>input_sequence_70287
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-ATGGCGGCGAGCGAGCAGAGCTCGGAGTCCTCGTCGACGTCCTGCACTTCCTCCTACTCCACGTCCTCGTGCTCCCCCA
GGGCCGACGACAAGAAGC---AGAACGGCGGCAACAAGCGGAAGCGCGCAGCGGCGGCC---------GACGAGGAGCCG
GCCCCGGCGGCGGCGTCGTCGGCGTCGT------ACCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGGAGAT
CAGGGAGCCGCGCAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCCGCGCGCGCCCACGACGCCG
CCGCGCTCAGCATCAAGGGCGCCCGCGCCGTGCTCAACTTCCCGGACCTAGCGCCCGCGCTCCCGCGCCCGGCCTCCCTC
GCCCCGTGCGACGTCCAGGCCGCCGCCGCGCGCGCCGCCCTCATGCACGACCACGACCACCAGTGCTGCTCCGCC-----
-TCAACCTCCCCCGCCGCCGCTCCCGCCTCTCCGCGCGGCAATACCCCGGCGCCATGCGGCCAGCCGGCCGCGCGAGACG
AGCCGGAGCATCAGCC---GCCGTTCCAGCCGAGCCAGGGAAACGAGCAGCAGCTCACGGCTGCACAGGTGGAGATGGTG
TTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGACTTCGCGCCGTCCGATCACTGCTGGACGGCGTACGATTG
TCTCGACCCCATCGGCTTCCAGCCTCTCCTGTGGGAGTATTAG-------------------------------------
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>chr3D_1_TraesCS3D01G141200
CTGGTGCGACAAATTATCCTTTTTTTTTCTCTTTCAATGTTGATTGTACAAGCCATTTTGGCTGATTTTTTTTTTACTT-
---TTTTATTTGCTCTTGCTTTGTCAAGGGATGGTTCCTACCTGTCAATTGGGGAGCAAGAAATATGAGTGAAAAATTGG
AGTGCGGTTTTAGTTCGATCTCAAAATCTCC-CCCGCGGACAGGTAAGACTCATCCCCGCGGAG-CTGAGAGCAAACCAC
ACAAAACCAAACAGTAAAATAAACCAGCCA-------ATGCACAGTCAACACTGAAACAGAAAAAG--TAAATAAAT-GG
GATAATTTGTGGCACAATTTTGCTTACATTGAGTAAAAATATATTGAAAAACTACTAAATGGGATAATTCTTTTCACAAA
TGTGAAACATGGGGTACAAATAGAATT-----------------------------------------------------
--------------------------------------------------CAATCTTTAATAATTAATTTATAAAAATTA
TAGTGGAGTTTTATCCTACCGTTGCCCTTCAAA-GAAAAATGTCGAGTGAGAAATGACTATTTCTAATTCGACTGTGCTA
TAGACGTTTT---TATTTCGAAGACAACATATA-----------------------------------------------
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-----------------CTGCGTTCTGAAATGTCAGTGAGT-CAAGTGAATCGTTGGGAGGCTCCGTTTCAAAATAGATG
ACCCAACTTTGTACTATTTAGTAGTATAAAGTTGGGTCATCTATTTTAAAACGGAGGGAGTAAGTTGTAGCAGGGCATGG
AGTCAGGAGAGGGAGGCATGCAG----CTCCGGGCCGGGCCGGTCCATCCCT--GAGAGAGACCATGCGACCCTAATTAT
TGATCA--ATGGCGGAGTCAGCTGTCGTTCATGGGTTCCTATCCCACGCCACGTTGCCTCCACTCTCCTCT-----ACAT
ATACAGCACCACCTCCCTCTTCCTCCTCGCTCTACCCCTCTACTTGCTCGCAGTAACTCTAGTTCTAGCTACTCCCTGCA
CGGTCCTCCCATTACCACGAGCGAGCGCGTGTCATCTCATCTGGGCGCCCGGGCTACGCGGTGCTCGATCTCTGCGCGCG
CATGGCGGCGAGCGAGCAGAGCTCGGAGTCCTCGTCGACGTCCTGCACTTCCTCCTACTCCACGTCCTCGTGCTCCCCCA
GGGCCGACGACAAGAAGC---AGAACGGCGGCAACAAGCGGAAGCGCGCAGCGGCGGCC---------GACGAGGAGCCG
GCCCCGGCGGCGGCGTCGTCGGCGTCGT------ACCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGGAGAT
CAGGGAGCCGCGCAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCCGCGCGCGCCCACGACGCCG
CCGCGCTCAGCATCAAGGGCGCCCGCGCCGTGCTCAACTTCCCGGACCTAGCGCCCGCGCTCCCGCGCCCGGCCTCCCTC
GCCCCGTGCGACGTCCAGGCCGCCGCCGCGCGCGCCGCCCTCATGCACGACCACGACCACCAGTGCTGCTCCGCC-----
