>input_sequence_70188
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--------------------------------------------------------ATGGCCACCTCGGTGCTCCACCAC
CTCGCCGACGTGGCCCAGAACAAGCGCAACCCGATCCTTTCGCTGCCGTCGTGCGCCACACGCCTGCGCATCAATCCTGC
CTGCTTCGCGATGCCGGAGGACGCCGGCGCCAGGGACGCGAAGCGGAGGCACCGTTGCCACGACGAGCCGCCACGTTCGC
CAGACGTCAAGCGCCGCCGACGTGACGACGCGCGCGTCGTGCCCCCGCACACCTCGAGGAAGAGGGAGACCGTGAAGCAC
CACCGCGACGAGGAATCGCCAGAATCCAAGCGCCGACGACACTATGATGACCGGAGGGGTACGTCTTCATGGTCGCGCAG
CTCTTTCGGCAGCACGAGGCTGGCGACGGGCGGCGAGGTTCACGCGGCCAGCCGCGAAGACCCCCGCCGCACGGCCAAGA
ACCTGGAGCGCGAGCGCGCGCGGGAGACCACCAGGGGAAGCAGCAGCTCGCGGTTTGAGCCGAGGGCTATGCCGGATCCC
TGCGCCGCGCAAGGGCAACGACACCTGCCGGTCGCGGCTATCGCAAGACCACGTGCCGTTTCTCTTGACGTTCGGCCGCC
ACAGGAGTACACGGAGAGTTTCGAGGAGGCCAAGCTGCGAAGGATGGAGATCCAGCGGAAGAGGGAGGAGGCCCGCCGGG
AGATGGACAAGGTGGTGCAGGCCGTCTACTTCAACGATCCATACATATCTCCCCTGGATATGTTCAAGCGCTGA------
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>chr2D_1_TraesCS2D01G200000
TTTATATTTAGAAACGAAGGGAGTATCATTCAACCGAATCTGACAAAAAGAATATGGATCAACCTAATTCCACTTTTCTG
AAAACCTCTGTCACTACACCTAAAAATTTGATGGTGTGCCTTGAGCCCTTGACCTCGCACCAACACACACCATCTAATCT
GGTGACCTCACCAAGCCACCGCACGGCGAACCGAGAGCACCAGCCAGTTTAGTGGACCCTCAGCGTGCACCTCATGCGCC
TGCTATAGTATCCGCAGTCGCCATCTTTCATCATCCCATCTTCA--GAAAGATGAACGCATCATAGTTCAAAAGATAACA
AGGAAGGAAAATTTAATTATAGCAGCGTGCAGGTGCAGATATGCACCAACCATCATCAGAGCTCAAGGACAAAC----AC
CAAGCCATTTTCTTTCCTTTCTTTCGGTGGCTAGGGCAAACTCTCCCCTCCAAGCTTTTCTTCGGCTCTTCTTTGAGCAT
GGCAAATGCCGGTCGCACTTACTGGCCATCGGCTATGCTTGA----CGAGGTGGCGGTCAGGGATCTTCAGGACGTGAGA
AAGCCCCCCACGACATTTCGTATAGGAGTGCGTCGCAGTCCCATGATTCCCACCAAAACAGATCTTAAAACGGAACTCGG
CAAAAACAGGAAAGAAGAGAATTCAAACAGACACATAGCTGAAACCGCGTCTACATCCGCGCTTGGACGC----CTAGCT
AGGGGGCCCAGCGTCATACTCAAACGCGAGCCGTCGCGCCTCCGGACTCCACTCGCAATCAAGGCGGTAA--CTCTCATC
CGTTCCCGAGTCCGAAACAAAACGTGCAAATCGTCCCGTGTCGATGCATATAAGCAGCGCTCGTCTCCCCAATCCACCCC
CTGTCCAGACTTCCAGTCCCTCGTCCTCCCCAAGATCGCTCGGCGCACCTGCGGCACAGGAAAGCCAGGCTCTCGCGCGC
GTTCCAATCCCAAGCGAGCCCCGAAATCTCCATCAAACCCTTAAGGAAGGACGAGCATGGCCACCTCGGTGCTCCACCAC
CTCGCCGACGTGGCCCAGAACAAGCGCAACCCGATCCTTTCGCTGCCGTCGTGCGCCACACGCCTGCGCATCAATCCTGC
CTGCTTCGCGATGCCGGAGGACGCCGGCGCCAGGGACGCGAAGCGGAGGCACCGTTGCCACGACGAGCCGCCACGTTCGC
CAGACGTCAAGCGCCGCCGACGTGACGACGCGCGCGTCGTGCCCCCGCACACCTCGAGGAAGAGGGAGACCGTGAAGCAC
CACCGCGACGAGGAATCGCCAGAATCCAAGCGCCGACGACACTATGATGACCGGAGGGGTACGTCTTCATGGTCGCGCAG
CTCTTTCGGCAGCACGAGGCTGGCGACGGGCGGCGAGGTTCACGCGGCCAGCCGCGAAGACCCCCGCCGCACGGCCAAGA
ACCTGGAGCGCGAGCGCGCGCGGGAGACCACCAGGGGAAGCAGCAGCTCGCGGTTTGAGCCGAGGGCTATGCCGGATCCC
TGCGCCGCGCAAGGGCAACGACACCTGCCGGTCGCGGCTATCGCAAGACCACGTGCCGTTTCTCTTGACGTTCGGCCGCC
ACAGGAGTACACGGAGAGTTTCGAGGAGGCCAAGCTGCGAAGGATGGAGATCCAGCGGAAGAGGGAGGAGGCCCGCCGGG
