>input_sequence_70206
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--------------------------------------------------------------------ATGCGGCCTGGG
AGG---------GCACGCCGGTCCACGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCTCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACAGTTCCTCAGATTACG
ATTACGACCGAGGAAGAGGAAGAGCAAGAGGAATAGGAGGAAGAAGATAT-AATATGGCCCTGGGAGACGACTCTCCGGC
CTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCTTCCCGTCCCCTAATTCG--TAGCTTGATCTGCTGCGCCC
TTGGTTC------TTCTAGCTAGCAGATAGATGATCACCAGCATCA-----------------------------GCATG
CACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTTAAGTGATTAAGGTGGGC--TTTAATTTGCAGGTGCACCAT
CTGATAGAGAAGTGCATGACGTTCAGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTAGGCCGGCGTCTCAAATCAATTACTGCTTCCTCTGATCAGCAGGAATATATCTATCTGTAC
TGACGCTGAGTGGGCGTGCTTGCAGTGTGGAAAGAGCTGGAGAAGGAGAACAAGGAGTTCTTCGACAGCTACAACAAGCA
GTTGAGATCAGA------AGGCCGAAGC---AGCAGCAACAGCAGCAGCGACAGCAGCTCCTAA----------------
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>chr4D_1_TraesCS4D01G203800
TGCTCGCACAGTTCTCTAGTGCAAGAAAAAGACTTGGAGCAGTAGACCACAGACGGGCGGTGTATGCGTACAGCTTTCTG
CTCTCTCTCTCTCTCCCCCAAGCGGCAAAGCGGGCGTGACTGCGAGTCTGCCCGCGGCAGCACTAGCAGCCACTCCGAGT
CGGGACCAATTGATTTGAATGAAAATTTTGGGGCCGACGGATCTGCGCGGGAGGCAGCGTGCATGCGTGACAGCTACCCC
GCCATGT-AAGCCCCCAAGCGCCTGCCCGCGCACCACGCAAGCATTTTGTCTGTCCGGTTCGTCCCGGGCCCCGTCGCAC
GCCCCGCTCCATGCCTCCATCCATGCAATGGAATGCA-----TGTTGTACACCGGGAGACGGCGGGATCCACCGTAAGCT
GTCGCCTCTAGCGCTAGCCATGACAGCAAGCTTCGTGATGA-----GTGAGTAGTATGATTACTTGATTAGTTGCGATGC
TCACTGCT-----CTATGGGGAGGAAGTACACAGTGAACCGTCGTCACATCGCCATGACACCGAATTGACCGCGCAACAA
ACCCCGACCGTGCGGGACGTCTACTACAACACCACACTATTTGCCAGTGATTGATTCTGCACTTAAGGATTCTCAAG---
--CGAGCCGGCGAAGGAAACAGCACCGGGGCCAGAA---AGAATGAAAGAAAAAGAGCAGCGTGGAATCCCGAATCCCCA
CGTTGGCCGTCGCGACGTGGCCGGCTGGGCCAGGTGGCACGTGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTAC
GCCCGGACCCTTCTTCGGGCATGGCATGGACGACCTGGAAGC----ACCCGAGCCTACGACGGGATAGGGATTAGATATT
TGCCACAGCATCTCCACATCCCTTTCCGATCTCTCGCACGGCGAATCGCCTCTCCTCCAATCCCCTGCCCGCGCCCACGT
GAACGCACCCGCCCGCATTTGCGGCCCCAGGCTCCGCGCGCCACGTCCATGCGCCGGCTGGCGGAGCCATGCGGCCTGGG
AGG---------GCACGCCGGTCCACGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCTCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACAGTTCCTCAGATTACG
ATTACGACCGAGGAAGAGGAAGAGCAAGAGGAATAGGAGGAAGAAGATAT-AATATGGCCCTGGGAGACGACTCTCCGGC
CTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCTTCCCGTCCCCTAATTCG--TAGCTTGATCTGCTGCGCCC
TTGGTTC------TTCTAGCTAGCAGATAGATGATCACCAGCATCA-----------------------------GCATG
CACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTTAAGTGATTAAGGTGGGC--TTTAATTTGCAGGTGCACCAT
