>input_sequence_70118
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--------GAGCAGACGCGCGCGAGCCCCACACACCTCGCCGCCGGCCATGGCCATCTCCGCCACCTCCAGCCTCGCGCT
CCACGCGGCCCCGTCCGCCGCCCGGCGCCGCATGCGCAGCGTCGTCGCCTCCGCAA------CGCGGTTCGACCGGCGCT
CGGCCGTGCTCCTCCTGCTGTCGGCCGCGGGTGCCGGGTCGTCGTTGGCGGCGGTGGCGCCGTCTGCGAACGCTGCCGGC
AGCATCGGGCTCTTCGGCATCCGGAAGAAGCTGGAGCGGGCGGAGGAGGCCGCGCGGGAGGTGGGCGAGGCCGCGGTGGA
GGCCGTGGAGGCCGGCGGGGAGGCGGTGGCGGAGGCCGGGAAGGAGGTCGCCGGGGAGGGCATGCAGCTGGCCGCCGAGG
CGGGGCTCGCCGGCGACGCGCTCGTGCAGGCCGGCGTGGTCGCCGGCGCAGAGGCGCTCGGGGTCCTCGTCGGCTTGTCC
GTCGTCAACGGCATCCTCAAGCCCGAGGCCTAGAGGGTTGGTCGGCTCGGTCCGTAGTGTTTTTGCTGGCCCATCCGGTG
TTTGGGTTTAGTGCTTACAGAAGGAACTGGCTATCATTATTTGTTCATGACTTTGTGGTGTGGTATATTTTAGTATGATT
TTATAGAGTGATGGATGCTCATAGTTCAACAATGTTATGTA-------GTATGCAACAAGATCATACAATTTGCTTTGTA
GGGAATTTGCGCTACATTAATGTATAAAACTTACATTGTTTC--------------------------------------
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>chr6A_1_TraesCS6A01G386400
TGTCGACACGAGGTTATGTCACACTATTTTGACTAGCTTAGATCTTGATTGTGTGATATACATCATAACGAACGATCTTC
CGTTCGGTGAAAACTAAAGAAAACC--TGTTTAACAAAACTTTATTTCCAATACGATGGTGAGTTGGTGACCATACTCAC
CAAGCCACGAGA-GATGCACATAAGCTAAGGTCATCTTGGATGGCTAAATTTCAAAACATGAGAATATCCAAAACATGTG
ACTGGGCTTATGTGTGTGGATTAACGTATGGTTTAAAAATGTATGAATACTTCAAATGGTGTACTCGAATGGTACCCATG
GGATAAATAAGGAACTTTAGAGGAACAAAAAGATCTGAACGTGATAGAGCAAAATCCGTCACACTCACGAAGTGAAAATA
TTGTTTGAGCCCATGTATATTTGGCCATCTATATAAATTCAACCTGTGCCTT----------------------------
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------------------------------------------------------------------GTAATCCCAAGGGA
TATTATATAGTTTT-TTTAATTC----TAACCTTATAAAAAATCCTACAATCCAAAGGAGTCATCGAGAAGCTACAAAAG
CTTTTTTTTACTAAAAGTATTGGTAACAGAAATACAACAATAGAG----------------ATAAAAAAAGAAAAACAAC
TAAAAGATTA--CCAAATCAAGCCGGAGCCACTGGTGTGAGTGACATGTCTCCTCTTCGTTGGCGCGACGAGGAGCAACC
AAAGCCACCATTGCCCACAACATCCAAAGTGGCACAAAGAAAGCGTGAGAATTTCCCACAAAAAGTGTTGGTAACATGAA
AGAAAACAGAGATATTTTT-ATTTTTGTCCACAAAAAAACAAAAATAAAAACAAATCAAGC----GGGAGCCACTGGCGT
GGTTTGAGCGTGACATGTCTC---CTCGTTGGCGCGACGAGGGACAACCAAACCACCGGTGTCCACCAGACCACCACATC
CTCCCAGCCCGACTACGAGAGGAGGGGCAGCCTCCTCCCTGCCACACACCACCACTCCTCACCGCACGCACGCACGCCTG
AGCCGATCGAGCAGACGCGCGCGAGCCCCACACACCTCGCCGCCGGCCATGGCCATCTCCGCCACCTCCAGCCTCGCGCT
CCACGCGGCCCCGTCCGCCGCCCGGCGCCGCATGCGCAGCGTCGTCGCCTCCGCAA------CGCGGTTCGACCGGCGCT
CGGCCGTGCTCCTCCTGCTGTCGGCCGCGGGTGCCGGGTCGTCGTTGGCGGCGGTGGCGCCGTCTGCGAACGCTGCCGGC
AGCATCGGGCTCTTCGGCATCCGGAAGAAGCTGGAGCGGGCGGAGGAGGCCGCGCGGGAGGTGGGCGAGGCCGCGGTGGA
GGCCGTGGAGGCCGGCGGGGAGGCGGTGGCGGAGGCCGGGAAGGAGGTCGCCGGGGAGGGCATGCAGCTGGCCGCCGAGG
CGGGGCTCGCCGGCGACGCGCTCGTGCAGGCCGGCGTGGTCGCCGGCGCAGAGGCGCTCGGGGTCCTCGTCGGCTTGTCC
