>input_sequence_70262
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-------------------------------------------------------------ATGGAGGAGGAGAGGAAGG
GGTTCCAGCCCCATCTGAT----GGGCCTGGGCGGCGGGGGCAGGCTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAA
GCAGAACTCGTGGTCGCCCGACATCGAGCGCGACGAGGCGTGGGAGCGGCGGCGGCGCGGGATTCTCGGCCGGGGCCGCC
GCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCGACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGC
TTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGCAGGAGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCT
CCTCTACGCCGTCGCCGCCAACGCCGGCGCCGGTGCCGGCGGCTGCGCGGCCGGCCAGAGCCAGTGCTCTTGCGGCGCCT
CCTCGGAGGCCTCCGAGCCGTCGCCCATCGGGAGCCCCCTCTCCATACTCTCCCCAGGTACGCACATTCA----------
-------------------GTTCCGTTTCATCTGATCTGTTGATTAGATGAACAACCTCTGAATTATGAAATAAGTAATC
GATTGTTTCTT----ACCAAACGCGAATAGATTTTGATTGCTGATCCGTCGCGGGTCGGCGCGATTGGAG-TTTTGATCT
GACTTTTTTGGCGGCGGTGCTTCACTTC-----CCTGCAGATGACCCGCCGGAGACGGTGAAGATGAGGCTGAAGCAGTG
GGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGCTCCTGA----------------------------------------
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>chr6D_1_TraesCS6D01G312900
TGACCGTATCGTCAATCAAACTGAAAAGAGCCCAAAGAAAAAGGCCCTGACGAACTAGAC---CCCAAAATTCAGCG---
---GGCAACAGAATCTGAATTCGAGTTGGGTCTCACTA-TTTTCTTTCTGGAAGATTCTCCATGCATGTCAAGGATCGCA
AGGAGTTTTCCAGAAGATTCTCCATGCATATCGAGGATC--GCAGAACCGCGATACTCTTTTGACGAACGTGGATCGATC
AGCGCACATTGTAAAATCTTTGCGCGCAAGCAAATCCCACCGGCCTGACATAATCACGCACGTCGGTTAGGTGGTAATCG
AGTCGGTTGTCGCAAACAGGCGCCCTTCACCCTCTCCACCGTGATGCACCACTAG-------CCGGCCGGCCGGCGGTGG
TTACGTCCGTGTGATGCACTCGCTAA-----CTAAATTATTCCCGAGGCATTACCAACTAATTTGTCCATCCACCACACG
TAATTCTCCCACGCATTTTCGA------------------CGAAATTTTAGCTAACTGACTGACGTGAAAACAAGACACA
GAAGAAC----------------------------------------------------------------CGTGCCGTT
TTACCCGCCGCACGCGAGGATTCAGCGCG--TCCGAGTCCAACCGCGGTT---CAAACAGCCAGCTCAAATGCCGCACCG
TAGC----------AG----------------------------------------------TACAAAACACCTTTTTTT
----CTTTGAGCAAAAGTTAAAATTTGGA-----------------------------------GTTGCATACGGCCGTT
CCCAGTCAGAAAGAATTCCCCCCGGCCCACGTTCCCCGTGACCCCGAATCAATGCCCAATAATGACCCCCGCCCTAGCAC
TTGGAAGAAATCCCACCGTTGGATCC---------------GCAT---CCACGA---GTATATATC------AGCCCGTT
A--CGTCGGCAGCCCGCCCGCCCGGCCGCCAGCACCCGATCCGCTAAGGAGAA--AA-GAAGAAGGCGGCGGAAGGA---
--A-AGGCAGGCCGAGGGAGATAAATTACTCCACCCCGGCCACTCGCCCCCGGCAGCGGCCAGCGGTCCTCC-------T
CGCCCCCATCCAAATCCCACGCCGTCCCCCTCGC-------GGAGG---AGGCCGGCGGCCATGGAGGAGGAGAGGAAGG
GGTTCCAGCCCCATCTGAT----GGGCCTGGGCGGCGGGGGCAGGCTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAA
GCAGAACTCGTGGTCGCCCGACATCGAGCGCGACGAGGCGTGGGAGCGGCGGCGGCGCGGGATTCTCGGCCGGGGCCGCC
GCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCGACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGC
TTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGCAGGAGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCT
CCTCTACGCCGTCGCCGCCAACGCCGGCGCCGGTGCCGGCGGCTGCGCGGCCGGCCAGAGCCAGTGCTCTTGCGGCGCCT
CCTCGGAGGCCTCCGAGCCGTCGCCCATCGGGAGCCCCCTCTCCATACTCTCCCCAGGTACGCACATTCA----------
-------------------GTTCCGTTTCATCTGATCTGTTGATTAGATGAACAACCTCTGAATTATGAAATAAGTAATC
GATTGTTTCTT----ACCAAACGCGAATAGATTTTGATTGCTGATCCGTCGCGGGTCGGCGCGATTGGAG-TTTTGATCT
GACTTTTTTGGCGGCGGTGCTTCACTTC-----CCTGCAGATGACCCGCCGGAGACGGTGAAGATGAGGCTGAAGCAGTG
GGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGCTCCTGAACCAACCAGCCATCAACAACTCCGTGGTACGCCAACGTGA
AAGCTATACCGAATTCAGAGGAGGGACAACCAGC----GACGCAGAAGAAAAGAATCATCCC----TCCCTGGCTCGAGA
TCGAAGAAGCAACCA---ATGATGAGCAAGCAAGCAACGAGAAGAGAATCTATTAGGTGTCGTCGGACGATCGGCCAGCC
GCCTTCCACATCTGCTCTGGCATCGCATCTTGGACTAGCTATAGC-TTAGCCTGCTGCTACTAATCGACTTTCTGTCACA
TGTTTATCGTTGAGCAATTCGAAAACCATACTCCGTAATCCGCGTTACCTCTGTTATAATTAGTTCCT-----CCTCCCC
TCCCCTGATCTTCAGTCGCGGAGGCATTGCTTCCGTTAGTAGTTACCTCCCCTGATTTCGTCGTAGTAATAA-----TTT
CGACATCCCTGTACATTGGCGCATCATCACCATCAATCATCAGCAGGTAGATTAGATTAATTTTAATTCGCGTTCCTGGA
ATTGATA----ATAAACTGTTGGCTGGTAGCAGTTGTTGTTGCTTCTTCCTCTTGCAAAATAATCGATGG-GCGATGGAT
GCTGCCATTGGGTTTGCTCACCAAATCAAT-CCCCCCTCATGTCATTGGCCACCCGATCAAGCAACAACAATCTGAAGCA
GCTCGCCGATCCTTTGCCTCATCTGACGACCAAGCA--------------------------ACGGGGATAGATTTTTTT
TTTT-----------TGTGTGTGTGTGTGAATCATGATCTAGGTTTTTATGACCAGGCGACAGGGTTCTGCGTCGAGATT
-CGAGAAAGGAGGATGACGACACGGATAGATACTGTACCACCATCCTTTCTGCAGTGGTGAAGAGAATTATTTGTTCGGC
GTTCACCCCTCTGCAGAGAAAATTCCCTTTATCGCGAATGATGGGACAGGCTGTGGTCCGCCTGGCCCCGGA-CCCGTAT
GGGAACGGGAGGAAACGAGATGGAGAGCAGGTTTCGTTGGCTGTCCCTCTCTGTCGCCGTCTCGGCA
>chr6A_10
---------CGTCAATCAAATTGGAAAAAA--CAGAGAAAAAAACCCTGACGAACTAGTAGATCCCACAATTCAGCGGCG
CACGGCAACAGAATCCGAATTCGAGTTGGATCTCGCTCTTTTTCCTGCCGGAAGATTCTCGATGCATGTCGAGGATCGC-
AGGAGTTGTCCGGAAGATTCTCCATGCATGTCGAACGATCAGCAAAATTGCGACACTCTTATGAAGAACGTGGATCGATG
GGCACATTAC--AAAATCTTTGCGCGCAAGCAAATCCCACCGGCCTGACATAATCGCGCACGTCGGTTAGGTGGTAATCG
AGTCGGTTGTCGCAAACAGGCGCCCTTCACCCTCTCCACTGTGATGCGCCACTAGCA-----CCGGCCGGCCGGCGGTGG
TTACGTTCGTGTGATGCACTCACCAACTAAGCTGATTTATTCCCGAGGAACTACCAACCAATTCGCCCATCCACGACACG
TAATTCTCCCACGCATTTTCGA------------------CGGGATTTTAGCCAACTGACCGGCGTGAAAACAAGACACG
GAAGAAC----------------------------------------------------------------CGTTCCGTT
TTACCCGCCGCACGCGAGGATTCAGGGGGGATCCGAATCCAACCGCGATGATACAAACAGCCAGCTCAAATGCCGCACCG