AGATGGACAAGGTGGTGCAGGCCGTCTACTTCAACGATCCATACATATCTCCCCTGGATATGTTCAAGCGCTGATGAATG
CTGGGTGGCCTGGAGGGAGAAACAAAGATCTGCCTGCGTAGTAATAATATCTCAAGAGACGCAAATATTAATTCACAAAT
ACTCATACAGCGGGCACGATGAGTTC------------------------------------------------------
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-----------------------------TAGGAATGTGTACTAATTCTTCAAGATGACTTCCATGAAGCATTCATCCAA
ATTCTGAAAATTGTATTACATAATTTACGCAACGATAGTTACTGTTCGATTGGTTACAATACGGTGTCGAGTGAACGTTT
AATTGCTTCAAGTTGTTAATTA------ATCAAATATGTATGTCTTTTTCTTGAGGGGAAATCAAATCTGTATGTCTTTT
CTTTAATTTTGCTTTTCATGTCACCCGCGACATTTTTTTTCTTTTGCTTTTCATGTGTTTCATTTCCATGTTACTATTTC
ACATCCAATAGACTAGAGATGCCAATCTGTCAGGTATAGAGCAGGTACAACAATCTCATGCCCATACTCGATATTTTAAT
GGATGCCAATATCTATCCATAGCCATGCCCGCTGGTATAAAATTGCACACCTGCATACTCTGTTTGTATCCATGTCCCAG
GGGTACCAAACGAACAACTAATTAAACAGACTTATT-AAAATGTATGTCACTGAAAGGACCTTTTGGCAAAACAAATACT
ACAAAATTGCACTAGTTTCATGACATGGTCAAAGAAAAAGGACTTCAATAGTTTTAAAAATGTCTTCATGCACT-AAACA
CATCAAATTATTGATGTGCATGTATGATTTTAACTATAGGAAACTCTTCGATATGGTCGGCTGATCACGCGTTCCACTGG
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-------CTCCTGCCACTGCTATCACCGTATCAGTCGCGTGCGCGCGGCCGCCACTGATCATATCCTTTACCTGTGGCAG
GCATCCACTTGAGCCCACCACGGTTATATTATGCTTGCCGAAAATAAAATAAAAACACTACCATGGCAGCGTTTTTGGGT
GCAGTTGCAACCTTTTTTCAATTTAGCAATAATATCAGTACCCTAAAGTCAT
>chr2B_2
-TTATATTTAGAAACGAGGGGAGTATTATTCAACCGAATCTGACAAAAAGAAGATGGATCAACCTAATTCCACTTTCCTG
AAAACCTCTGTCACTACACCTAAAAATTTGATGGTGTGTCTTGAGCCCTTGACCTCGCACCAACACACACCATTTAATCT
GATGGCCTCACCAAGCCACCGCACGGCCAACCAAGAGCACCAGCCAGTTTAGTGGACCCTCAGCGTGCACCTCATGCGCT
TGCTATAGTATCCGCCATCGCCATCTTTCACCATTCCATCTTCA--GAGGGATGAACGCATCATAGTTCAAAAGATAACA
AGGAAGGAAAATTTAATTATAGCAGCGTGCAGGTGCAGGTATGCACCAACCATCATCAGAGCTCAAGGACAAAT----AC
CAAGCCATTTTCTTTCCTTCCTTTCGGTGGCTAGGGCAAACTCTCCCCTCCAAGCTTCTCTTCGGCTCTTCTTTGAGCAT
GGCAAATGCCGGTCGCACTTGCTGGCCATCGGCTATGCTTGA----CGAGGTGGCGGTCAGGGATCTTCAGGACGTGAGA
AAGCCCCCCACGACATTTCGTATAGGACTGCGTCGCAGTCCCATGATTCCCACCAAAACAGATCTTGAAACGGAACTCGG
CAAAAACAGGAAAGAAGAGAATTCATACAGACACATAGCTGAAACCGCGTCTACATCCGCGCTTGGACGCCTAGCTAGCT
AGGGGGCCCAGCGTCATACTCAGACGCGAGCCGTGGCGCCACCGGACTCCACTCGCAATCAAGGCGGTAA--CTCTCATC
CGTTCCCGAGTCCGAAACAAAACGTGCAAATCGTCTCGTGTCGATCCATATAAGCAGCACTCGTCTCCCCAATCCACCCC
CTGTCCAGACTTTCAGTCCCTCGTCCTCCCCAAGACCGCACCTACGG-----------------------------GCGC
GTTCCAATCCCAAGCGAGCCCCGAAATTTCCATCAAACCC-TAAGGAAGGACGAGCATGGCCACCTCGGTGCTCCACCAC
CTCGCCGGCGTGGGCCAGACCAACCGCAACCCGATCCTTTCGCTGCCGTCGTGCGCCACGCGCCTGCGCATCAACCCTGC
CTGCTTCGCGATGCCGGAGGACGCCGGCGCCAGGGACGCGAAGCGGAGGAACCGTTGCCACGACGAGCCGTCACGTTCGC
CAGTCGTTAAGCGCCGCCGACGTGGCGACGCGCGCGTCGTGCCCCCGCACACGTCGAGGAAGAGGGAGACCGTGAAGCAC
CACCGCGACGAGGAATCAAAAGAATCCAAGCGCCGACGACACTATGATGACCGGAGGGATACGTCTTCATGCTCGCGCAG
