>input_sequence_70297
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------------------------------------------------------------------------ATGGCGTC
CCTCGCGTTGATGCCGAGCTGGTTCCGCCGCCGCGCGCACGTCCCGTCCCCGGAGGAAGCGCGCGAGATCGAGAGGAGGA
AGAGAAAGGAAGAGTACGATCAGCTGATCGCTTCGCTGAGGCCGCGACCACGCACATGGCGGAGTCGTCGGAGGGATCGC
CGGGAAGCGCTGGCTAACGAGGCCGCAAAGCGGGAGTGGGTCGATGAGCAGAAACGGCTGATCGCGGAGGCGAAGCAGCG
ATCAGGCGGCGTCCCACATCCCTGTTGGAACGATGACGCGCGAG------ACAGACACAGACGCAGGATGCGGGCGGCAG
TGGAGGAACTATCGGCGGCTTACGAGGCCAAGAAGAGCCAATGGATGGCCGCGCATAAGCGATCGGGGCTCGAGGAAGAT
CGGCGGGGCAGCACCGCCGTGAAGGTTCACCCCCTCGTGTCCACGGAGGCGCCTTTGAAGCCCGTAACCGCCGCCGGGAA
GAGCAGCGCGGCAGGGGGCAGCGAGTCCGGCCACCGGGTGGAGATGCACGAGGCGAAGGCCATCGAGCAGAAGCACCTGT
GGGGAGGCCGCCGCCGCAGCGATGAGTACTATGCCATGCGCCGGGAGGTACTGAGGAGAGACCGTGCCGCTCTCGACGAG
ATTACGGAGCCGCAATCTGCATGCGCAACGAGGAAGAAG---GAAGAAGATCGTATCTGTCCGTTCTGTTCTCGGCTTCT
CGCAGACAGGAGATAG----------------------------------------------------------------
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>chr4D_1_TraesCS4D01G202100
ATAGTGAGGTTGTGGGAATTGTCTTTCCTGCTATTTCTCCAACTCTCCTTTGACATGTGCATGAGGTTGTGTTGGTTCTC
A-GTGAAGCACCCTGTAATTCTAAAGTAAACTCAAGGTCGATCCAACGCTGGTGCAAGCCATGGCTGCCAATGGAGGCCC
TACCCTGCATTACCATTAGCACATACCTTGAAGGCCAAAAA-GAAAGGTGTCCACCGGCTGGGCACTTGGCCGACGCGGC
ATCCACTGCATGC--------------AGAGCATCCTTCCAGGAGAGACTCCATCGACCGGTCTGATTCCGCCCACAAAC
ATAGGCCACCAAGGACAGCGGTAAGGACAGCAGGGTGG----GGCGGAGGAGTGGAGGCAGTGGGCAGCGCCGGCAGAGG
CGTGGCAGAGGTGCCGCGGACTGAGGACGGACTACACGCAGTGGTCTGTTGTCGATTGGGCTTTCTTCCATGTTTGCGAA
TTGACACCTTCGATGGTAATTTAAGACTCGAAACAGAGCGACGACATGCAAGTCTAGATGCCTAATAGAAATTAGTT-AA
ATGAAAAAATAATTGATGATGTGGTTAGGTTGCATGTCAAGAAAAATAAGATAGTGT-GATGAACTATTTAGGTATTATA
GATATAGATTATAGTTGTGAGGTATTCGAATGCAGAGCAGACGTGTCCGGGCACATCGCGGGCGTTTTAGGGCGTGGATT
TGGTGTTTGCGGCTGTCGTGCATGTTATCCAACACGATCGATACAGTAGGAAATAGTAACATGCAGGGATCTGACTGCGG
ATCCGTGCAAAATTCGTTCTGGGCGTCCGATTCCGAAATGTCCAGCGAGACGTACTTATACAGTACTAAGCGTTGGACCA
ACGCACTACTAACTGTTCCTGGCTCGGACACGGCTTGAACGCTCGATCGCAAGACGGCTTGCCATATCAGGTGTC---CA
CCATATAAGGCGAGCGTATCCAGGGGAAAGAAAGAGCGTATCACCCGATCGAGTCTGCACTG-------GCAATGGCGTC
CCTCGCGTTGATGCCGAGCTGGTTCCGCCGCCGCGCGCACGTCCCGTCCCCGGAGGAAGCGCGCGAGATCGAGAGGAGGA
AGAGAAAGGAAGAGTACGATCAGCTGATCGCTTCGCTGAGGCCGCGACCACGCACATGGCGGAGTCGTCGGAGGGATCGC
CGGGAAGCGCTGGCTAACGAGGCCGCAAAGCGGGAGTGGGTCGATGAGCAGAAACGGCTGATCGCGGAGGCGAAGCAGCG
ATCAGGCGGCGTCCCACATCCCTGTTGGAACGATGACGCGCGAG------ACAGACACAGACGCAGGATGCGGGCGGCAG
