>input_sequence_70186
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-------------------------------------------ATGCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCA
AGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGGCCATGGCGCCTTTGGCGGCCGCGGCCGCGGCGGTG
GCGGCCAAGGAGGAGCACAACGTGACCGTGGCCGTGGCGCCGCCCATCCCCATGGCGATGGCGATGCCGCTGCAGCAGCA
GCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGC
GGACGCGCATCTGGCTGGGGTCGTACGCCACGCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGTCTTCTACCTGCGC
GGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTCGCGCTGTCGTCGCCCGAGGCCGCCGAGGCCGGCGC
TGCCGGAGGGGAGATGGCGGGCGAGCTGGGCGACGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAAG
TCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACGATGGTCGCCGCGCCCACGCACCAACGGGAGCGGCAGAGG
CT---CCACCACCACCACCACGCGGAGCCGCACGGCGAGGAGCTGCACCGCCACGTGAAGCAGCAGCGGACGGCGTGGAA
CGGGCGCGCCAAGAACCCGGATCTCAACCAGGCGCCGAGCCCGGACACCTCCGACGCCGAG------TGA----------
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>chr2B_1_TraesCS2B01G542300
ATGCAAAAAACGTGAGGACAACCATTTTTTCTTCCTTTTGCGGGGGTAAGGATAATCTTT-TCATTGCCTAGTCAGATTT
GTCATGTAA---GACATGCATATTTCTTCTATAATTTGTCCTTATTGTATACTCAAAGCGATTACTTGTTGACCCGAAG-
-ATGTGAATGGAACTTGGACAAGAAGAAACCAGAGCGGCAACGGAGGTCAACAAAATTACAGCGTTGCGACAAGTGCGCA
GGAA-----GGTTGGTGAGCAACAGAGAAGGATTGATCGAATGTGACGTTGCGGTCATCTTATCG--TAATTTACCACGA
GAAAGAACCTCTCAAGTTTTTTC----TTGGACCAGCGACAACAACGATGTTGCTCGCTTCTGTTTCCACAGTGAGAGTA
AATAACGAATTGTGCACCAGATACAATGCAAATTCCAGTTCCGAGGCAACCAATTCGCCACGCTAGCTTGTCCATCAGCT
TCAGATCAAGCAGCCATGAGTTGACGCTAGCTGTGCCGGAAGTATATACAGATACAAATACGTAC-AACCGACCGATGTT
GCTTCGGAGAATTGTACGTATGCACGTATCGGCTACTGGTCCAATA--------TACGTACGGATATGCATGGGCCTCTG
--------------------------GGTGGGCCTAGCGATTTGGGGTGCCGCTGGCCTGGCTCGGATCGGGTCAGGCTC
CCTTCCAAACAGCACAGTAGAGTACACTGCTGCTGCTGCCGCTGCTGCCGTCGATGTCCTCTTCTCTTCTCCCTCCC--G
AGCGGAGCTAGTTTATGATTATCCCAACCAAACTCTAATCATACCCCCACCCACAAAATCCCAATACAAATACCACCGCC
CAGCAAATAGATAGATAGCCCGG-----ACTGGAGGGAGGGAAGAGAGAGAAACCAGCTC-------CTGCAAACCAAAA
GCTACTCCTCCTTTGCGCACGCGG----CAGG---------GAGAGAGCAGCCGAGGCGGCGGCCGGCGGCTAGCCAGCA
TAGGAGCTTAGGTAGGTGGTAGGCAGCTCA----GCTTCGCTCATGCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCA
AGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGGCCATGGCGCCTTTGGCGGCCGCGGCCGCGGCGGTG
GCGGCCAAGGAGGAGCACAACGTGACCGTGGCCGTGGCGCCGCCCATCCCCATGGCGATGGCGATGCCGCTGCAGCAGCA
GCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGC
GGACGCGCATCTGGCTGGGGTCGTACGCCACGCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGTCTTCTACCTGCGC
GGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTCGCGCTGTCGTCGCCCGAGGCCGCCGAGGCCGGCGC