CTCTTTCGGTGGTAGGATGCCGGCGACGGGCGGGGAGGTTCACGCGGCCAGCCGCGAAGACCCTCGCCGCACGGCCAAGA
ACCTGGAGCGCGAGCGCGCGCGGGAGACCACCAAGGGAAGAAACCGCTCTCTGTCTGAGCCGAGGGCTATGCCGGATCCC
TGCGCCGCGCAAGGGCAACGACACCTGCCGGTCGCGGCTATCGCAAGACCACGTGCCGTTTCTCTTGACGTTCGGCCGCC
ACAGGAGTACACGGAGAGTTTCGAGGAGGCCAAGCTGCGAAGGATGGAGATCCAGCGGAAGAGGGAGGAGGCCCGCCGGG
AGATGGACAAGGTGGTGCAGACCGTCTACTTCAACGATCCATACATTTCTCCCCTGGATATGTTCAAGCGTTGATGAATG
CTGGGTGGCCTGGAGGGAGAAACAAAGATCTGCCTGCGTAGTAATAATATCTCAAGAGAAGCAAATATTAATTCACAAAT
ACTCATACAGCGGGCATGATGAGTTC------------------------------------------------------
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-----------------------------CAGGAATGTGTATTAATTCTTCAAGATGACTTCCATGAAGCATTCATCCAA
ATTCTGAAAATTGTATTACATAATCTAGGCAACGATAGTTACTGTTTGATTGGTTACAATGAGGTGTCGAGTGAACGTTT
AATTGCTTCAAGTTGTTAATTA------ATCAAATCTGTATGTCTTTTTCTTGCGGGGAAATCAAATGTGTATGTCTTTT
CTTTAATTTTGCTTTTCATGTCACCCGTGACA-----TTTTTTTTGCTTTTCACGTGTTTCATTTCCGTGTTACTATTTC
ACATACAATTGACTAGAGATGCCAATGTGTCAGGTATAGAGTAGGTACAACAATCTCATACCCATACTCGATATTTTCAT
GGATGCCAATATCTACCCATAGCCATGCCCGCGGGTATAAAATTGCACATCCACATACTCTTTTGGTACCTATGCCCAAT
GGGTACCCAACGAGCAACTAATTAAACGGACTTATT-AAATA-TATGCCATTAAAAGCATCTTTTGGCAAAACAA-TACT
ACAAAATTGCACTAGTTTTATGACATGGTCAAAGAAAAAGGA-TTCAATAGTTTTTAAAATGCCTTCATGCCTTGAAACA
CATCAAATTATTGATGTGCATGTATGATTTTAACTATAGGATACTCTTCGATATAGACGGCTGATCACGTGTTCTATTCT
ACTTGTCACGCAACTGTTGAATTGCCTTTTTGGTCCACCAACCACATTACTTTGGGGCCCACAAGCGCACTGCCCTCTCC
ATCATCTTATCCACACAGGAAAGGCTCCGCCGCTCGTTTTTATTACCTTCTCTTTCCTTAATCCCAGATCATGTCCCCAA
CCCCATTTAGTATGTACCATCTCTCCCGTATTTGGCGAGCAACTTTGCGGTCCAACAGGGAGGGCCAATGCTGCTGCAAT
AGGCCGGTTGCAGGTGCTACGAGCCCGAGAGGTGTTGGGGTGTACTTCTAGTAGGGTATCATTGCTACTGCAATGGTTGT
TGTGTTGATGATGGTGACGACAAGAAGCACTACTGCAAGAATGCTTAGCAGTGGCGTGCCAGACTCCCAGGGGCGCCTGC
CACTGACCTCCTGCCACTGCTATCACTGCATCAGTCGCGTGCGCGCGGCCGCCACTGATCATATCCTTTACCTGTGGCGG
GCATCCACTTGCGCCCGCCACAGTTATCTTATGCTTGCCGAAAATAAAATAAAAACACAACCATGGCAGCGTTTTTGGGT
GCATTTGCAACTTTTTTTAG-TTTAGCAATAATATCAGTACCCTAAAGTCAT
>chr2A_2
-TTATATTTAGAAACAAAAAGAATATTATTCAACCGTGTCTGACCAAAGAAATATGGACCAACCTAATTCCATTTTCCTG
ATGACCTCTGTCACTACACCTAAAAGTTTGACTGTGTGTCTTCCGCCCCTGACCTCTTACCAACACACACCATCCAATCA
GATGGCCTCACCAAGCCTCCGCACGGCGAGCTGAGAGCATCAGCCAGTCTAATGGATCCTCAGCATGCACCGCATGCGCT
TTCTATAGTATCCGCCGTTGCCATCTTCCAGCATCCCATTCTTTAGGAGGGATGAACGCATCATAGTTCAAAAGATAACA
AGGAAGGAAAATTTAATTACAGCAGCGTGCAGGT------ATGCACCAACCATCATCAGAGTTCGGGGACAAACAAACAC
CAAGCCATTTTCTTCCCTTTCTTTTGCTGGAGAGGGCAAACTCTCT--------CTTCTCTTCGGCTCTTCTTTGAGCAT
GGCAAATGCCAGTCGCACTTGCTGGCCATCGCCTATGCTTGACGATCGAGGTGGCGGTCAGGGATCTTCAGGACGTGAGA
AGCT-CCCCACGACATTTCGTATAGGAGTGCGTCGCAGTCCCATGATTCTCACCAAAACAGATCTTAAAACGGAACTCGG
CAAAAACAGGAAAGAAGAGAATTCAGACAGACACATAGCTGCAACCGCGTCCACATCCGCGCTTGGACGCCTG----GCT