TGGAGGAACTATCGGCGGCTTACGAGGCCAAGAAGAGCCAATGGATGGCCGCGCATAAGCGATCGGGGCTCGAGGAAGAT
CGGCGGGGCAGCACCGCCGTGAAGGTTCACCCCCTCGTGTCCACGGAGGCGCCTTTGAAGCCCGTAACCGCCGCCGGGAA
GAGCAGCGCGGCAGGGGGCAGCGAGTCCGGCCACCGGGTGGAGATGCACGAGGCGAAGGCCATCGAGCAGAAGCACCTGT
GGGGAGGCCGCCGCCGCAGCGATGAGTACTATGCCATGCGCCGGGAGGTACTGAGGAGAGACCGTGCCGCTCTCGACGAG
ATTACGGAGCCGCAATCTGCATGCGCAACGAGGAAGAAG---GAAGAAGATCGTATCTGTCCGTTCTGTTCTCGGCTTCT
CGCAGACAGGAGATAGATAGAACGACCGACCATGTTCGGTTCGCAGCTTTGTCCTGCGG-CGTAGTCAGAGGTTTCGTGT
GCCAAGGGAATCAATTTT-TTTTAGTTCATCCTATCCTACGAAACTTTTGTGCATGGTAATC-TTAGCTTTGTC-TGGAT
ATTTTTCACCCTTTGTCCTCGATCGTGCGCGTGGATATTTTCACAAATCAACTTTTTATTAGGTCAACTAGAACAATGCC
CGTGCGTTGCAACAAGATATAAATATTCTACTACATTAAATAAATGTTTATCAAATACGACCATGAATTATCTTATATTT
TGATCAGAAGTTTGATAAGTAAATTAAAGTGAAATTTGTTCATAAGGCAAGTAAATTAAGGTAATCCATTAGGACGCCGA
TAACTGCCATACGTGTGGTGTATCGGGTGGTTGTGCCGCACGCCCTGTGTGGCACGGAGACGATCCCGCCCGCACGACTG
TGTCCGGGCGCGCGCAGCCACAGACCGCACGTCCGGTGCAGCGCGATCGCCCCGCACGAACACGTACGGGCGAGTGAGCA
CGTGGCCCGCACGACTCGTCTCGGTCGTCGCCCCTTCCCGCCTGCGACCCACACGCCCCGCGTGTCAGTAACCACGCGTC
CTGTCGCGATTGCCATGGTCCGGACCCTCTTTAGTTGCCATGTTGCTGAACTACAGTTGCCATGTTGCTAAACTACAGTT
GCCATGTCGGACAACTACAGTTGCCATCTT--------------------------------------------------
-------------------------------------------------------------------------------C
TAACACTGGACAGTTGCCATGTAGCACTAAAAAAACATGGC-AAAAACATGTTTCGGGTAAAAAAGAGAGTTGCCATCTG
CTTACAAGCACGCTAGAGGCAGTTGCCATGTACCCTGCAAAA-ACACATGGCAATTGATAGCTTTTGATGTGTGGGAGAG
GAGGCGGGCATGTGGGCGATGGTGGTATCTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGTAGAGCTACAA
ACAGACGTGGCAACAATAACATCTTCGGGTG
>chr6A_1
ATAGTGAGGTTGTGGGAATTGCCTTTCCTGCTATTTCTCCAACTCTCCTTTGACATATGCATGAGGTTGTGTTGGTTCTC
GGGTGAAGCACCCTGTAATTCTAAAGGAAACTCGAGGTCGATCCAACGCTGGTGCGAGCCATGGCTGCCAATGGAGGCCC
TACCCTGCATTACCATCAGCACATACCTTGAAGGCCGAAAA-GAAAGGTGTCCACCAGCTGGGCACTTGGCCGACGCGGC
ATCCACTCCATGGTTGAGTCGTCGGGTAGAGCATCCTTCCAGGAGAGACTCTATCGGCCGGTCTGATTCCGCCCACAAAC
ATAGGCCACCAAGAACATCGGTAAGGACAGCGGGGTGGGGGCGAAGGAGGAGTGGAGGCAGTGGGCAGCACCGGCAGAGG
CAGAGGAGAGGTGCCGCGGACCGGAGACGGACTACACGCAAAGATCTGTTGCTGAT--GGCTTTCTTCCCTGTTTGCGAA
TTGACAACTTCGATGGTAATTTAGGACTCGAAACAGAGCGGCGACATGCAAGTCTAGATGCCTAATAGAAATTAGTT-AA
ATGAAAAAATAATGGATGATGTGGTTAGGTTG------------------------------------------------
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>chr4B_2
-TAGTGAGGTAGTGGGAATTGCCTTTCCTGCTATTTCTCCAACTCTCCTTTGACATGTGCATGAGCTTGTGTTGGTTCTC
ATGT-AAGCACCCTGTAATTCTAAAGAAAACTCGAGGTCGATCCAACGATGCTGCAAGCCATGGATGCCAATGGAGGCCC