CTGATAGAGAAGTGCATGACGTTCAGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTAGGCCGGCGTCTCAAATCAATTACTGCTTCCTCTGATCAGCAGGAATATATCTATCTGTAC
TGACGCTGAGTGGGCGTGCTTGCAGTGTGGAAAGAGCTGGAGAAGGAGAACAAGGAGTTCTTCGACAGCTACAACAAGCA
GTTGAGATCAGA------AGGCCGAAGC---AGCAGCAACAGCAGCAGCGACAGCAGCTCCTAATGACCAACAGGAGATG
CGTGCTGCTTGCTCTAGATGTTGGCCGTTCTGCACTTAGTAGAACGAATAATTAGAAGATCGACGGCGCGGGAGGTCAGC
TAACGCGACGCGATCTATGTGTGGTGGTGCATGTACAG----------------------GGTCAGGTTGGCAGGTATCA
AAAGCCAGCTCGTACTGTTGCGATATTCTTCAGATGGAGTACGTACTAATTGTACTCATCATGTGTCCCATCTTCTCTC-
---------------------------------------------CCACTGTGTGCTAATGGTCCAAGCAACGCATTACG
CCACGCAAAAAATGCTCTGCTCCTGCAATCGGATTCTCATTTTTTTTCCCCTCATAACGAACAAAAAGAAAAAGCGCGGT
AGTCCCGCACAGAG-AAACACTGTTCTCCCCTAACCAGAGATACTAGTACACATGATCACGGGAAAATGGAGGAAACATA
CTACTGTTTATGCTCAGCGAGAAGTAGGTGTACACGAACGTGCTCCGTGACGGGATGGGACATCTTGTCTTTGGCTCGCT
CAAGCCAGCATGGAACGGTCCAAACAAGGAAAGTTTGCATCGGCGCCATACGTGTGTGCAGTGCCGTGGAATCGGTGATG
GGATTCTGC---ACGGGACAA-----GGACCCCTCCCCTCTTCTTTCCTCTGATTTTGACGTGACAAGCAACAACTTGGC
GAGGCAAAATGGGCAAAAATAACCTTGAAACGCCACTAATTCACAATGGGTGAA-----------ATTTTTTCACCAGCT
GACCCTTTTATGTAGCGTCCGACAGGTCGGCGCTACACTAGACTGAATAGCTGCTGATACACGCCTGA-----------C
GGTGTCGCATCCTGAGGCTGGGCAAGGGCCCACCTCACCTCTAGTTGTGCAGCGCCTAGCCGACATGCGCTACACTACCT
TCTGTAGCGCCTAGACGAAAGACGCTACACGTGCACTTACTAACCGC-----CGCGGGCTGGCCCTCCCTAGCCTTGCCC
CCACACAAACCCCAAGAGCATTTGAATAGAGGAGTCGCGATTCCCTCT
>chr4B_10
---------AGTTCTCTAGTGCAAGAAAAAGACTTGTAGCAGTAGACCGCAGGCGGCCGGTCTA-GCGTACAGCCTTCTG
CTCTCTCTCTCTCTGCCCCCAAGCGAGCCGA--GCGTGACCGCGAGTCTGCCCGCGGCAGCACTAGCAGCCACTCCGAAT
CGGGGCCAATTGATTTGAATGAAAATTTTGGGGCCGACGGATCCGCGCGGGAGGCAGCGTGCATGCGTGACAGCTACCCC
GCCATGTAAAGCCCC-AAGCACCGGCCCGCGCACCACGCAAGCATTTTGTGCGTCCGGTTCGTCCTGGG-CCCGTCGCAC
GCCCCGCTCCATCCATGC-------------AATGCA-----TGTTGTACACCTGGAGACGGCGGGATCCACCGTACGCT
GTCGCTTCAAGCGCTGGCCATTACAGCAAGCTA-------------------------------------------ATGC
TCACTGCT-----C-----GGAGGAAGTACACAGTGAACCGTCGTCACATCGGCATGACACTGAATTGACCGCGCAACAA
ACCCCGACCGTACGGGACGTCTACTACAACACCACACTATTTGCCAGTGATTGAATTTGCACTTGAGGATCCTCAAG---
--TGAGCCGGCGAGGGGAACAGCACAGGGGCC---A---AGAAAGAAAGAAAAAGAGCGGCGTGGAATCCCGAATCCCCA
CGTTGGCCGTCGCGACGTGGCCGGCGGGGCCAGGTGGCACGTGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTAC
GCCCGGACCCTTCTTCAGGCATGGCATGGACGACCTGGAAGC----AGCCGAGCCTACGACGGGATAGGGATTAGATATT
TGCCACAGCATCTCCACATCCCTTTCCGATCTCTCGCACGGCGAATCGCCTCTCCTCCAATCCCCTGCCCGCGCCCACGT
GAACGCACCCGCCCGCCTTTACGGCCCCCGCATCCGCGCGCCACGTCCATGCGCCGGCTGGCTGAGCCACGTCCCCTAGG
AGG---------GCACGCCGGTCCACGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACAGTTCCTCAGATTACG
ATTACGATCGAGGAAGAGGAAGAGCAAGAGGAATAGCAGGAAGAAGATTACAATATGGCCCTGGGAGACGACTCTCCGGC