AGGGGGCCCAGCGTCATACTCAAACGCGAGCCGTGGCGCCACCGGACTCCACTCGCAACCAAGTCGTTAACTCTCTCATC
CGTTCCCGAGTCCGAAACAAAACGTGCAAATCGTCTCGTGTCGATCCATATAAGCAGCTCTCGTCTCCCCAATCCACCCC
CTGTCCAGAC---CAGTCCCTCCTCCTCCCCAAGATCGCTCGGCGCACCTGCGGCACAGGAAAGCCAGGCTCTCGCGGGC
GTTCCAATCCCAAGCGAGCCCCGAAATTTCCATCAAACCC-TAAGGAAGGACGAGCATGGCCGCCTCGGTGCTCCACCAC
CTCGTCGACGTGGCCCAGACCAACCGCAACCCAATCCTTTTGCCGCCGTCGTGCGCCACCCGCCTACGCATCAACCCTGC
CTGCGTCGCGATGCCGGAGGACGCCGGCGCCAGGGACGCGAAGCGGAGGCACCGTTGCCACGACGAGCCGCCACGTTCGC
CAGACGTCAAGCGCCGCCGACGTGACGACGCGCGCGTCGTGCCCCAGCACACCTCGAGGAAGAGGGAGACCGTGAAGCAC
CACCGCGACGAGGAATCAACAGAATCCAATCGCCGACGACACTATGATGGCCCGAGGGGTACGTCTTCATGCTCGCGCAG
CTCTTTCGGCAGCACGAGGCCGGCGACGGGCGGGGAGGTTCACGCGGCCAGCCGCGAAGACCCCCGCCGCACAGCCAAGA
ACCTTGAGCGCGAGCGCGCGCGGGAGACCACCAGGGGAAGAAACCGCTCGCGATCTGAGCCGAGGGGTATGCCGGATCCC
TGCGCCGCGCAAGGGCAACGACACCTGCCGGTCGCGGCTATCGCAAGACCACGTGCCGTTTCTCTTGACGTTCGGTTGCC
ACAGGAGTACACGGAAAGTTTCGAGGAGGCCAAGCTGCGAAGGATGGAGATCCAGCGGAAGAGGGAGGAGGCCCGCCGGG
AGATGGACAAGGTGGTGCAGACCGTCTACTTCAACGATCCATACATATCTCCCCTGGATATGTTCAAGCGCTGATGAATG
CTGGGTGGCCTGGAGGGAGAAACAAAAATCTGCCTGCGTAGTAATAATATCTCAAGAGACGCAAATATTAATTCACAAAT
ACACATACAGCGGGCACGATGAATTCTACTCCCTCCATTCCTAAATATTTGACTTTCTAAATATTTTAACAAATGACTAC
ATACAAAACAAAATGAGTGAATCTACACACTAAAATATATCAATATACATCCGTATATGGTAGTTCATTTGAAATCTCTA
AAAAAATAAATATTTAAGAACAGAAAGAGTAGGAATATGTACTAATTCTTCAAGATGACTTCCATGAAG-----------
----TGAAAATTGTATTACATAATTTACGCAACGATGGTTACTGTTTGATTGGTTACAATACGGTGTCGAGTGAATGTTT
AATTGCTTCAAGTTGTTAATTAATCATAATCAAATATGTATTTCTTTTTCTTGCGGGGAAATCAAATCTGTATGTCTTTT
CTTTAATTTTGCTTTTCATGTCACCCACGACA-TTTTTTTCTTTTGCTTTTCATGTGTTTCATTTCCGTGTTACTATGTC
ACATCCAATAGACTAGAGATGCGAATCTGTTAGGTATAGAGCATGTACAACAATCTCATG-CCATACTCGATATTTTAAT
GGATGCCAATATCTACCCATAGCCATGCCCGTGGGTATAAAATTGCATACCTGCATACTCTGTTAGTATCCATGTCTGAG
GGGTACCCAACGAACAACTAATTAAACCGACTTATTTAAATA-TATGCCACCGAAAGGATCTTTTGGCAAAACAA-TATT
ACAAAATTGCACTAGTTTCATGACATGGTCAAAGAAAAAGGACTTCAATAGTTTTAAAAATGTCTTCATGCACTGAAACA
CATCAAATTATGAT------------------------------------------------------------------
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>SNPs
S-------------------------S-------------------------------------------------S---
--------------------------------------S-----------------------------------------
-S--S--------------------------------------------------------------------------S
---------------S--------------S-----------------SS------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------------S----------------------
--------------------S-----------------------------------------------------------
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-------------------------S------------------------------------------------------
