>input_sequence_70270
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----------------------------------------ATGTCATCTGCGCCTCCCTCCTGGACCAGCCAGTCGGCGG
CTCGATCGACACGAACGCTGATTGCGTGTGCACGCGAGGGACACAGCTCAACTACTTCATGGCCT---------------
------ACACGACCTCCTTCATGGGGCTCATCAATGGGCGGCAGTGACAGGAGCTGGAGGTTCCGGCGAGGCGGTGGCGC
TGGCAAAGGTGAGGCGTCGAACGCGCGTGCCCGGGTGCTGGCTTG--GCTGCAGGAGGCCACGGGCCTCGCCACGCTCTT
CAACATGGTGACATGGGGGTGGCTGGACGCCGATGTGCCAGAGGACTTCATGAACCGGGCAAGCATCAAGATGGTGCTGA
CCGTGCGGACCAATGTCTCGTGGGAGGCCTACGCGGCGGTGATGGTCACCGCGTCGCAGGTGGAAGCGCTACTGCGGCGA
GAGGGCATGCGCATGCTGCTGTACGAGGGTGTCTGGGACCTGTGGGACGGGAAGGCATGGCTGGAGGAGGTAGACTGGGA
CTGGATGACGACGCTGAGGGAAGCAGAGCGGGCCCTGTGGCGCAGCATCGCTACCCACTGGCGCTTCGTCCACGGCCATC
CTCCTAAGCTTAGCGCTGCCGATTGTGGCCTGGCTACTCGATGCTTGACCTGTCAGCTGCATCTTGGTACATGGAGCTGG
AGCATAGGAACCATCTCTGCCGTCCACCCCTCCTCGCTTCTCCGGCAAGCTTACCGGGCCGGCGGCCACCGTCCCTAG--
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>chr1B_1_TraesCS1B01G145100
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATGATATGTAATTGCCCTAC
ACATGGGTTGAATTTGTGGATGATTATACAAAAAATTTATGCCGGATTGAATTTTGCTTCTAGAAATCTTTTAGATTCGG
CTGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTAATTATTCTCAA
TGACACATCAAAAGATCCACTAGTAAAAAAGTTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGAATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTAATTCTAATGATATGCCTTTGTCCACTTTGATTGAGTATAATAATG
AATCTATGGATGTGAATTTTGTTGGTAGAAACAATTTTGGTAACAACACGTATGAAGGCAATTTTAATCCTAGGCCGTTT
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTAAAACAACTTTTATGAAAATTTTAATAGAGAAAAATTCGCTGGAGG
TCCTCACACTCATCGCGTTGGCCAATTTAGTCCTCGTAGTTAGAAATACCCGAAATACGACCATTAAACTTGTCTCAGGG
GTTCACATACGGTCCAATCTATGATTTTTTATACGTATGCGCTAATTTGGCAGTTGACTGGCTTGTTCACGCGTGCGTTC
ATCGCCAACTCAACAGCACCTTTTTGGAACGAATCAATACAGGGTTTTCTTTGCAAAATTTCCGTAATTAATGCTTCGCC
CCTCACCTGGTCGGACCGCACCTGGTCTGCCGCCCCCGCACCTCACCCCTCGCTCTCCTCTCCTTTCCCCTCTCAATGTA
CCCTACTCCCCAAAATTTCATCCTCGTTGTCGCTTGCCTCCGGCGCCGCCGCAGCCACTACTGCCGCCCTAAGCTGCAAC
CGCCTGGATCAACTACCCCCTAGACGACGACGTCATCGACATGTCATCTGCGCCTCCCTCCTGGACCAGCCAGTCGGCGG
CTCGATCGACACGAACGCTGATTGCGTGTGCACGCGAGGGACACAGCTCAACTACTTCATGGCCT---------------
------ACACGACCTCCTTCATGGGGCTCATCAATGGGCGGCAGTGACAGGAGCTGGAGGTTCCGGCGAGGCGGTGGCGC
TGGCAAAGGTGAGGCGTCGAACGCGCGTGCCCGGGTGCTGGCTTG--GCTGCAGGAGGCCACGGGCCTCGCCACGCTCTT
CAACATGGTGACATGGGGGTGGCTGGACGCCGATGTGCCAGAGGACTTCATGAACCGGGCAAGCATCAAGATGGTGCTGA
CCGTGCGGACCAATGTCTCGTGGGAGGCCTACGCGGCGGTGATGGTCACCGCGTCGCAGGTGGAAGCGCTACTGCGGCGA
GAGGGCATGCGCATGCTGCTGTACGAGGGTGTCTGGGACCTGTGGGACGGGAAGGCATGGCTGGAGGAGGTAGACTGGGA
CTGGATGACGACGCTGAGGGAAGCAGAGCGGGCCCTGTGGCGCAGCATCGCTACCCACTGGCGCTTCGTCCACGGCCATC
CTCCTAAGCTTAGCGCTGCCGATTGTGGCCTGGCTACTCGATGCTTGACCTGTCAGCTGCATCTTGGTACATGGAGCTGG
AGCATAGGAACCATCTCTGCCGTCCACCCCTCCTCGCTTCTCCGGCAAGCTTACCGGGCCGGCGGCCACCGTCCCTAGCG
TCCATGAACGTGTTCCTCGGTGCCCTGGCAGCTCACCAACTTCTCTGCTCACTGCATCGCTACTTACAGGCACTTCATTC
ATGGCTCCCAGCTTAGCTAT-GCCGGTTGTGGCATGGCTACTGGACATTTGACCTGTTGGTTGTATCTTAGGACATGGAG
CTGGAACTGCTGGCTGCATCTTGGCACGTGAGAATGTGCAATAGCTCTATTGCCAGTGACCAATCTGCTGATACATGTGC
AATCTACAAAAGTTTCGGTGATCTACATAGCATGTTGTTCTATCAACACCGAAGATGATCACCAGAAGGAAAAAGGAAGA