ATCCTACATCCGCATGGTATGTACTAGTACAATCGCCTTCTTCCCATCCTTCAAACTGTATACCTTTATCTGCTGCTC--
-----TC------TTCGAGCTAGGAGATAGATGATCACCAGCTACGCTTTTCGATCGGGTCACCTCACCGGGCTTGCATG
CGCAGGACATCGACTTCTCACGTAGACATCAGAATTGGTTAACTAATTAAGGTGGGGTTTT-AATTTGCAGGTGCACCAT
CTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTCGGCCG--GTCTCAAATCAATTACTGCTCCCTCTGATCAGCAGGAATATATTTATCTGTAC
TGACGCTGAGTTGGCGTGCTTGCAGTGTGGAAAGAGTTGGAGAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCA
GTTGAGATCAGA------AAAGGAAGGCCGAAGCAGCAGCAGCAGCAGCGACAGCAGCTCCTAATGACCAACAGCAGATG
CGTGCCGCTTGCTCTAGATGTTGGCCATTCTGCACTTAGTAGAACGAATAATTAGAAGACCGATGGCGCGGGAGGTCAGC
TAACGCGACGCGATCTATGTGTGGTGGTGCATGTACAGCCGTACAGGGTCGGGTTGGCAGGA--------------ATCA
AAAGCCAGCTCGTACTGTTGCGATATTCTTCAGATG-------TACTAATTGTACTCGTCATGTGTCCCGTCTTCTCTC-
---------------------------------------------CCACCGTGTGCTAATGGTCCAAGCAACGTAATATG
GCACGCAAAAAATGCTCTGCTCCTGCAATCGGATTCTCACTTTTTTTCTTCTCATAACGAACAAAAAGAAGAA-CGCGGT
AGTCCTGCACAGAG-AAACACTGTTCTCCCCTAACCAGAGATACTAGTACACATGATCACGGGAAAATGGAGGAACCATA
TAC--------GCTCGGCGAGAAGTAGGTGTACACGAACGTGCTCCGTGACGGGATGGGACATCTTGTCTTTGGCTCGCT
CAAGCCAGCATGGAACGGTCCAAACAAGGAAAGTTTGCATCGGCGCCATACGTGTGTGCAGTGCCGTGGAATCGGTGATG
GGATTCTGC---ACGGGACAAGGACCGGACCCCTCCCCTCTTCTTTCCTCTGATTTTGACGTGACAAGCAACAACTTCGC
GAGGCAAAATGGGCAAAAATAACCTCGAAACGCCACTAATTCACAATGGGTGAAT-----------TTTTTTCACCAGTT
GACCCTTTTGTGTAGCGGACC-----------CTACACTACACTGAGTAGCGGCTGATTAATAGGTGCGACACGTCTGGC
GGTGTGGCACCCTAAGGCTGGGCAAGGGCCCACCTCACC---------------TCTAGCCGACATGCGCTACACTA---
---------CCTAGACGAAAGGCGCTGCACGCGCACTTACTAACCGCACTGCCGCGGGCCGGCCCTCCCTAGCCCAGCCC
CGACACAAACCCCATGAGCATTTGAACAGAGGAGTCGCGATTCCCTCT
>chr4A_111
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----------------------------CGA--GCGTGACTGCAAGTCTGCCCGCGGCAGCACTAGCAGCCACTCCGAAC
CGGGACCAATTGATTTGAATGAAAATTTTGGGGCCGACGGATCTGCGCGGGAGGCAGCGTGCATGCGTGACAGCTACCCC
GCCATGT-AAGCCCC-AAGCCCCTGCCCGCGCACCACGCAAGCATTTTGTCTGTCCGATTCGTCCTGGGCCCCGTCGCAC
GCCCCGCTCCATCCATGC-------------AATGCAATGCATGTTGTGCACCGGGAGACGGCGGGATCCACCGTACGCT
GTCGCCTCTAGCGCTAGCCATCACAGCAACTCAGCAAGCTTCGTGAGTGAGTAGTATGATTGCTTGATTGGTTGCGATGC
TCACTGCTCTCTGC-----GGTGGAAGTACACAGTGAACCGTCGTCACATCGCCATGACACCGAATTGACCGCGCAACAA
ACCCCGACCGTGCGGGACGTCCACTACAACACCACACTATTTGCCAGTGACTGAATCTGCACTTGAGGATCCTCAGGCGA
GCCGAGCCGGCGAGGGGAACAGCACAGGGGCC---AGAAAGAATGAAAGAAAAAGAGCGGCGTGGAATCCGGAATCCCCA
CGTTGGCCGTCGCGACGTGGCCGGCGGGGCCAGGTGGCACGTGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTAC
GCCCGGACCCTTCTTCGGGCATGGCATGGACGACCTGGAAGCGGACAGCCGAGCCTACGACGGGATAGGGATGAGATATT
TGCCACACCATCTCCACATCCCTTTCCGATCTCTCGCACGGCGAATCGCCTCTCCTCCAATCCCCTGCCGGCGCCCACGT
