCGCCTCTCGACAACGACGGCCGCACTGCCGCGGCACAACGACAACCATCCTCCCAGAGTCGCCGTCGTCGTCCCACGG
CCGCTAGGAGGCTGCTGCTGCAGCAGCAGCCAAGCAGCGCCACGGCCACCAACTCCTTCGACGTCAATGGCGCCCGTCAC
ACGGCCGCGGCGGCTAACGCGAAGCCGAGCGTGGAGTTCAACGCCGGCGCGAAGCCGCTGCCGCCTGTGGGGAGATCAAA
TGCAAATCCCAGGAATAATTAGTTGGTTGATCATCAGCTAGCTAGCAGGCGAGCAGCCTCTTGGTTCCCTCTCTTAATTA
CCTAGCACTC---ACAGGAGTAGTAGTTGGAGACAATTTTTTGTCTATAGACTA-TTTTTTGTGTATAGATACTAACTAG
ATATGAGTTCTGCAGTT-AATGAAACTGCTTTGATGGATTTCCTTGTCTCCAATTTTGTTGATTTAACCTCCCTTGAATT
ACCACTCTTATTCTAAATCAGCTTCACTTTTTGCCAATTTGAATTACTCTGA------------------AGTCTGAATT
GACAGCACATCCAGACCCTCACTCAGAAAGAACCGACCCAAGGAAAAACAGCAAACTTGCACAAGAAACAACATAATAAA
CGAAACACTATATTTGAATAAATAAATAAATGTAAATAAATGTTAGTCTAAATGATTTAA-ATTAAACAAACAACATGAT
CTATGAGACTATAGGTCTATAACATGTGTTCCAAAGCCACTGGTAAGTTCTCAAGTTGAGGAGCCCAATGTTCA------
----CAGCTCTTCAAGCAGCAACATTTGTTTGACTCAGGACTAATTAAGGAGCCACAGATCAACGAAGAAGAGTCTTAAC
CACTCTTAACCACTTCATATGATGAACCTCCTCA-ACCAAAACGGAAAAGTTACCGGTTATACATCACACAAACCACCGA
CCTATTCTACAAACCTTTCCGACTCATAAGCATTGATGATCCTGCTTGCCTGCAGACCTGCCAACTAACACTCTGGAATT
ATTGCTTAATATACAAAATTAGGCCCAAACTGACACCTTTTTAGCCTGACAGTTGCTATGTAATCATTGCCGCTGGACCG
ACGGTGATTGCTGCATCTGAACCGGAGGGAAGAAACCAATGCCTGGTGTTGGAAAGAAACCAGTTGATGTTGGGGATTGC
TGCGGTGCCTGTGGAGATT---------GCTGCTGCTGCTGGGTCTGACTCTGATTCTGGGCTGGTGAAAGAGGAGGTGG
AGGTGGCGGCCCACTTGGTCTTGGAAAACCTGGAGGTAGCATGTTCGGCAGTGGAGGTGGCATAGAGCTGGCCAGCATCC
CAAAAGGTCCCATTCCGAACATTCCTCCACCATTTTGACTGAATTGCTGCAGAAGTGGCGGCAGCATAGGTGGCAGTGGA
GGGGGAAGTGGTGCAAATGCGCCCAGTGCTTGATTTGCCTGCATCGATGACTGCATGCCTCCAAGAGAAGTAGGCGCTGC
TCCATTCTGCTGTGCCTGCA---GCAATTGCCCAAAGAAAGGGGGAGCACCCATATCACCGGTTTGCGTAGGATTCTCGA
TTCTAGGCCTCTTTGGTATCTGGAAGCCTGGAGGCCCTTCCGAGAGCTCTACGGAAGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S-------
-------------------------------------------------S--------------------------S---
---------------------------------S------------------------S---------------------
--------S------S----------------------------------------------------------------
S---S-----------------------------------S-S-------------------------------------
-------------------S-----------------S------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
---------------------------------S--------------------------------------------S-
----------------------S---------------------------------------------------------
S---------S---------------------------------------------------------------------
-------------------------------S------SSS--------------------S------S-----------
---------S--------S-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
-------------S---------------------------------------S-------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------------S-------------SS--S--------S------------S-----------
----------SSS-------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------------S-----S--------------------
--------------------------------------------S------------------------S--S-------
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-------------------------S------------------------------------------------------
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-----------S-------SSSSSSSSS----------------------------------------------------
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---------------------------------------------------------------S----------------
-----------------------------------------------------------
>forward_719
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-----------------------------------------------------------GGTGCTTTGAGATTCGTGCG-
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>reverse_2412
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-----------CGGAGACTGCTGCTGCTG---------------------------------------------------
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