CAGAAGAGCCAGCAGAACGATCAGTAGATCTCCATCTCAGTCTGTTGTTGTGCATGCCTCTGTCATATGTAGTTTAGGAT
GGTTGATGCTTTGTACATTTTTCTTCAGAATTTCCTACTCAAGTTAAGATAGGGTAGTTGATGCGGATTGGAGAGCTTCT
GTTGTATAAATGAATTTGATGTACACCCAAGAATACAATCTGCAATCTGTATTGCTTCCTGCTTGCTTGTTGAATAAAGA
GATAAACAGAGTCATGACAAATACCATGAGCCTTTTGAAGCTCCTGTAGAATCTGCAATGTGCATTGTTGCACTTGCCTG
TTCCTGGTACTTGAAGCTCTTGGCATTAGTAGTTCATAATACTTACACTGACGGTAGAAAGTTATAGGGAAATATACAAC
AGAACAAAGAGAAGCAAACAAATACAACTTGATCATCAGATCATTTTTTAGGGGATCATCAGATCAATTTCAGTTGAAAC
TTAGAACTTCAGGAAAGTTTCGCTTCGTCCATGACAATGGGGCAAAAATTGAAGTTGACTAATTACATGGTGAAAAATTA
CAGTTGTTACATCACACAATTGAATTTACAGTGACAAGCACTCCCACCAGAATCATTGCGGCAATTACAAATCACACAAT
TGAATTTACAGCCTCCCAATCTGCATCAACACCAAAAGA
>chr2B_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGTGGATGAAATTAATGATACGTAATTGCCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAAAATTTATGCCGGATTGAATTTTCCTTCTAGAAATCTTTTAGATTCGG
CTGCGGGAGGCACTTTTAAGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTACGGTTAATTATTCTCAA
TGGCACACCCAAAGATCCACTAGTAAAAAAGTTCATGAGATTGAACAGATTAATGTTTTGAGCGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTAATCCTAATGATGTGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCTATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACACGTATAGAGGCAATTTTAATTCTAGGCCGTTT
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTACAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr7A_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATGATACGTAACTGCCCTAC
ACATGGTTTGAATTTATGGATGATTATACAAAAAATT-ATGCCGGATTGAATTTTGCTTCTAGAAATCTTTTAGATTCGG
CCGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTAATTATTCTCAA
TGGCACACCGAAAGATCCACTAGTAAAAAAGTTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCTATGGATCTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACATGTATAGAGGAAACTTTAATTCTAGGCCGTTT
CTTAGTAATTCCTCTAATAATTATGGTAATTCCTACAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr6A_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATAATATGTAATTGCCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAAA-TTTATGCCGGATTGAATTTTTCTTCTAGAAATCTTTTAGATTCGG
CCGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTAATTATTCTCAA
TGGCACACCGAAAGGTCCACTAGTAAAAAAATTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCTATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACGCGTATAAAGGAAACTTTAATTCTAGGCCGTTT
CCTAATAATTCCTCTAATAATTATGGCAATTCCTACAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr6B_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGTACAAGCTTGGGAGAGGATGAAATTAATGATACGTAATTGCCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAAAATTTATGCCGGGTTGAATTTTGCTTCTAGAAATCTTTTAGATTCGG
CCGCGGGAGGCACTTTTATGGAAACCACTTTAGGAGAGGCTACTAAACTCTTAGATAATATTATGGTTAATTATTCTCAA
TGGCACATCGAAAGATCCACTAGTAAAAAAGTTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTATTTGGTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCTATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACGCGTATAGAGGCAATTTTAATCCTAGGCTATTT
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTATAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr5D_1
ATGAATTTTAAGCAACTTGATAATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATGATACATAATTGCCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAAAATTTATGCCGGATTGAATTTTGCTTCTAGAAATCTTTTAGATTCGG
CCGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTAATTATTCTCAG
TGGCACACCGAAAGATCCACTAGTAAAAAGGTTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTGTTTACTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAAT-ATG
AATCTATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACGCGTATAGAGGAAACTTTAATTCTAGGCCGTTT
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTACAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr3D_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATGATACGTAATTGTCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAAAAATTATGTCGGACTGAATTTTGCTTCTAGAAATCTTTTAGATTCGG
CCGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTATTTATTCTCAA
TGGCACACCGAAAGATCCACTAGTAAAAAACTTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCTATGGATGTGAATTTTTTTGGTAGGAACAATTTTGGTAACAACACGTATAGAGGAAACTTTAATTCTAGGCCGTTT
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTACAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr2D_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTCGCACAAGCTTGGGAGAGGATGAAATTAATGATACGTAATTGCCCTAC
ACATGGCTTGAATTTGTGGATGATTATACAAAAAATTTATGCCGGATTGAATTTTGCTTCTAGAAATCTTTTAGATTCGG
CCGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTAATTATTCTCAA
TGGCACACTGAAAGATCCACTAGTAAAAAAGTACATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGACTGAGAATAATAATG
AATCTATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACGCGTATAGAGGAAACTTTAATTCTAGGCCGTTT
CCTTGTAATTCCTCTAATAATTATGGTAATTCCTACAACAATTCTTATGGAAATTTTAATAAGA----------------
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>chr1D_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATGATACATAATTGCCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAAAATTTATGCCGGATTGAATTT--CTTCTAGAAATCTTTTAGATTCGG
CTGCGGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAGTATTATGGTTAATTATTCTCAA
TGGCACATCGAAAGATCCACTAGTAAAAAAGTTCATGCGATTGAAGAGATTAATGTTTTGAGTGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCAATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACGCGTATAGAGGAAACTTTAATTCTAGGCCATTT
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTACAACAACTCTGATGGGAATTTTAATAAGA----------------
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>chr4D_1
ATGAATTTTAAGCAACTTGATCATGAGCATGTTGCACAAGCTTGGGAGAGGATGAAATTAATGATACGTAATTGCCCTAC
ACATGGTTTGAATTTGTGGATGATTATACAAAATTTTTATGCCGGATTGAATTTTGCTTCTAGAAATCTTTTGGATTCGG
CCACAGGAGGCACTTTTATGGAAATCACTTTAGGAGAAGCTACTAAACTCCTAGACAATATTATGGTTAATTATTCTCAA
TGGCACACCGAAAGATCCACTAGTAAAAAAGTTCATGCGATTGAAGAGATTAATGTTTTTAGTGGAAAGATGGATGAACT
TATGAAATTGTTTGCTAATAAAAGTGTTTCTTCTGATCCTAATGATATGCCTTTGTCCACTTTGATTGAGAATAATAATG
AATCTATGGATGTGAATTTTGTTGGTAGGAACAATTTTGGTAACAACGCGTATAGAGGAAACTTTAATTCTAGGCCGTTC
CCTAGTAATTCCTCTAATAATTATGGTAATTCCTACAACAACTCTTATGGAAATTTTAATAAGA----------------
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>chr1B_960
CCC-----------------------------------------------------------------------------
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--CCTGGATCTACTGCCCCCTCACCAACGGCGTCGTCGACATGTCATCTGCGCCTCCCTCCCGGACTAGCAAGTCTGCGG
