>input_sequence_70208
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----------------------------------------ATGTGTATTTACCTCCCAAACGAAAGCATAACAATCCTCG
CAAAAAAAAAATATGAAAGCATAACACAGGCTACGTGCACGATTCCAGTCGGTCCACGTATCACGCCCCCGTGCACACAA
ATGACAGCCGAAAACCGAGCGAA-CCAACAGCACTTCCCTCCACCACCACCACGAGACATAGATAACGCGCCAGCGACCA
TGCCGCCGCCGCCGTCCGCCCTCACCGCCTCCGCCGCGGCGTCCTCCTTCCTCCGCTCGCTGCCCCCTCCCAACCTCTCC
G---------CCCTCCGGCCTTCCCCATCGCTCAAACGCTCAGCAGGCCACTCCCGCGTGGTCGCGCGGGCCTCTGCGTC
CGGCGCCGC---CGCCGAGGCCGAGACGGTGTTCTTCGATGGCGGCGCGCACTACGGCGACCTGGCGGCGAACCTCGTCC
TCGGGCTGACCCTGCTGTGGCTGCCGCTGACCCTCGCCTCCGTGTCCCGCGCGCTCCTCCTCCGGTACCGCTTCACCTCC
CGCCGCGTGACCGTCATCTCCGGGCTCTCCGGCGACGACCGCACGGACTTCCCCTACTCGTCGGTGAGGGAGGTGGTGGT
CGTGCCGCGGTTCATCGGCGAGTGGGGCGACATCGTCATCACGCTCAAGGACGGCACCAAGGTCGACCTCAGGAGCGTGC
CCAGGTTCCGCGAGGTCGCCGACTACTGCCGCAAGATGGCCGCCGCCGAGGGCGGGCTCGGGACCCGGTGA---------
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>chr4D_1_TraesCS4D01G286200
ATGATTAATATTTTTGTTCACGCAATTAGTGCATGGAAACTCCCTTCTCTTTCCACCCCACATAAAGGGCATGTGCTTTG
TTTTGAAATGTGGCGATGCACTTTGCACTGATTTGTTGGTAACGCACCAGCCGCCACCTTCCACGCCATGATACACATCT
TCAGCGGTACGTTAGCTCGCCAAATGCCTCTCCATAATTACATGTTTAGCATTTTTCAAAATACATCATACACATTATCC
ATTTCAGGTATACATCTAAAAACATTTTCATACATGTTTAATATTTTTTAAACATAAAATTATCATCTTTTTTTCAAATA
CAAGTTTTTCAAAAAAAATCATATACGCGTTAAAAAATTGGAAGGTAAGATTCTTTTATACTATGCGAAAAATTTTGTAC
ATTGCATAAACATTTTTGAAAGTGTCATGAACAATTTTTTAAATGCGTGAACATTTTTTACAATGCAACGTATATTTTTT
TAATTACACAAATATGTTTTACAATGTTTAAACATTTTTTTGAATCTCACTTACCTTTTTTGTAACACATAAACAATTTT
TAAATGTCGTAAACACAAGAATATAAGTTGTTTCCTTACATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAGACATTT
TAAATGAACTACCACATACGGATGTATGTAGACATATTTTATAGCGTAGATTCACTCATTTTGCTCCGTATGTAGTCACT
TGTTGAAATATCTAAAAAGACAAATATTTAGAAACGAAGTGAGTAGAACACAAGAAGAAATAACGACATGAAAAATGTTT
ATCTCTTCTAGACATGTTGTGTTGTCGTGGCTTGGTGTTAATTTTAGTTAAAGTTGACCATCAGGCCACGTAGGCCACGG
ATACACCCATATATGCGAAATGTGGCTGTATATGAATGCTCGTGCAGATTTGATGATCAAAACATGAATTGTAGAAGTTT
ATACATCAAACTGACCGTCGGAGGCAAGTTTTATGACTCCATGTGTATTTACCTCCCAAACGAAAGCATAACAATCCTCG
CAAAAAAAAAATATGAAAGCATAACACAGGCTACGTGCACGATTCCAGTCGGTCCACGTATCACGCCCCCGTGCACACAA
ATGACAGCCGAAAACCGAGCGAA-CCAACAGCACTTCCCTCCACCACCACCACGAGACATAGATAACGCGCCAGCGACCA
TGCCGCCGCCGCCGTCCGCCCTCACCGCCTCCGCCGCGGCGTCCTCCTTCCTCCGCTCGCTGCCCCCTCCCAACCTCTCC
G---------CCCTCCGGCCTTCCCCATCGCTCAAACGCTCAGCAGGCCACTCCCGCGTGGTCGCGCGGGCCTCTGCGTC