-TCAACCTCCCCCGCCGCCGCTCCCGCCTCTCCGCGCGGCAATACCCCGGCGCCATGCGGCCAGCCGGCCGCGCGAGACG
AGCCGGAGCATCAGCC---GCCGTTCCAGCCGAGCCAGGGAAACGAGCAGCAGCTCACGGCTGCACAGGTGGAGATGGTG
TTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGACTTCGCGCCGTCCGATCACTGCTGGACGGCGTACGATTG
TCTCGACCCCATCGGCTTCCAGCCTCTCCTGTGGGAGTATTAGGCCTGTGCCGTACAACA--------CCTTGATTTCCT
---TTCTTCTTCTTTTCTTGGT-TTTGTGTGGTTTTCTAGTGCTGCTTAAAATGAAGCACATTTTTCGCTTTGTCATTTG
GTTTGCG------CATGCTTGGGTTTGGACTACTTGTAAG-TTGATATGCTTGTGACCAATTTAGCTTAGATGTGAGCTG
AGTTTGAACATATAAGAATCTAATGTACATGTG------------AATTATGTGGGGTTTAGATGACCGCAAAATTACGG
GTTTTCTTACAGGTGAAATGAACCAACCTCAACATGATAGCTCTGGTGATACTTTGGCCATGCGATGTAGTTTTCGGGAA
TTAACTTGACATACCACCTCAGATATGTGACGCAATTGCTTGACAACGATGCTAGCTCGCTTGTTTTACAACACGGGAAG
CGTCATCTTTCTCGAACCTATC----TTATTTCAACAACGGAG----AA------------------------ATTAAAA
CTCGTTGTGGTATAAGCTATTGACTTTCACTGAGCAGTAACTTATATTGCTCAACAGGTCGATCGCTTTCGTTATACCAC
GTGATGAGT-TGATGACATGACTT-GGTGTGGTCGCGATTAGTCTGCGTTGATCGATAGAGCACACCTCCTCTGTCGTTT
GCATGGATCTTGGATTTTCTT--TCCGAGTATATTGGTTTCAAATACATCTCATGTATTCAACCACAACATGTTTCTAAA
CATGATTATCTTCTTAATGATCCCCTTAATCACTCTATCCCTGTGTAGAAACGATATAAACTACTAAGTAGCTTAATTAT
TCAGGGCATGAAATAATTGATATTTCAGGCTGGAGCGGAAGAGTCTTTCTTCTTCTTTTATGCGTTCTGAAACGATGGTG
AGGACTTCCGGCCTCTACATCGATTGATGCATGCAAAGCTGAAGAACCTTGGTAATCATTTTTCTTTGCATTAATAGACC
AATTATTTTTGACACCTCAGAGGCCCTACCGAGATTTTTCATAAATGAATCGAAGAAGGTACTGCTATAT
>chr3B_1
CTGGTGCGACAAATTATCCTATTTTTTTCTCTTTAAATGTTGATTGTACATGCCATTTTGGCTGTTTTTTTTAC----T-
---TTTTATTTGCTCTTGATTTGTCAAGGGATGGGTCCTACCTGCCAGTTGGGGAGCAAGAAATATGAGTGAAAAATTGG
AGTACGGCTGTAGTTTGAACCCGAAATCTCCCCCCGCAGACAGGTAAGACTCATCCCCCGCCGGACCGAGAGCAAACCAG
ACAAAACCAAACAGTAAAACAAACCAGCCAATATGGCATGCACAGTCAACACTGATTCAGAAAATAAATAAATAAATGGG
GATAATTTGTGGCACAATTTTGCTTACATTGGGTAAAAGTACATGGAAAAACTACCAAATGGGACAATTCTTGTCACAAA
CGTGAAACGTGGGGTACAAATAGAATTAACCCTGATGTAATTCCATTTGTACATTTTCCTCTGACAATTATTGAAAAAGT
AGAGTTACAGTAGGGTTTTACCCTACTATTTTTCTCAAAAAAAAAGAATTCACTCTT---TAATTAATTTATAAAAATTG
TAGTGGGGTATTATCCTACCGTTGCCCTTCAAAAGAAAAATGTCGAGTGAGAAATAATTATTTCTAATTCGACCGTGCTA
TAGACGTTTT---TATTTCTAAGACAACATATA-----------------------------------------------
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-----------------CTGCGTTCTGAAATGTCAGGGAGTCCAAGTGAATCGTTGGGAGGAATTGAATGTCTAGG----
-----------------------------------------------------------------TGTAGCAGGGCATGG
AGTCAGGAGAGGGAGGCATGCAG----CCCCGCCCGGTCCT-GTCCGACCCT--GCGAGAGACCATGCGACCCTAATTAT
TGATGATCATGGCGGAGTCAGCTGTCGTTCATGGGTTCCTATCCCACGCCACGTTGCCTCCACTCTCCTCT-----ACAT
ATACAGCACCACCTCCCTCTTCCTCCTCGCTCTACCCCTCTCCTTGCTCGCAGTAACTCGAGTC----CTACTCCCTGCA
CGGTCCTCCCATTACCACGAGCGAGCGCGTGTCATCTCATACGGGCACGCGGGGCTACGTGGTGC---TCTCTGCGCGCA
CATGGCGGCGAGCGAGCAGAGCTCCGAGTCCTCGTCGACGTCCTGCACTTCCTCCTACTCCACGTCCTCGTGCTCCCCCA