TAGTAGTAATACGTAG----------------------------------------------TACAAAACACCTTTTTTT
TCTTCTTTGAGCAAAAGTTCAAAACACTTGTACTGCAAGGGGAACGATGGGGTTAAAAGTTGGGGTTGCATACGGCCGTT
CCCAGTCAGAAAGAATTCCCCCCGGCCCACGTTCCCCGTGACCCCGAATCAATGCCCAATAATGAGCCCCGCCCTAGCAG
CCGGAGGAAATCCCACCGTTCGTTCCGTCCGCCAGGGCCACGCAT---CCACGAGGGGTATATATC------AGCCCGTT
ATGCGTCGGCGGA-CGCCCGCAG-------AGCACCCGATCCGCTAAGGAGAA--AAAGAAGAAGGCGGCGGAAGGCAAG
GCAGAGGCAGGCCGAGGGAGATAAATTACTCCACCCCGGCCACTCGCCCCCGGCAGCGGCCAGCAGTCCTCC-------C
CGCCCCCACCCAAATCCCCCGCCGCCCCCCCTCGCGGAGGAGGAGG---AGGCCGGCGGCCATGGAGGAGGAGAGGAAGG
GGTTCCAGCCCCACCTGAT----GGGCCTGGGCGGCGGGAGCAGGCTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAA
GCAGAACTCGTGGTCGCCCGACATCGAGCGGGACGAGGCGTGGGAGCGGCGGCGGCGCGGGATTCTCGGCAGGGGCCGCC
GCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCGACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGC
TTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGCAGGAGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCT
CCTCTACGCCGTCGCCGCCAACGCCAACGCCGGGGGCTGCGCCGGCGCGGCCAGTCA---CCAGTGCTCCTGCGGCGCCT
CCTCGGAGGCCTCCGAGCCGTCGCCCATCGGGAGCCCCCTCTCCATACTCTCCCCAGGTACGCACATTCAGTTCGGTTTC
AGATTTCAGCAGAGTTCTGGTTCGGTCTCATCTGATCTGTTGATTAGATTAGACGAGCGGTCTCTGAA------------
-----TTTCTCTTCAACCAAACCCGAATAAATTTCGATTGTT---------------AGAGCGATTGGAACTTTTGATCT
GACTTTTC-GGCGGCGGTG-----CTTCCCTTCCCTGCAGATGACCCGCCGGAGACGGTGAAGATGAGGCTGAAGCAGTG
GGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGCTCCTGAACCAAACCACCCAGCCATGAA-------ACGCCAACGTGA
AAGCCATACCGAATTCAGAGGAGGGACAACAACCAGCAGACGCAGAAGAAAAGAATCATCCCCCCATCCCTGCCTCGAGA
TCGAAGAAGCAACCAATGATGATGAGCAAGCAAGCAACGAGAAGAGAATCTACCAGGTGTCGTCGGGCGATCGGCCGGCC
GCCTTCCACATCTGCTCTCGCATCGCATCTTGGACTAGCTATAGCTTTAGCCTGCTGCTGCTAATCGACTTTGTGTCACA
TGTTTATCGTTGAGCAATTCGAAACT-ATACTCCGTAATCCGCACTCCCCCTGTTATAATTAGCTCCTCCTCCCCTCCCC
TCCGCTGATCTTCAGCCGCGGCGGCATTGCTTCCGTTAGTAGTCACCTCCCCTGATTTCGTAGCAGTAATAATTTACTTT
CGACATCTCTGTACATTG-CGCATCATCGCCATCAATCATCAGCAGGTAGATTAGATTAATTTCAATTCGCGTTCGTGGA
ATTGATA----ATAAACTGTTGCCTGGTAGCAGTTGCTGTTGCTTCTTCCCCTTGCAAAATAATTTGACCAGCGATGGGT
GCTGCCATTGGGTTTGCTCACCCAATCAATCCCCCCCTCGTGTCATTGGCCACCCGATCAAGCAACAGCAATCTGAAGCA
GCTCACCGATCCTTTGCCTCATCTGCAATCAG---------CAGATCTGCCGAGACCAAGCAACGGAGATAGATTTTTTT
---------------TGTATGTGTGTGTGATTCATGATCCAGGT---------------ACAGGGTTCTGCATCGAGATT
-CGAG-AAGGAGGATGACGACACGGATAGATACTGTGCCACCATCCTTTCTGCAGCGGTGAGG-----------------
-----------TGCAGAGAAAATTCCCTTTCTCGCGAATGACGGGACAGGCTGTGGTCCGCCCGGCCATGGCCCCCGTAT
GGGAACGGGAGGAAGCGAGATGGAGAGCAGGTTTCGTTGGCTGTCCCTCTCTGTCGTCGTCTCGGCA
>chr6B_75