TGCCGGAGGGGAGATGGCGGGCGAGCTGGGCGACGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAAG
TCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACGATGGTCGCCGCGCCCACGCACCAACGGGAGCGGCAGAGG
CT---CCACCACCACCACCACGCGGAGCCGCACGGCGAGGAGCTGCACCGCCACGTGAAGCAGCAGCGGACGGCGTGGAA
CGGGCGCGCCAAGAACCCGGATCTCAACCAGGCGCCGAGCCCGGACACCTCCGACGCCGAG------TGAAGCAGCTAAG
CAGCAAGAAGAAGCAGCGGCTTCCG-----GTCATCCACAACCAGTCGACCATGC----AGCCAGTCTCCGGAGAGCAGC
CAGCGTATGATCAACC-ATCAGATTCAGCACAACCAACTCAATCCAGTCCGCCGACCCACCTACCGTTCCGCCTGTCTCC
CTAGCAAGCTCCGCCGCGTCGGT------GAGGGCGCGCGGCGAGGTACCGGTGGTCGGTGGGTCGGTGGCGAGATTTTT
CAATACGTTGTTCTGGATAAGAACAAGGGAGGG-GAGGGGAGGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCA
AAAAAGACAGCTGTAACAGT-GATAAAACAATCGCCACCATCTTCTTTCTTTTCTCCCTCTCTCC----------CTGGC
TGTTATCGAGTAGATAAGCAGCGATTAGCAGTACAAC-TTGTCTTAATTAATCG-CCCAGTTGGCCGACTCGATCGCCCC
CTCCGTTG----TT---AATTGCTGAGTGCATCGCTTCTGGATTTTGATCTCGTATACAATTGAATTGATCCAGTGGTTC
GTACGTACGTATCCCGTC-GCTGGGCTTAATCCGGCTGTCTGCTGGTGGGAGCAGCAAAGCA--AAGCATATCCGCGTTA
GGTTAGGCATCGGCAGCCGGCCACCAT--------GCACTCATTAATCAGTT-GAGATGAGACTTTTCTCCGTCCATGTC
TCTG---CTGCATGCGTGTGTCTGGATCTGAATGTGCCGGTGCGATTATGGACGAGGGCGTCGTGGCGGATTGGTGCTG-
-----------------GTGGCTAATCTAATCGCCAACG------AACCAAGTGGAGCTAGCTACATGAGCACGAGGCGC
CAGTGGCAATTAGGATCGCAGGTAGAATGCTGGTGCATGCTGCTAGTATATGTACGGGTGATTGGTTTGGATGGGTGTTA
GGCCACCACATCGGATGACCGAAAAGCAAAGCCAGCTCCAGCGCGGTGGATTGGTGATGATTGCGGTTTTCGCGCTCTGC
ATGCGCTGATCGGCCAAGTACTCCTG
>chr2D_2
TGCAAAAAAACGTAAGGACCACCTTTTTCCTTTC----TGCGGGGGTAAGGATAATCTTTGTCATTGCCTAGTCAGGTCT
GTTTTGTAATAAGACATGCATATTTCTTCTAGAATTTGCCCTTATTGTATACTC-AAGCGGTTACTTGTTGACCCCAAAA
AATGTGAACGGAACTTGGACAGGAAGAAACCAGAGCGGCAACGGAGGTCAACAAAATTACAGCGTGGCGACAAGTGCGCA
CGGCACGAGGGTTGGTGAGCAACAGAGAAGGATG----GATTGTGATGCTGCGATCATCCTATCATATAACTTACCACGA
GAAAGAACCGTTCATGTTTTTCTTGGATTGGACCAGCGACAACAACGATGG----------TGTTTCCACAGCCAGAGCA
AGC----AATTGTCCACCAAATACA-----AATTCCAATCCTGAGGTAACTAATCGGCCATGTCAGCTTCAGA-------
----ATTAAGTAGCCATGAGTTGACGCTAGCTGTGCCGAATGTAG-TACAGGTACAAATACAGCCGAACCGATTGATGTT
GCCTGCGAGAATTGTACGTAT--ACGGATGGACTACTGGTCCAATACGTGTATGTATGTAGGGATATGCATGGACCTCTG
GGGTGTCGTCCGGACGCAGGTTAGGCGGTGGACCTAGCGATTAGGGGTGGCGCTGGGTCGGATCGGGTCGGGCCAGGCTC
CCTTCCAAACAGCACAGTAGAGTACACTGCTGCT------GCCGCCGCCGTCGATGTCCTCTTCTCTCTTCCCCCCTCCC
GCCCG-----GTTTATGATTATCCCAACCAAACTCTAACCATACCCCCACCCACAAAATCCCAATACAAATACCACCGCC
CAGCAAATAGATAGATAGCCCGG-----ACCGGAGGGAGGGAAGAGAGAGAGTCCAGCTCCGCT--GCCGCACACCAAAA
GCTACTCCTCCTTTGGGCACGCGG----CCGGCAGGGAGGGGAGAGGGGAGCCGAGGCGGCGGCCGGCGGCTAGCCAGCA
TAGGAGCATAGGTAGTTGGTAGGCAGCTCA----GCTTCGCTCATGCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCG
AGGGCTCCGCGGGGTCGGCGT---------CGGCTGCGGCGGCGGCGATGGCGCCTCTGGCGGCTGCGGTCGCGGCGGTG
GCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCCATGCCCATGGCGATGGCGATGCCGCTGCAGCAGCA
GCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGC
GGACGCGCATCTGGCTGGGGTCCTACGCCACCCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGTCTTCTACCTGCGC
GGCAGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTGGCGCTGTCGTCGCCCGAGGCCGCCGCCGAGGCCG-
-----GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAGG
TCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGGTCGCCGCGCCCGCGCACCACCGGGAGCGGCAGCGG
CTCCACCAACACCACCACCACGCGGAGCCGCACGCTGAGGAGCTGCACCGCCACGTGAAGCAGCAGCGGACGGCGTGGAA
CGGGCGCGCCAAGAACCCGGATCTCAACCAGGCGCCGAGCCCGGACACCTCCGACGCCGAG------TGAAGCAGCCAAG
CAGCGAGAAGAAGCAGCGGCTGCT--TCCAGTCATCCACAACCCGTCGACCATGC----AGCTAGTCTCCGGAGAGCGGC
CAGCCGGCGTATGATCAATCAGATTCAGCACAACCAACTCAATCGTG--------------------TCCACCTGTCCCC
CTAGCGAGCTCCGCCGCGTCGGT------GAGG----GCGGCGAGGTGCCGGTGGTCGGTGGGTCGGTGGCCGGATTTTT
CAATACGTCGTTCTGGATAAGAACAAGGGAGGG--AGGGGAAGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCA
AAAAAGACAGCTGTAACAGTTGATAAAACAATCGCCACCATCTTCTTTTTCTTCTCTCTCTCT----------------C
TGTTATCGAGTAGATAAGCAGCGATTAGCAGTACAATGTTCTGTTAATTAATCGTCCCAGTTGGCCGACTCGATCGCCCC
CTCCGTTG----TTGTTAATTGCTGAGTGCATCGCCTCTGGATTTTGATCCCGTATACAAT----TTGATCCAGTGGTTC
GTACGTATCCAGTCGCTCGGCTCGGCTTAATCCGGGTGTCTGCTGGTGGGAGCAGCAACAAAGCAAGCATATCCGCGTTA
GGTTAGGCATCGGCAGCCGGCCA--------GCCAGCATGCACTAATCAGTT-GGGGTGAGACTTTTCTCCGTCCATGTC
TCTGCCTCTGCATGCTTGTGTCTGAATCCGAACGTGCCGGCGCAATTATGGATCAG-----------GGAGCGGCGGGCC
GATTGGTACTGCTACTCGTGGCTAATCTAATCGCCAACGCCAAGGAACGGAGTGGATCTAGCTACATGAGCACAGAGG--
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>chr2A_615
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--------------------------GGTGGGCCTGGCGATTTGGGGTGCCGCTGGCCTGGGTCGGATCGGGTCAGGCTC
CCTTCCAAACAGCACAGTAGAGTACACTGCTGCTCCT---GCCGCGGCCGTCGATGTCCTCTTCTCTCTTCCCCCTCCGG
ACCGGGGCTAGTTTATGATTATCCCAACCAAACTCTAATCATACCCCCACCCACAAAATCCCAATACAAATACCACCGCC
CAGCAAATAGATAGATAGCCCGGGCTGGACTGGAGGGAGGCAACAAAGAGAGACCAGCTCCGCCCCGCTGCACACCAAAA
GCTACCCCTCCTTCGGGCACGCGGGCGGCCGGCCGGGGAGAGAGAGGGCAGCCGAG----------GCGGCTAGCCAGCG
TAGGAGCTTAGGTAGGTTGTAGGCAGGCAGCCTCGCTTCGCTCATGCAGCAGGGCGAGTACCGCTCGTCGTCTTCCAGCG
AGGGCTCCGCGGGGTCGGCTGCTGCGGCT---GCGGCGGCCGCGGCCATGGCGCCCCTGGCGGCTGCGGCCGCGGCGGTG
GCGGCCAAGGAGGAGCACAACGTGACGGTGGCCGTGGCGCCGCCCATGCCCATGGCGATGGCGATGCCGCTGCAGCAGCA
GCAGCCGCGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGCGAGCCGCACAAGC
GCACGCGCATCTGGCTGGGCTCCTACGCCACCCCCGTCGCCGCCGCGCGCGCCTACGACACGGCCGTCTTCTACCTGCGC