GGGCCGACGACAAGAAGC---GGAACGGCGGCGGCAAGCGGAAGCGCGCAGCGGCGGCC---------GACGAGGAGCCG
GCCCCGGCGGCGGCGG---CGGCGTCGT------ATCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGGAGAT
CAGGGAGCCGCGCAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCCGCGCGCGCCCACGACGCCG
CCGCGCTCAGCATCAAGGGCGCCCGCGCCGTGCTTAACTTCCCGGACCTCGCGCCCGCGCTCCCTCGCCCGGCCTCCCTC
GCCCCGTGCGACGTCCAGGCCGCCGCCGCGCGCGCCGCCCTCATGCACGACCACGACCACCAGTGCTGCTCCGCC-----
-TCAACCTCCCCCGCCGCCGCGCCGGACTCCGCGCGCGGCAATGCCCCGGCGCCATGCGACCAGCCGGCCGCGCGAGACG
AGCCGGAGCATGAGCC---GCCGTTCCAGCCGAGCCAGGGAAATGAGCAGCAGCTCACGGCTGCACAGGTGGAGATGGTG
TTCGACGAGCTGGCGCCGCTGTGGGTGGAGAACGTGGTGGATTTCGCGCCGTCCGATCACTGCTGGACGGCGTACGATTG
TCTCGACCCAATCGGCTTCCAGCCTCTCCTGTGGGAGTATTAGGCTTGG--CGTACAACA--------CCTTGATTTCCT
---TTCTTCTTCTTTTCTTGGTTTTTGTGTGGTTTTCTAGTGCTGCTTAAAATGAAGCACATTTTTCGCTTTGTCATTTG
GTTTGCGTTTGCGCATGCTTGGGTTTGGACTACTTGTAAG-TTGAGATGTTTGTGACCAATTTAGCTTAGATGTGAGTTG
AGTTTGAACA--TAAGAATCTAATGTACATGTG------------AATTATGCGGTCTTTAGGTTACCGCAATATTACAG
GTTTTCTTACCGGTGAAATGAACCAACCTCAACATGATAGCTCTGGTGATACTTTGGCCATGCGATGTAGTTTTCGGGAA
TTAACTTGACATACCACCTCAGATATGCGACGCGATTGCTTGATAACGATGTTGGCTTGCTTGTTTT-CAACACGGGGAT
CATCATCTTCCTCAAACCTAACTATGTTATTTCAACAACAGAG----ATTAAATTCGCAAAAAAAAAACAGAGATTAAAA
CTCTATGTGGTATAAGCTATTGACTTTTACTGAACAGTAACTTATATTGCTCAACAGGTCGATCGCTTTCGTTATACCAC
GTGATGAGT-TGATGACATGACTTTGGTGCGGTCGCGATTAGTCTGTGTTGATCGATAGAGCACGCCTCCTCTGTCGTTT
GCATGGATCTTGGTTTTTTTTTTTCCGAGTATATTGGTTTCAAATATATCTCATGTATTCAACCACAACATGTTTCTAAA
CATGATTATCTTCTTAATGATCCCCTCAATTACTCTATCCCTGTGTAGAAACGATATAAACTAT---GTAGCCTAATTAT
TCAGGGCATGAAATAATTGATATTTCAGGCTGGAGGTGAAGAGTCTTTCTTCTTCTTTTATGCGTTATGAAACGATGGTG
AGAACTTCCGGCCTCTA-ATCGATTGATGCATGCAAAGCTGAAGAACCTTGGCAATCATTTTTCCTTGCATTAAAAGACC
AATTATTTTTGACACCTCAGAGGCCCTACCAAGATTTTTCAGAAATGAATCGAAGAGGGTACCGTTATAT
>chr3A_1
CTGGTGCGACAAATTATCCTATTTTTTTCTCTTTCAATGTTGATTGTACATGCCATTTTGGCTGATTTTTTTAC----TG
TTTTTTGATTTGCTCTTGATTTGTCAAGGGATGGGTCCCACCTGTCAATTGGGGAGCAAGAAATATGAGTGAAAAATTGG
AGTTC-----------GAACCCGAAATCTCC-CCCGCAGACAGCTAAGACTCATCCCCAGCCGAACTGAGAGCAAACCAG
ACAGAACCAAACAGTAAAATAAACCAGCCAACATGGCATGCACAGTCAACACTGAAATGGAAAATAACTAAATAAAT-GG
GATAATTTGTGGCACAATTTTGCTTACATTGGGTAAAAATATATGAAAAAACTACTAAATGGGATAGTTCTCGTCACAAA
CGTGAAACATGTGGTACAAATATAATC-----------------------------------------------------
--------------------------------------------------CACTCTT---TAACTAATGTATAAAAATTA
CAGTGGGGTTTTATCCTACTATTGCCCTTAGAAAAAACA---TCGAGTGAGAAATGATCATTTCTAGTTCTACTGTGCTA
TAGACGTTTTATTTATTTCTAAAACATCATATGGAGTATACTATAGTACTACTCCCTCCGTTTCAAATTACTCGTCGTGG
TTTTAGTTTAAATTTAAACTAAAACCACGACGAGTAATTTTGAACTAAAACCACGATGAGTAATTTAGAATGGAGGGAGT
AGTTTTGAAGAGGCGTGCTGCATTGTGAAAGTTGAGGGAGC-TAAGTAAATCGCTGGGAGGAATTGAATATCTAGG----
-----------------------------------------------------------------TGTAGC---------