TACCCTACATTACCATCAGCACATAACTTGAAGGCCGAAAAAGAAAGGTGTCCACCGGCTGGTCACTTGGCCGACGCGGC
ATCCACTCCATGGTTGAGTCGTCGGGCAAAGCATCCTTCCAGGAGAGACTCCATCGGCCGGTCTGATTCCACCCACAAAC
ATAGGCCACCAAGGACAACGGTAAGGACAGCGGGATGGTGACGGAGGAGGAGGGGAGGCAGCGGGCAGCGCTGGCAGAGG
CGGAGGAGAGGTGCCGCGGAAAGGATGGTGGGGCAGGATGAC--------------TGGGCTTTCTTCCCTGTTTGCGAA
TTGACACCTTCGCTGGTAATTTAAGACTCAAAATAGAGCGACCACATGCAAGTCTAGATGT-TAATAGAAATTAGCTAAA
ATGAAAAAAAAATTGATAATGTGGTTAGGTTGCATGTCAAGAGAAATAAGATAGTGAGGATAAGCTATTTAGTTATTATA
GATTATATATA------TGAGGTATTCGAATGCAGAGCGGACGTGTCCGGGCACATCACGGACATTTTAGGGCCTGGATT
TGGTGTTTGCGGCTGTCGTGC--------CAACACCATCGATAGAGTAGGAGATAGTAACATACATGGA-----------
-------------------------TCTGACTCCGAAATGTCGAGCGAGACGTAGG-----AGTACTAAGCGTTGGATCA
ACGCACTACT----GTCCCTGGTTCGGACACGGCTTGAACGCTCGATCGCAAGACGGCTTGCCATATCAGGTGTCCACCA
CCATATAAGGCGAGCGTATCCAGG----AGAAAGAGCGTATCGCCCGATCGAGTCTGCACTG-------GCAATGGCGTC
CCTCGCGTTGGTGCCGAGCTGGTTCCGCCGCCGCGCGCACGTCCCGTCCCCGGAGGAAGCGCGCGAGATCGCGAGGAGAA
AGAGAAAGGAAGAGTACGATCAGCTGATCGCTTCGCTAAGGCCGCGACCAAGCACATGGCGGAGTCGTCGGAGGGAACGC
CGGGAAGCGCTGGCTAACGAGGCCGCAAAGCGGGAGTGGATCGACGAGCAGAAACGGCTGATCGCGGAGGCGAAGCAGCG
ATCAGGCGGCGTCCCACATCCCTGTTGGAACGACGACGCGCGAG------A------CAGACGCAGGATGCGGGCGGCGG
TGGAGGAACTGTCGGCGGCTTTCGAGGCCAAGAAGAGCCAATGGATGGCTGCGCATAAGCGTTCGGGGCTTGAGGAAGCT
CGGCGGAGCAGCACCGCCGTGAAGGTTCGCCCCCTCGTGTCCACGGAGGCGCCTCTGAAGCCCGTAACCGCCGCCGGGAA
GAGCAGCGCGGCAGGGGGCAGCGAGTCCGGCCGCCGTGTGGAGATGCACGAGGCGAAGGCCATGGAGCAGAACCACCTGT
GGGG---CCGCCGCCGAAGCGATGAGTACTACGCCATGCGCCGGGAGGTACTGAGGAGAGACCGTGCCGCTCTTGACGAG
ATTACGGAGCCGCAATCTGCATGCGCGACGAGGA---AG---GGAGAAGATCGTATCTGTCCGTTCTGTTCTCGGCTTCT
CGCAGACAGGAGATAGATAGAACGACCGACCATGTTCAGTTCGCGGCTTTGTCCTGCGG-TGTAATCAGAGGTTTCGTGC
ACCAGGGGAATCAATTTTTTTTTAGTTCATCCTATCCTACTAAACTTTTGTGCATGGT--TC-TTAGCTTTGTCTTGGAT
ATTTTTCACCCTT-GTCCTCGATCGTCCGCATGGGAATTTTCACAAATCAACTTTTTTTTAAGGCAA-------------
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>chr3B_741
ACAGAAGGAG----------------------------------------------------------------------
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-----------------------------------------------------TACTAACGTACAGGGATCGGACGGTGG
ATCCGTGCAAAATTCGTTCCGGGCGTCCGACTCCGAAATGTCCAGCGAGACGTGCTTCTACAGTACTAAGCGTTGGACCA
ACGCACTACTAACTGTCCCTGGTTCGGACACGGCTTGAATGCTCGATCGCAAGACGGCTTCCCATATCAAGTGTC---CA
CCATATAAGGCGAGCGTATCCAGG----AGAAAGAGCGTATCACCCGATCGAGTCTGCACTG-------GCAATGGCGTC
CCTCGCGTTGATGCCGAGCTGGTTCCGCCGCCGCGCGCACGTCCCGTCCCCGGAGGAAGCGCGCGAGATCGCGAGGAGAA