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---GGCAACTGAATCTGAATTAGAGTCGGATCTCACAATTTTTGTT--CGGAAGATTCTCCATGCGTGTCAAGGAT-GC-
AGGAGTTCTCCGGAAGATTCGCCATGCATGTCGAAGATTGCAAATTTCAATACTAAAAGTCGA------------CGATG
GGCACATTAC--AAAATCTTTGAGCGCAAGCAAATCCCACCGGCCTGACATAATCACGCACGTCGGTTAGGTGGTAATCG
AGTCGGTCGTCGCAAACAGGCGCCCTTCACCCTCTCCACTGTGATGCACCACTAGCACCCGGCCGGCCGGCCGGCGGTGG
TTACATTCGTGTGATGCACTCGCCAA-----CTAAATTATTCCCGAGGAATTAGCAACTAATTTGTCCATCCACCACATG
TAATTTTCCCACACATTTTTGATTATTGCACCACACACGACGAAATTTTAGCCAACTAACTGGCGTGAAAACAAGACACA
GAAGAATCGTTCCGTTTACTCCCCTCAAAAAAAAAAAAGAATCGTTCCGTTTACCCCTCAAAAAAAAAGTTCGTTCCGTT
TTACGCGCCGCACGCGAGAATTCAGCGCG--TCCGAATCCGACTGCGATT---CAAACAGCCAGCTCAAATGCCGCACCG
TAGTACAAAACACTTTTTTTTCGAGCAAAAGTTCAAAACACTTGTACTTTTATTTTTGAGGATACAAAACACTTTTTTTT
TTGAGGATGGATA------CAAAACACTTGTACTGCAAGGGAAACAATGGAGTTAAAT-------TTGCATACGGCCCTT
CTCAGTCAGAATC----CCCCCCGGCCCACGTTCCCCGTGACCCCGAATCAATGCCCAATAATAACCCCCGCCGTAGCAG
TTGGAAGAAATCCAGCCGTTCGATCC---------------GGCCCTGCCACGAGTACTATATAACAGCCCGAGCCCGTT
A--CGTCGGCCGA-CGCCCGCCCGCCCGCCCGCACCCGATCCGCTAAGGAAAAGGAAAGAAGAAGAAGGCGGAAGGCAAG
GCA-AGGCAGGCCGAGGGAGATAAATTACTCCACCCCGGCCACTCGCCCCCGGCAGCAGCCAGCAGTCCTCCTCGGTCCT
CGCCCCCATCCAAATCCCCCGCCGCCCCCCTCGC----GGAGGAGG---AGGCCGGCGGCCATGGAAGAGGAGAGGAAGG
GGTTCCAGCCCCACCTGAT----GGGCCTGGGCGGCGGG---AGGCTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAA
GCAGAACTCGTGGTCGCCCGACATCGAGCGGGACGAGGCGTGGGAGCGGCGGCGGCGCGGGATACTGGCCAGGGGCCGCC
GCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCGACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGC
TTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGGAGGAGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCT
CCTCTACGCCGTCGCCGCCAACGCTAACGCCGGGGGCTGCGCGGCC------------AGCCAGTGCTCCTGCGGCGCCT
CCTCGGAGGCCTCCGAGCCGTCGCCGATCGGGAGCCCCCTCTCCATACTCTCCCCAGGTACGCACATTCA----------
-------------------GTTCCGTTTTCGCTGATCTGTTGATTAGATGACCCGCCTCTGAATTACGAAA----TAATT
GCTTGTTTCTCTTCAACCAAACGCGAGTCAATTCCGATTGCTGATTCGTCGCGGGTCAGCGCGATTGGAG-TTTTGATCT
GACTTTTC-GGCGGCGGCG-----CTTC-----CCTGCAGATGACCCGCCGGAGACGGTGAAGATGAGGCTGAAGCAGTG
GGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGTTCCTG-----AACCAACCAGCCATGAA-------ACACCAACGTGA
AAGCTATACCGAATTCAGAGGAGGGACAACCAGC----GACGCAGAAGGAAAGAATCAACCATCCCTCCCTGCCTCGAGA
TCGAAGT----ACCA---ATGATGAGCAAGCAACCAACGAGAAGAGAATCTA----GTGTCGTCGGACGATCGGCCAGCC
GCCTTCCACATCTGCTCTCGCATCGCATCTTGGACTAGCTATAGC-TTAGCCTGCTGCTACTAATCGACTTTCTGTCACA
TGTTTATCGTTGAGCAACTCGAAAATCATACTCCGTAATTCGCGTTACTTCTGTTAATTAGTTT----------CTCCTC
CCCCCTAATATTCAGTCGCGGAGGCATTGCTTCCGTTAGTAGTCACCTCCCCTGATTTCGTAGTAA--------TAATTT