---CAGGAGAGGGAGGCATGCAGGCAGCTCCGGGCAATGCCGGTCCGTCTCTGAGAGAGAGACCATACGACCCTAATTAT
---TGATCATGGCGGAGTCAGCTGTCGTTCATGGGTTCCTATCCCACGCCACGTTGCCTCCACTCTCCTCTCCTCTACAT
ATACAGCGCCACCCTCCCTCTTC-CCTCTCTACATCTCCCTCCTCGCTCGTAGTAACTCGAGTC----CTGCTCCCTGCA
CGGTCCTCCCATTACCACGAGCGAGCGCGTGTCATCTCATACGGGCGCGCGGGGGTACGTGGTGC---TCTCTGCGCGCG
CATGGCGGCGAGCGAGCAGAGCTCCGAGTCCTCGTCCACGTCCTACGCTTCCTCCTACTCCACGTCCTCGTGCTCGCCCA
GGGCCGACGCCAAGAAGCGGCAGGACGGCGGCAACAAGCGGAAGCGCGCGGCGGCGGCGGGCGAGGAGGAGGAGGAGGCG
GCCCCGGCGGCGGCGG---CGGCGTCGTCGTCGTACCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGGAGAT
CAGGGAGCCGCGCAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCCGCGCGCGCCCACGACGCCG
CCGCGCTCAGCATCAAGGGCGCCCGCGCCGTGCTCAACTTCCCGGACCTCGCGCCCGCGCTGCCCCGCCCGGCCTCCCTC
GCCCCGTGCGACGTCCAGGCCGCCGCCGCGCGCGCCGCCCTCATGCACGACCACGACCACCAGTGCTGCTCCGCCTCAAC
CTCAACCTCCCCCACCGCGGCGCCGGCCTCCGCGTGCGGCAATGCGCCGGCGCCAAGCGACCAGCCGGCCGCGCGGGACG
AGCCGGAGCATGAGCCGGAGCCGTTCCAGCCGAGCCAGGGAAGCGAGCAGCAGCTCACGGCCGCGCAGGTGGAGATGGTG
TTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGACTTCGCGCCGTCCGATCACTGCTGGACGGCGTACGATTG
TCTCGACCCCCTCGGCTACCAACCTCTCCTGTGGGAGTATTAATTAGGCTTGCTGTAAAACACCCGCCCCTTGATTTCCT
CTCTTCTTCTTCTTTTCTTGGT-TTTGTGTGGCTTTCTAGTGCTACTTAAAATGAAGCACATTTTTCGCTTTTTCATTTG
GTTTGCGCACGTTCGGGTC--GGTTGGGACTACTTGTAAGTTTGAGATGTTTGTGACCAATTTAGCTTAGATGTGAGTTG
AGTTTGAACA--TAAGAATCTAATGTACATGTCAAAATAAAATAAAATTACGCGGGCTTTAGGTTACCGCAAAATTACGT
GTTTTCTTATGGGTGAAATGAGCCAGCCTCAACATGATAGCTCTGGTGGTACTTTGGGCATGCGATGTAGTTTTCATGAA
TTAACTTGCCAAACCACCTGAGATATGTGAAGCAATTGCTTGACATTGATGTTGGCTTGCTTGTTTTAGGACAC------
-ATCAACTTTGTTGAACCTAA-----TTATTTCAACAACGCGCGGATAA------------------------ATTCAAA
CTCTTCGTGGTGTAAGCTATTGACTCTTACTGAGCAGTAACTTATATTGCTAAGCAGGTCGATCGCTTTCGT--TACCAC
GTGATGAGTCTGATGACATGACTT-GGTGTGATCGATATTAGTTTGCATTGATCGATAGAGCACGCCTCCTCATTTGTAC
CCATGTATCTTGGG---TTTGTTTTCGAGTTTATCGGTTTCAAATGTCTCTCATGTATTCAACCACAACATGTGTCTAAA
CAAGATTATCTTCTTAATCATCTCCTTAATTACTCTATCCCTAATTCCCTATGTAG------------------------
-----------AATCATCGATATTTCGGGTTGGAGCTGAAGAGTCATATTTTTC----------TTCTGAAGTGGTGGCG
AAAACTTCCGGCCTCTACATCGATTGATGCACGCGCACCTGAAGAACCTTGCTAACCATTTTTCTTCGCGTTGGTCGACC
AACTAATTTCGACCCTGAGA--------------------------------------------------
>SNPs
--------------------S-----------------------------S---------------------SSSSSS--
------------------S---------------S---------------------------------------------
---S---S-S-----S--S-S-S--------------S--------------------SSSSS----------------S
----------------------------------------------------------------SS--------------
-------------------------------S------------S---------------------------S-------
S-------------------------------------------------------------------------------
----------------------------------------------------S----SSS--------------------