CGGCGCCGC---CGCCGAGGCCGAGACGGTGTTCTTCGATGGCGGCGCGCACTACGGCGACCTGGCGGCGAACCTCGTCC
TCGGGCTGACCCTGCTGTGGCTGCCGCTGACCCTCGCCTCCGTGTCCCGCGCGCTCCTCCTCCGGTACCGCTTCACCTCC
CGCCGCGTGACCGTCATCTCCGGGCTCTCCGGCGACGACCGCACGGACTTCCCCTACTCGTCGGTGAGGGAGGTGGTGGT
CGTGCCGCGGTTCATCGGCGAGTGGGGCGACATCGTCATCACGCTCAAGGACGGCACCAAGGTCGACCTCAGGAGCGTGC
CCAGGTTCCGCGAGGTCGCCGACTACTGCCGCAAGATGGCCGCCGCCGAGGGCGGGCTCGGGACCCGGTGAAGGCGGCGA
GGAATGTGCC----GTGTTCAGCTGTGCAGAGATTTTCTTCTTTCTTGCTCGCTTGTTTGTCTGTTGTAAGTCGTGATGT
GAAGACTGAAAATTCTGACGAAAGCTCGATCAGTAATATGAGC---TGGTGTTCATCTTGCTACTGTAATTTTCAGATCA
TCCTTGCTACTGTAATTACTACAACTGCAAGTATCG--------------------------------------------
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-----------------------------------------TTTTCTGGAGATATTTACGACTCTTGTTTGCAGTAGGTG
GGACGCGGAGTTTCTGCAAAATCAAAACTAAATAAAAAATATTCAAAAAATCCAATTTTTTTTGAAGAAACATTGACAAA
AGTTCTAAGTGCTTGCAAAAATTCGTCATGAAATCACATTCCTAGAAGGCATGGCAAAAAAGACAAAAACAGTACTCTGA
AAAAGCTACTTTCAAAAGCATTTTGAA-----------------------------------------------------
------------------------------------------------------------------GCACTGAATTTGTT
TTTTTTTCCACGCCTTACAGGAATGTGATTTCATGATGAATTTTTGCAGGCACTTAGAACTTTTGTCAATGTTTCTCTCA
AAAAATTGAAATTTTTTGAATTTTTTTCAATTCTTTTTCGATTTTACTGTTCACCGAGCTCAAATGAGCTCGGGAGCAGA
AAGGCACTTTCGCAGTGACAATCTCATGAGGATCATTCGGAGGTGCCTGCATTCTTTCTATGAGAGAAAGAGGTGCCT--
---------------GAAACCCCTGAGTTCAGAATTTCAGATACACGGGAAAGTGCCATGGGCTATGGGAATGTCATCAT
CCATTGAGATTATA---ATGGGCCGGGCCATAAAACGGTGATCACAGAGAGAGATGGACTTTTGTTTTCTTGTTGAGCAC
CCGTCTCGTCTGTGTGTGTGCGCACTTTACTTCCCTTTTTCCGCTAAAAATGACTTTTTTTTTCAAAAGCAGGCTTAGGT
TTACCTGGGAGACTTGCGTGAGATCTCACATTTAGGTGAGATCGTGAGATCAACCCCCAAAATCATATGTAGACATTTCA
AAAAAATCTAAAATTATTTGAC
>chr4B_1045
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----AAAAAAAAGGGAA--CATAACAAA-GCTACGTGCACGATTCCAGTCGGTCCACGTTTCACGCCCCCGTGCACACAA
ATGACTACCGAAAACCAAGCGAACCCAACAACACTTCCCTCCACCACCACCACGAGACGGAGATAACGCGCCAGTGACCA
TGCCGCCGCCGCCCTCCGCCCTCACCGCCTCCGCCGCCGCGTCCTCCTTCCTACGCTCGCTACCTCCTCCTAACCTCTCC
GCCCACGCCACCCTCCGGCCTTTCCCATCCCTCAGACGCTCAGCAGGCCACTCCCGAGTGGTCGCGCGAGCCTCTGCGTC
AGGCGCAGC---CGCCGAGGCTGAGACGGTGTTCTTCGACGGCGGCGCGCACTACGGCGACCTTGCGGCGAACCTCGTCC
TCGGGCTGACCCTGCTGTGGCTGCCGCTGACCCTCGCTTCCGTGTCCCGTGCGCTCCTCCTCCGGTACCGCTTCACCTCC
CGCCGCGTGACCGTCATCTCCGGGCTCTCCGGCGACGACCGCACGGACTTCCCCTACTCGTCGGTCAGGGAGGTGGTGGT