AGAGAAAGGAAGAGTACGATCAGCTGATCGCTTCGCTAAGGCCGCGACCAAGCACATAGCGGAGTCGTCGGAGGGATCGC
CGGGAAGCGCTGGCTAACGAGGCCGCAAAGCGGGAGTGGATCGACGAGCAGAAACGGCTGATCGCGGAGGCGAAGCAGCG
ATCAGGCGGCGTCCCACATCCCTGCTGGAACGACGACGCGCGAG------A------CAGACGCAGGATGCGGGCGGCGG
TGGAGGAACTGTCGGCGGCTTTCGAGGCCAAGAAGAGCCAATGGATGGCCGCGCATAAGCGATCGGGGCTTGAGGAAGCT
CGGAGGAGCAGCGCCGCCGTGAAGGTTCACCCCCTCGTGTCCACGGAGGCGCCTCTGAAGCCCGTAACAGCCGCCGGGAA
GAGCAGCGCGGCAGGGGGCAGCGAGTCCGGCCGCCGGGTGGAGATGCACGAGGCGAAGGCCATCGAGCAGAAGCACCTGT
GGGGAGGCCGCCGCCGAAGCGATGAGTACTATGCCATGCGCGGGGAGGTACTGAGGAGAGACCGTGCCGCTCTCGACGAG
ATTACGGAGCCGCAATCTGCATGCGCGACGAGGA---AG---GGAGAAGATCGTATCTGTCCGTTCTGTTCTCGGCTTCT
CGCAGACAGGAGATAGATAGAACGACCGACCATGTTCAGTTCGCAGCTTTGTCCTGCGG-TGTAATCAGAGGTTTCGTGT
ACCAAGGGAATCAAAAAAAATTTAGTTCATCCTATCCTACTAAACTTTTGTGCATGGT--TC-TTAGCTTTGTCTTGGAT
ATTTTTCACCCTT-GTCCTCGATCGTCCGCATGGACATTTTCACAAATCAACTTTTTTTAAGGCAA--------------
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>chr4A_804
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-------------------------TCCGACTCCGAAATGTCCAGCGAGACGTACTTATACAGTACTAAGCGTTGGATCA
ACGCACTACTAACTGTCCCTGGCTCGGACACGGCTTGAACGCTCGACCGCAAGACGGCTTGCCATATCAGGTATC---CA
CCATATAAGTCGAGCGTATCCAGG----AGAAAGAGCGTATCACCCGATCGAGTCTGCAATCTGCACTAGCAATGGCGTC
CCTCGCGTTGATGCCGAGCTGGTTGCGCCGCCGCGCGCACGTCCCGTCCCCGGAGGAAGCGCGCGAGATCGAGAGGAGAA
AGAGAAAGGAAGAGTACGATCAGCTGATCGCTTCGCTGAGGCCGCGACCACGCACATGGCGGACTCGCCGGAGGGATCGC
CGCGAAGCGCTGGCTAACGAGGCCGCGAAGCGGGAGTGGGTCGAGGAGCAGAAACGGCTGATCGCGGAGGCGAAGCAGCG
ATCAGGCGGCGTTCCACATCCCTGTTGGAACGATGACGCGCGAGACAGACA------CAGACGCAGGATGCGGGCGGCAG
TGGAGGAACTATCGTCGGCTTTCGAGGCCAAGAAGAGCCAATGGATGGCCGCGCATAAGCGATCGGGGCTCGTGGAAGCT
CGGCGGAGCAGCACCGCCGTGAAGGTTCACCCCCTCGCGTCCACGGAGGCGCCTTTGAAGCCCGTAACCGCCGCCGGGAA
GAGCAGCGCGGCAGGGGACAGCGAGTCCGGCCGCCGGGTGGAGATGCACGAGGCGAAGGCCATCGAGCAGAAGCACCTGT
GGGGAGGCCGCCGCCGCAGCGAGGAGTACTATGCCATGCGCCGGGAGGTACTGAGGAGAGACCGTGCCGCCCTCGACGAG
ATTACGGAGCCGCAATCTGCATGCGCGACGAGGA---AGAAGGAAGAAGATCGTATCTGTCCGTTCTGTTCTCGGCTTCT
CGCTGACAGGAGATAGATAGAACGACCGACCATGTTCGGTTCGCAGCTTTGTCCTGAGGTTGTAATCAGAGGTTTCGTGT
ACCAAGGGAATCAATTCTTC-TTAGTTCATCATATCCTACTAAACTTTTGTCCATGGTAATCTTTAGCTTTGTCTTGGAT
A-TTTTCACCCTT-GTCCTCGATCGTCCGCATGGATATTTTCACAAAACAACTTTTTTCTAGGCCAA-------------
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>chr6D_2107
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-----------------------------------------------------------------------GGACGTCGA