------S--------------------------------------------------S----------------------
-------------------S------------------------------------------------------------
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------------------------------------S------------------------SSSS-SS-SSSS-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-----------------------------------S-S--------S---------------------------------
----S---------------------------------------------------------------------------
-----------------------------------------S-----------------S---SSSSS------------
----------------------------------------SS------S----SSSSSSS-SSSSSSS------------
------------------------S-------------------------------------------------------
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---------------SSSS-------------------------------------------------------------
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-------------------------------------------------S--------------S---------------
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---------------------S--S-----SS-----------S---------------S--------------------
-----------S--------------------------------------------------------------------
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---------------------------------------------S--SSS-----------------------------
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---------------------------------------------S---S---------------------------S--
----------SS----------------------------------------S---S-----S-S---------------
----------S---------------------------------------------------------------------
---------------------------------------------------S-S---S-------------------S-S
-S------------------S-----------------------------------------------------------
---S-----------------------S----------------------------------------------------
----------------------------------------------------------------S---------------
-------------S----S---------------------------S---------------------------------
------------------------------S--------------------------------SSSS-----S-------
------------------------------------S-------------------------------------------
--S-----------------------------------------------------------------------------
------------------------------S----------S--------------S-----S-S-----
>forward_220
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----------------------------------------CAGGTAAGACTCATCCCCGC--------------------
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>reverse_2046
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---------------------------------------------CTGTGCCGTACAACACCTTG---------------
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