CGTGCCGCGGTTCATCGGCGAGTGGGGCGACATCGTCATCACGCTCAAGGACGGCACCAAGGTCGACCTCAGGAGCGTGC
CCAGGTTCCGCGAGGTCGCCGACTACTGCCGCAAAATGGCCGCCGCCGAGGGCGGGCTCGGGACCCGGTGATGGCGGCGA
GGAATCTGCTGTTCCTGTTGTGCAGTTTTTCTT-----TTCTCTCGTGCTCGATTGTTTGTCTGTTGTAAATCGTAATGT
GAAGACTGAAAATTCTGACGGAAGCTGGATCGGTAATACGAGCA--TGTTGTTCATCTTGCTACTGTGTTTTT-AGATCA
TCCTCGCTACTGTGGTTACTACAGCTGCGAGTATCATTTTCTGCTGATATTTAAGATTCTTGTTTTGAGTAGGATTGCTG
ACCAATGGGAAGACTGAAAATTCTGACGAAAGCTCGATCAGTAATATGAGCT----------------------------
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>chr4A_1055
GAAGGC--------------------------------------------------------------------------
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---------------------TAACAGAGGCTACGTGCACGATTCCAGTCGGTCCACGTATCACGCCCCAGTGCACACAA
ATGACTACCGAAAACCGAGCGAACCCAACAGCACTTCCCTCCACCACCACCACGAGACATAGATAACGCGCCAGCGACCA
TGCCGCCTCCGCCGTCCGCCCTCACCGCCTCCGCCGCGGCGTCCTCCTTCCTCCGCTCGCTGCCTCCTCCGAACCTCCCC
GCCCACGCCACCCTCCGACCAAACCCATCCCTCAGACGCTCAGCAGGCCACTCCCGCGTGGTCGCGCGGGCCTCTGCGTC
CGGCGCCGCCGGCGCCGAGGCCGAGACGGTGTTCTTCGACGGCGGCGCGCACTACGGCGACCTGGCGGCGAACCTCGTCC
TCGGCCTGACCCTGCTGTGGTTGCCGCTGACCCTCGCCTCCGTGTCCCGCGCGCTCCTCCTCCGGTACCGCTTCACCTCC
CGCCGCGTGACCGTCATCTCCGGGCTCTCCGGCGACGACCGCACGGACTTCCCCTACTCGTCGGTGAGGGAGGTGGTGGT
CGTGCCGCGGTTCATCGGCGAGTGGGGCGACATCGTCATCACGCTCAAGGACGGCACCAAGGTCGACCTCCGGAGCGTGC
CCAGGTTCCGCGAGGTCGCCGACTACTGCCGCAAAATGGCCGCCGCCGAGGGCGGGCTCGTGGCCCGGTGAGGGCGGCGA
GCAAGGCATCTGCTGTGTTCAGCCGTGGAGAGATTTTCCTTTTTCTTGCTCGGTTGTTTGTCTGTTGTAAGTCGTGATGT
GAAGACTGGAACTTCTGACGGAAGCTCGATCAGGAATACGAGCTGGTGTTCTTCATCTTGCTACTGTATTTTT-AGATCA
TCCTTGCTACTGTGGTTACTACAGCTGCGAGTACCATTTTCTGCTGATATTTAAGACTCTTGTTTTGAGTAGGTTTGCTG
AGCATTGTGAAGACTGGAAATTCTGAAGAAAGCTCGATCAGTAATATGAGCTGGTGTTCATCTTGCTACTGTGGTTTTCA
GATCATTCTTGCTACTGTAATTACTACAACTTCAAGTATCATTTTCTGGAGATATTTAGGACTCTTGTTTGCAGTAGGAA
GTACGAGTAAAAAACTGCTGCAGGTCTCGTATATCTCGTTTTTGCTACCAGGACGTGGCTGCGATTTGAAGATCTTGCCG
AATGACAACAGGCGTGCATTGCCCTTCGTTCCCTGTTTCAGTCTCCGGAGTCATGTTGGTAGGCCTTTTGTGATCTACAG
GCGTTAGCCCTGGGCCTGTTGATGTCGTCTGTAATATGTGCGATACTTGATTAGATGCTCCTAGTGCGGTTTTGGATGAC
AACAGGTTTTCGCCCCATGATTTGATGTTCCTGATGATAGGCACAGATAGTGGGTTTCCTGGTGTTGCTCTGAACTTGCT
TTTCCTCTTTCCCTAGTCCTGCTAGTTTCAGTTCCTGAGACATTGTATTTCCGTTATGAAAGTAACGGAAAGGGGGGAAG
CCGGTTCGAAAAAAGTAGGATTG---------------------------------------------------------
--------------GTGACCATCTCATGATGATCATTTGGAGGTGCCTGCATTCTTTCTATGAGAGAAAGAGGTGCCTGC