GAACGCACCCGCCCGCATTTGCGGCCCCAGCCTCCGCGCGCCACGTCCATACGCCGGCCCGCTGAGTCACGCCGCCGGGG
GGAAGAAACGCCGCACGCCGGTCCATGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACGGTTCCTCAGATTACG
ACTACGATCGAGGAAGAGGAAGAAGA----------------------TACAATATGGCCCTGGGAGACGACTCTCCGGC
CTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCTTCCCATCCCCTAATTCG--TACCTTGGTCTGCTGCTCCC
TTGGTTCTTCTAGTTCTAGCTAGCAGATAGATGATCACCAGCATCA-----------------------------GCATG
CACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTCAACTAATTAAGGTGGGATTTTTAATTTGCAGGTTCACCAT
CTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTCGGTC--CGTCTCAAATCAGTTAC---TTCCTCTGATCAGCAGGAATACACTTATCTGTAC
TGACGCTGAGTTGGCGTGCTTGCAGTATGGAAAGAGCTGGAGAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCA
GTTGAGATCAGAAAAGGGAGGCCGAAGC---AGCTGCAGCAGCAGCAGCGACAGCAGCTCCTAATGATCAACAGGAGATG
CGTGCTGCT-----TAGATGTTAGCCATTCTGCACTTAGTAGAACGAATAATTAGAAGATCGATGGGGCGGGAAGTCAGC
TAACGCGACACGATCTATGTGTGCTGGTGCATGTACAG----------------------GA--------------ATCA
CAAGCCATCTCGTACTGTTGCCATATTCTTCAGATG----------TAATTGTACTCATCATGTATCCATCTCCCACAGC
TCTCGGTTCAGACTTTTCATACCTCTGTGGAGATTACCTACGGCACCACTGTGTGCTAATCGTCCAAGCAAAGCTTTATT
CTGTAATTGGATCTCCGTC--------------------------TTCTCTTTCTAACGAGCAAAAAAAAAAA---CGGT
TGTCCTGCACAGAAAAAACACTGTTCTCCCCTAACCAGAGATACTAGTACACATGTTCACGGGAAAACGAAGGAAACATG
CTA-----TATGCTCAGCGAGAAGTTGGTGTACACGAACGTGCTCCGTGACGGGATGGGACATCTTGTCGTTGGGTCGCT
GAAGCCAGCGTGGAACGGTCCAAACAAGGAAAGTTTGCACCGGCGCCATACGTGTGTGCAGTGCCGTGGAATCGGTGATG
GGATTCTGCTGCACGGGACAA-----GGACCCCTCGCCTCTTCTTTCCTCTGATTTTGACGTGACAAGCAACAACTTCGC
GAGGCAAAATGGGCAAAAATAACCTCGAAACGCCACTAATTCACAAAGGGTGAAAAAAGGGTGAAATTTTTTCACCCAAC
TAATCCTTT----------------------------------TGTGTAGTGGCTGATTAATAGGTGCTACACGCCT-GC
GGTGTGGCACCCTGAGGCTCGGCAAGGGCCCACCTCAC-TCTAGTTGTACAACGTCTAGCCGACATGCGCTACACTGCTT
TGTGTAGCGCCTAGACAAAAGACGCTACACGTGCACTTACTAACCGCCAC------GGCCGGTCCTCCCTAGCCTAGTCC
CCACACAAACTTCAAGAGCATTTGAACAGAGGACGTC-----------
>SNPs
SSSSSSSSS---------------------------S-----------S---S---S----S--S---------S-----
--------------S----S-SSS-SSSS-SSS---------------------------------------------S-
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---------------S----S--------------------------------------------S--------------
------------S-S-S-SSSSSSSSSSSSS---------------------------------------------S---
---------------------S----------SSSSSSSSS--------------------S-------S----------
--------------SSSSS-------------------------------------------------------------
------------------------------------------------------S---------S-----S---------
-------------S--S--------S------SSS-----------------------S---------------------