GGCCGGTCGGCGCGCCTCAACTTCCCCGACGAGATCTCCGCGCTGGCGCTGTCGTCGCCCGAGGCCGCCGAGGCCGGCG-
-----GAGGGGAGGAGCCGGGCGACGG------CGGCGGCGCGCTGTCGGCCGCGTCGATCCGGAAGAAGGCCATCGAGG
TCGGGTCCCGCGTGGACGCGCTGCAGACCGGCATGACCACCATGGTCGCCGCGCCCGCGCACCACCGCGAGCGGCAGCGG
CTCCACCACCACCACCACCACGCGGAGCCGCACGGCGAGGAGCTGCACCGCCACGTGAAGCAGCAGCGGACGGCGTGGAA
CGGGCGCGCCAAGAACCCGGATCTCAACCAGGCGCCGAGCCCGGACACCTCCGACGCCGAGGCCGAGTGAAGCAGCTAGG
CATCAAAGAGAAGCAGCGGCTTCCAGTCCAGCCATCCACAACCCGCCGCCCATGCAGCTAGCTAGTCTCCGGAGAGCCGC
CAGCCGGCGTGTGATCAATCAGGTTCAGCACAAGCAGCTCAATCCAGTCCACCCACCCACCTACTGTTCCGCCTGTCTCC
CTAGCAAGCTCCGCCGGGTGCGCGTCGGAGAGG----GCGGCGAGGTGCCGGTGGTCGGTGGGTCGGTGGCCGGATTTTT
CAATACGTCGTTCTGGATAAGAACAAGGGAGGGGGAGGGGAGGCGGGGGACGCCACAAGTGGCGGTCTTTCCAAATGTCA
AAAAAGACAGCTGTAACAGT-GATAAAACAATCGCCACCATCTTCTTTTCTCTCTCTCTCTCTCGCCGTCTCTTGCTGGC
TGTTATCGAGTAGATAAGCATCAATTAGCAGTACAATTTTCTGTTAATTAATCGTCCCAGTTGGCCGACGCCATCGCCGC
CTCCGTTGTTACTTGTTAATTGCTGGGTGCATCGCTTCTGGATTTTGATCTGGTATAC-----AATTGATCCGGTGGTTC
GTACGTATCCAGTCGCT-----GGGCTTAATCCGGGTGTCTGCTGGTGGGAGCAGCAGCAAAGCGAGCATATCCGCGTTA
GGTTAGGCATCGGCAGCCAGCCAGCCAGCCAGCCAGCATGCACTAATCAGTCGGGGGTGAGACTTTTCTCCGTCCATGTC
TCCG---CTGCATGCGTGCGTCTGAATCCGAACGCGCCGGTGCAATTATGGATCAG-----------GGATTGGTACCG-
-----------------GTGGCTAATCTAATCGCCAACGCCAACGAACCAAGTGGAGCGAGCTGCATGAG----------
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>chr2D_990
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----------------------------CA----GCTTCGCTCAT---GCAGGGCGAGTACCGCTCGTCGTCTTCCAGCG
AGGGCTCCGCGGGGTCGGCGGCTGCTGCTGCGGCTGCGGCGGCGGCCATGGCGCCTCTGGCGGCTGCGGCCGCGGCGGCG
GCGGCCAAGGAGGAGCACAACGTGAAGGCGGCCGTGGCGCCGCCCATCCCCATGGCGATGGCGATGCCGCTGG-------
--AGCCGAGGAAGCAGTACCGCGGCGTGCGCATGCGCAAGTGGGGCAAGTGGGTGGCGGAGATCCGTGAGCCGCACAAGC
GGACGCGCATCTGGCTGGGGTCCTACGCGACGCCCGTGGCGGCGGCGCGCGCCTACGACACGGCCGTGTTCTACCTGCGC
GGGAGGTCAGCGCGGCTCAATTTCCCCGACGAGATCTCCGCGCTGGCACAGTCTTCGCCCGAGGCCGAAGC---------
------------------------------------CGGCGCGTTGTCCGCCGCGTCAATCCGGAAGAAGGCCATCGAGG
TCGGGTCCCGCGTGGACGCGCTCCAGACCGGCATGACCACCATGGTCGCCGCGCCCACGCACCACCACGAGCGGAAGAAG
CACCA---------------------------------------------------------------------------
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>SNPs
SSSS---------S-----S---S----SSS---SSSS--------------------------------------S-S-
--SS---------------------------S------S---------------S-----S--------------S--S-
--------S------------S-------------------------------------------S--------------
S-SS-----------------------------SSSSS--S-----S-S----S-----S----S-----S---------