GTTCAGAATGTTTTTGAAACCCCTGAGTTCAGAATTTCAGATACACGGGAAAGTGCCGTGGGCTATGGGAATGTCATCAT
CCATTGAGATTATATAAATGGGCCGGGCCATAAAACTGTGATCACAGAGAGAAATGGACTTCTGTTTTCTTGTTGAGCAC
CCGTCTCGTCTGTGTGTG--------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------SSS---SS-------S-----------------------------------------------------
-----SS-------------------------------------------------------------------------
----------------------------------------------------------------S-----S---------
----------------------S------S----S---------------------------------------------
---------------------------------------S----------------------------------------
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----------------------------------S------------------------------------S--------
-----------------------S---S------------------------S---------------------------
--------------------S-----------------S---------S-------------------S----S------
-------------SS--------S----S------S--------------------------------------------
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----------------------------------------------------------S-------------------SS
-S---S-S-SSSSSSSSSSSSSSSSSS-SS-SSSSSSSS-S--SSS-SS-SSSSS-SSS-SSSSSSSS--S--SSSSSSS
-S-SSS--SS-SSSSSS-SSSSS-S--S-SSSS-SSSSSSSSSSSSS-SSSSSSSSSSSS--S-SSSSSSS-SS--SSSS
SSSSSSSS-S-SSSSSS-SSSS-SSSS-----------------------------------------------------
--------------------------------------------------------------------S-----S---S-
---SS-SSSS-S-SSSS-SS-SSS--SSSSSSSSSSSSS-SS--SSSSSS-SS---SS-SSS-SSSSS-SSSSSSSSSSS
SSSSS-S----SSSS-S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----S---------S-------S------------------------------------------
---------------------------------------------------------S----------------------
------------------------------------S---------------S--------S------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_872
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----------------------------------------------------GTTGACCATCAGGCCACGTA--------
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>reverse_2634
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-------------------------------------------------------------------------GAGCAGA
AAGGCACTTTCGC-------------------------------------------------------------------
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