CGACATCCCTGTACATTGGCGCATCACCACCATCAATCATCAGCAGATAG--TAGATTAATTTCAATTTGCGTCCCGGAA
TATTAGATAATATAAACTGTTGGCTGGTAGCAGTTGCTGTTGCTTCTTCCTCGTGCAAAATAATCGATGT-GCGATTCAT
GCCGCCATCGGGTTTGCTCACCCAATCAATCCTCG-CTCATGTCATTGGCCACCCGATCAAGCAACAGCAATCTGAAGCA
GCTCACCGATCCTTTACCTCATCTGACGACCAAGCAGCAGTCAGATCTGCCGAGACCAAGCAACGGAGATACGGAATAGT
ATTTTTGTGTGTGTGTGTGTTTGTGTGTAATTCATGATCCAGGTTCATCGTCAGGC-CGGCAGGGTTCTGCATCGAGATT
TCGAG-AAGGAGGATGACGACACCGATAGATGCTGTACCACCATCCTTTCTGCAGTGGTGAAGAGAATTATTTGTTCGGC
GTCCACCCCTCTGCAGAGAAAATTCCCTTT--------------------------------------------------
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>chr5D_919
GGCCTGCGAGGAGGAGAGGAAGGGGTTCCAGCCCCATCTGATGGGCCTGGGCGGCCAGCAGTCCTCCTCGC---------
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-----------------------------------------------CCCCGGCAGTGGCCAACGGTCCTCC-------T
CGCCCCCATCCAAATCCCCCGCCGCCCCCCTCGT----GGAGGAGGAGGAGGCTGGCGGCCATGGAGGAGGAGAGGAAGG
GGTTCCAGCCTGCGAGGAGGAGAGGGCCTGGGCGGCGGGGGCAGGTTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAA
GCAGAATTCGTGGTCGCCCGACATCGAGTTGGACGAGGCGTGGGAGCGGCGGCGGCGCGGGATACTGGGCAGGAGCCGCC
GCTCGCCGCTGCAGCACGCGCAGAGCGTCACCGACGACCAGCTCGACAAGCTACGCGGCTCCTTCGATCTGGGCTTCCGC
TTCAACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGTAGGAGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCT
TCTCTACGCCATCGCCGCCAACACCAACGCCGGCGCA------GCC------------AGCCAGTGCTCCTGCAGCACCT
CCTCGGAGGCCTCCGAGCTGTCGCCGATCGGGAGCCCCCTCTCCATACTCTCCC--------------------------
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------------------------CTTC-----CGTGCAGATGACCCGCCGGAGACGGTGAAGATGAGCCTGAAGCAGTG
GGCGCAGGTGGTGGCGCTGTCCATGC------------------------------------------------------
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>SNPs
S-S-S-SSS-----------S--S---S-SS---S-----------------------SS-------S------------
-----------------------------S----------------S-S------------------------------S
-------S---S-----------------S----S---S-----S---S-----------S---S--------------S
S--S--SSSSSS--------------------------------------------------------------------
---------------------------------------S----------------------------------------
------S----------------S------------------------S-------------------------------
----------------------------------------------------S---------S-----------------
--------------------------------------------------------------------------S-----
------------------------------------S----------S--------------------------------
---S----------------------------------------------------------------------------
-------------------S---SSSSSS---------------------------------------------------