CTCGATCGGCATGAACGCTGATTGCGTGTGCACGCGAGGGACGCGACTCATACTGGTGGTGGTAGTGGTGGCGGCCATGT
ACGCGGACACGACCTACTTCATGGGGCTCATCAACCCGCGGCGGCGGCAGGAGCTGGACGTTCCCCCGAGGCGGTGGCGC
TGGCAAGGGCAAGGCGACGAATGCGCGTGCCCGAGTGCTGGCGATGCGCTGGAGGAG-----------------------
--------------------------------------------------TGAACCGGGCAAGCATCAAGATGGTGCTGA
GCGCGCGGACCAACGTCGCGTGGAAGGCCTGCGCGGCGGTGGTGGTCACCGCGTCGCTGGTGGAGGCGGTGCTGCGGTGG
GAGGGCGTGCGCGTGCTGCTGTACGAGGGTGTCTGGGACCTGCGAGACGGAGAGGCGTGGCTGGAGGAGGTAGACTAGGA
CGGGATGACGACGCTCAGGGAAGCGGAGTGGGTCCTGTGGCGCAGCATCGCTACCAACCGACGCTTCGTCCACGGCCATC
CTCCTCAGCTTAGCACCGCCGATTGTGGCCTGGCTACTCGACGTTTGACCTGTCGGGTGCAGCTTGGCACATGGAGCTGG
AGCAGAGGAACCATCCCTGCCGTCCACCCCTGCTCGCTTCTCCGGCAAGCTTACCGGGCCGGCGGCCACCGGCCTTACCG
TCCATGACCGCGTTCCTCGGAACCCTGGCAACTCGCCAACTTCTCTGCTCGCTGCATCGCTACCCACAGGCGCTTCATCC
ACGGCTCATCGGCTTGGCTCCGCCGGTTGTGGCATGGCTACAGGACATTTGACCTGTTGGCTGCATCTTAGCACATGGAG
TTGGAGCTGCTGGCTGGATCCTGGTACGTGAG------------------------------------------------
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>SNPs
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------S-------------------------------------------------------------------------
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--S------S--------------------------------------------------------------S-------
-------------------------------------S--------------------------------S---------
----------------------------S------------------------S--------------------------
-----------------------------------S-------S-----S-----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------S---S------SSS-S---S----S--------------------------S----S---S----S----
--------S--S------------------------------S-SS----SSSSSS-SS---SSS---------------
---------------S------------------SSS-----S-S-S-----------S-----SS--------------
------S--SS-----S----S-----------S--------SSS------S-----SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
S--S---------S---S-----S------S----------S---------------S------S---S-S------S-S
------S-----S-----------------------------S-S-----SS----S-------------------S---
-S-------------S--------S---S---S----------------------S--S-S-------------------
-----S--------S-S------------------------S-S----------S-S----S-----S------------
----S----------S---------------S---------------------------------------S--S--S--
-------S--S---------SS--------S---S---------------S------------SS------S------S-
-S-----SSS-SS-S-SSSS---------------------S------------------S--S-------S--------
S----S----------S---S---S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_655
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---------------------------------------------------------------------------CAGGG
GTTCACATACGGTCC-----------------------------------------------------------------
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>reverse_2387
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------------------------------------------------------------------GTTGCACTTGCCTG
TTCCTG--------------------------------------------------------------------------
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