TAACTGCCACACGTGTGGTGTATCGGGTGGTTGTGCCGCACGCCCTGTGTGGCACGGAGACGACCCCGCCCGCACGACCG
CGTCCGGGCGCGCGCAGCCACAGATCGCATGTCCAGTGCAGCGCGATCGCCCCGCACGAGCACGTACGGGCGAGCGAGCA
CGCGTCCCGCACGACTCGTCTCGGCCATCGCCCCTCCCCACCTGCGAGCGACACGCCCCGCGTGTCAGTAACCACGCGTC
CCGTCGCGATTGCCATGGTCCGGACCCTCTTCAGTTGCCATGTTGCTGAACTACAGTTGCCATGTCGGACAACTACAGTT
GCCATGTCGGACAACTACAGTTGCCATGGTTGCTCAACTGCAGTTGCCATCTTAGGTCAA-GTGCCGGATGCCGTTTTTG
GACAACTGCAGCTGT-GCCATGTATGGTCTGGTCTACTACAGTTACCATGATTTGAAAAACTTTAGGAATTGCCACCTAC
TAACACTGGACAGTTGCCATGTAGCACTAAATAAACATGGC-AAAAACATGTTTCGGGTAAAG-AGAGAGTTGTCATCTG
CTTACAAGCACGCTAGAGGCAGTTGCCATGTACCCTGCAAAAAACACATGGCAACTGATAGCTTTTGGTGTGTGGGAGAG
GAGACGGGCATGTGGGCGATGGTGGTATCTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGTAGCGCTACAA
ACAGACGTGGCAACAATAACATGTTCGGGTG
>chr6D_2107
GGAT----------------------------------------------------------------------------
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---------------------------------------------------------------------------GTCGA
TAACTACCACACGTGTGGTGTATCGGGTGGTTGTGCCGCACGTCCTGTGTGGCACGGAGACGACCCCGCCCGCACGACCG
CGTCCGGGCGCGCGCAGCCACAGACCGCACGTCCGGTGCAGCGCGATCGCCCCGCACGAGCACGTACGGGCGAGCGAGCA
CGCGGCCCGCACGACTCGTATCGGCCGTCGCCCCTCCCCGCCTGCGAGCCACACGCCCCGCGTGTCTGTAACCACGCATC
CCGTCGCGATTGCCATGGTCCGGAGCCTCTTCAGTTGCCATGTTGCTGAACTACAGTTGCCATGTCGGACAACTACAG--
--------------------TTGCCATGGTTGCTCAACTGCAGTTGCCATCTTAGGTCAAAGTGCCGGAGGCCATTTTTG
GGCAACTGCAGCTGTTGCCATGTATTGTCTGGTCTACTACAGTTACCATGATTTGAGAAACTTTACGAATTGCCACCTAC
TAACACTGGACAGTTGCCATGTAGCACTAAAAAAACATGGCAAAAAACATGTTTCGGGTAAAG-AGAGAGTTGTCGTCTG
CTTACAAGCACGCTAGAGGCAGTTGCCATGTATCCTGC-AAAAACACATGGCAACTGATAGCTTTTGGTGTGTGGGAGAG
GAGACGGGCATGTGGGCGATGGTGGTATCTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGTAGCGCTACAA
ACAGACGTGGCAACAATAACATGTTCGGGTG
>SNPs
---------------------S----------------------------------------------------------
--------------------------S------S----------------------------------------------
----------------S-------------------S-------------------------------------------
-------S----S-------------------------------------------S-----------------------
-----------------S-------------S------------S-----------------------------------
--SS-S---------------S-SS---------------SS-S-------SS----------------S----------
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------------------------------------------S-------------S----S-S--------S-------
---SSSSSS--SSSSSS---------------------S------------------S---S-S---------S------
---------------------SSSSSSSS------S-------S-------S----------S--------S---S-S--
-------------------S----------S-------------------------------------------------
----------------S---------------------------------------------------------------
------------------------SSSS----------------------------------------------------
------------------------------------------------------------------------------S-
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--------------------------------------------S-----------------------------------
---------------------------------------------------SSSSSS-----------------------
---------------------S--------------------------------------------------------S-
------S-------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
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--------------------------S-------SSS-------------------------------------------
------------------------------------------------------------S---S---------------
S---------------------------------------S---------------------------------------
-------------S------------S---S--------------------------S-----S---SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---
---------S-----------------------------------------------------S--------------S-
S----------------------------------------------------------S--------------S-----
--S---------------------S----------S-----------S--------------------------------
-S-----------------------------S---------------------------------S-SSS----------
---------------------------SS---------------------------------------------------
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--------------------------------------------------------------SS---------S------
------------------------------------------------------S------------S------------
---S--------------------------------------------------------------------S-------
----------------------S--------
>forward_749
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---------CGGCTGTCGTGCATGTTATC---------------------------------------------------
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>reverse_2149
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--------------------------------------------------------------------TTAGGACGCCGA
TAACTGCC------------------------------------------------------------------------
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