----------------------------------S-----S---------------------------------------
-----------------------------------S---------S------------S---------------------
------------S-------------------------------------------------------------------
---------------------------S------------S---------------------------------------
-------------------S---S-----------------------------------S--------------S-----
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-----------------SS----------------------------------------------------S--------
--------------------S------------S----------------------------------------------
----------------------------------------S-S-S---------S-------------------------
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--------------------S-----------------------------------------------------------
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----------------------------------------------S---------------------------------
-----------------------------------------------------S--------------------------
--------------------------------S----------------------------------S------------
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---------------S----------------S-------------------------------S------------S--
-------S-------------------S------------SSS----S-----------S---------------S----
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-----------------------------------------S------------S-S------------S----S-S-SS
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--------------------------S-S-------------------------------------------------S-
-----------S----S----S-----S------------------------------S---------------------
---S-------S------SSS-------------------------------
>forward_256
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----------------------------------------------------------------------------CGCC
TGCTATAGTATCCGCA----------------------------------------------------------------
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>reverse_1701
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--------------------GCCGTCTACTTCAACGATCCA---------------------------------------
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>forward_1352
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----------------------------------------------------GGAGGGGTACGTCTTCATGG--------
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>reverse_3259
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----------------------------------------------------------TACCATGGCAGCGTTTTTGG--
----------------------------------------------------