-------------------------S------------------------------------------------------
-----------------------------------------------S--------------------------------
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------------------------------S-------------------------------S------S--S-------
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-----------------S--------------------------------------------------------------
-------S----------------------------S-----------SS------------------------------
---------------------------------------------S----------------S-------------S---
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------------------------------------------S-S-----------S-----------------------
------------------------S-------------------------------------------------------
-------------------S-----S--------------------------------------------S---------
-----------S--------------------------------------------------------S-----------
--------------------------------------S-----------------------------------------
--------------------------S------------------------------------S----------------
-------------------------------------------------------------SSSSSSSSSSSSSSS----
------------------------------------SSSSSSS--------------------------S----------
------------------------------------------------------------------------------S-
---------------------------------------S--------S------------------------S------
-----S--------------------------------------------------------------------------
---SSSSS------------------------------------------------------------------------
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-----------------------------------------------------------------------------S--
-------------------------S----------------------------------------------------S-
---------S-------SS-SSSSSSSSSSSS--------S-----S----S------SS-SSSS--S------------
-----S---S--------------------------------------S--S--S-----------------------S-
-S---------------------------------------------------------S---------------S----
--------------------------S---------------------
>forward_103
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---TCTCTCTCTCTCCCCCAAGC---------------------------------------------------------
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>reverse_1990
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---------------------------------------------------------------------GGCAGGTATCA
AAAGCCAGC-----------------------------------------------------------------------
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