-------------------------------------------------------------------------------S
--------------------S-----------------------------------------------------------
----------S-SS----------S---------------------------------------------------S---
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------------------S-----S-------------------------------------------------------
-------------S------------------------------------------------------------------
------------------------------S---------------------------------------S---------
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-------------------------SS------S---S---S-S--------S-S--S-----------S----------
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---------------------------------------------------S-SS-----------S----SSSS----S
-S--------S------------------S----S----------S-----------S----------------------
-------SS----------SSSSS--------------------------------------------------------
---------------------------------------------S-SS--SSSSSSSSSSSSSSSSS------------
------------------------------------------------------------------------S-------
----------------------------------------------------SS--------------------------
------------------S-------------------------------------------------------------
-------------------------S------------------------------------------------------
-------------------------------------------S-----------------S------------------
---------------------------------------------------------------S----------------
------------------------------------S--------------------------------S----------
----------------------S--------------------------------------------S------------
----S-------------------------------------------------------------S-------------
S-----------------------------S--------S-----SS-SSSSSSSSS--------------S--------
-----S--------------------------------------------------------------------------
--S---------------------------S----------S--------------------S----SS--S--------
--------------S-----------------------------------------S----------
>forward_250
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----------------------------------------------------------------------TGGATCGATC
AGCGCACATT----------------------------------------------------------------------
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>reverse_2346
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-------------------------CCATACTCCGTAATCCGCGT-----------------------------------
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