---------SS---S------SS---------------------------SSSSSSSSSSS-----------SS----S-
-SSSSSS------S-----S-----SSSSS-------S-S-S----S---S---SS----S-SS-----SSSSSSSSSSS
SSSS--S---S---------------------------S-S---SS-----S---------SSS--------SS------
--S-SS---------------SS---S--S-S------------------------S---S------------S------
-------------------------------------------------------------S------------------
----------------------------------S--SSS--S--S---------------------SS----S------
-S---S--------------------------------------------------------------------------
---------------------------------------------------S--------------------S-------
---------------S-------------S----------------S---------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------S-------S---------------
--------------------------S-----------------------------------------------------
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----------------------S---------------------------------------------------------
--------------------------------------------S----------------------------------S
SSSSS--------SS-S-------SSSSSSSSS---------------------------------------------S-
----------------------------------------S-----------------------S---------------
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------------------------S------------------S------------------S--------------S--
----SSSS-SSSS-S-----------------------------------S--S----------S---------------
---------------------------------SSSS----------S-----------------------SS-------
--------S-----------------------------------------------------------------------
------------------------------------------------S-------S-------S---------------
------------------------------------S---S-S-------------------------------------
-------------------------------------------------------------SS-----------------
-------SSS-SS-SS-------------------S----------------------SSS-------------------
-----------------------S-SS-----------SS--S-----------S-S-----------------------
------------------------S---S---S----------S--------SS--SSSSSSSSSSS----------S--
-------------------------------------------------------------------------SSS-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_294
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----------------------------------GATCGAATGTGACGTTGCGG--------------------------
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>reverse_1865
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------------------------GGTCATCCACAACCAGTCGA------------------------------------
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