GTCGTCAACGGCATCCTCAAGCCCGAGGCCTAGAGGGTTGGTCGGCTCGGTCCGTAGTGTTTTTGCTGGCCCATCCGGTG
TTTGGGTTTAGTGCTTACAGAAGGAACTGGCTATCATTATTTGTTCATGACTTTGTGGTGTGGTATATTTTAGTATGATT
TTATAGAGTGATGGATGCTCATAGTTCAACAATGTTATGTA-------GTATGCAACAAGATCATACAATTTGCTTTGTA
GGGAATTTGCGCTACATTAATGTATAAAACTTACATTGTTTCATGATGCTAAGTACCTGTTCGGCAACTGCCCAACGCCA
GA----AATCCTCAAATCCAGCTCCTCGAT-TCGCTTCCATCTTCCCGACGAAACTCGTGGTTCGAAAGAACCATTCGGC
AACAGAACTCCCAGATCCACGATCGCTAGTCTTGGGCTGGTAGCCGCTTAACATGTTAAGCACTTAAGCTCGATTCTAGC
ATGGTAGGG-----------------------------------------------------------------------
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------------------------------------AGGAAAGGTACTTGCTTCGTTCTTTTCTTCCCTGGTACGAATCG
TTTTCTTTCACTTCGCGGTGGTAGCTCTCCATAAATAATGTGAATTCCTTATTTTGCAACTCATGGAATCGCCAAAACAC
CAGCTCCTCATTTTTGCACTACAAACCATCTTAGATTTGTAAAGCTAACTTCACGGAGCTGACATGTTTGGCCCAGCTTC
GTCTGCTGACTTAGAGAAGCCAGGAGATGGGCAGTTGCCGAATAGGTCCTAAGAGTATGATTAGACACTCTGAAAACAGA
ACAACTTGTGATGGTTTGATAACAATTGTAATGGAAATGAACCAAGTGGAGCTTTTTTGAGGAAAATGTGGGATATATTA
ATCATATAGGTTTACAATCTACAGTGATAG-----------TAGATGCTACATTGGGTAGGACACCATCGTTCCAAAATG
ACAATTAGCTAGCCCATCTTCCATCTCTTTGACAATGAGTAATCGCAACCCTTCTAGCTCAAATGCCGCCTTCTTAACAT
GTTGAAAAAAAGAAAACCATGACGCAATCCAGAAAGGTCTTACATATCAAGAGCTCGGTATGCCAACATATAGGTGATAA
TGGTAGAACAATAACATTTCTCACCCTTCGAAGGCTCTTCAGGCGAGTGAGAAGTTCCACTTCTTCTGCATCACAACATG
CATCATGAATAGTCGCAAAGATGAACATGCGTCCTATCCCACACCTCTAAAAGCAGTCCATCCGGAGATAGAAGGAACGA
CCTGTCCACATTTATCTTGGCGCACTCAGTTTGGGTAGTGTCCAA
>chr6B_15
TATGTCACTACATTC-------------TTGACTAGCTTAGATGTCGACTGTGTGATACACATCACAATGAACGATCTAC
CATATGGTGAAAACTATAAAAAAAGCATGTTTAACAAAACTTTATTTCTAGTTCAATGGTGAGTTGGTAACCATACTCAC
CAAGCCACCAACTGATGCACATAAGCTAAGGTCATCTTGGA-GGCAAAATTCTAAAACATAAGAATATCCCAAACTTGTG
ATTGAGCTTATGTGTGTGGATTAATACATGGTTTTAAAAGGCATGAATGCTTCAAATGGTGTATTTGAATGGTACCCATA
GAATAAATAAGGAACTTTAGAGGAACAACTAGATTTGAAACAGATAGAGCATAATGTACTATTGTACTCTCGGCGCGCGC
GGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGT-CCAAAGAA
TTTTATATAGGATT-TTTAGATTCAAATAATGTTATAAATATCCTATGGT--CCAAAGAGTCGTCCAGAGACTACTAAAG
TTTTCTGG---TAAAAGTATTAGTAAACGAAAATA--AAAATAAATAGAGACCTCTTGCTTAAAAATGAATAAAAAGAAG
GCCT-----------AACCAAGTCGGGGCCACTGGTGTGAGTGACGTGTCTCCTCCTTGTTGGTGCCACGAGGAGCAACC
AAAACCACCGGTGTCCATGATATCCAAAATGTCACAAAGAAAGTGCAATAGTTTTCCCTAAAAAGTGTTAGTAACATGAG
CGAAAATGGAGATATTTTCCATTTTTTTCTAAGAAAAAATGAAAATGAAAATAAATCAAGCGGGTGGGAGCCACTGGTGT
TGTGTGAGTGGGACATGTCTCCTCCTCGTTGGCGCGACGAGAGGCAACCAAACCACCGGTGTCCACCAGACCACCACATC
CTCCCAGCCAGACTACGAGAGGAGGGGCAGCCTCCTCCGCGCCACACACCACCACTCCTCACCGCACGCACGCACGCCTG
AGCCGATCGAGCAGACGCGCGCGATCCCCGCACACCTCACCGCGGACCATGGCCATCTCAGCTACCTCCAGCCTCGCTCT
CCACGCGGTCCCGTCCGCCACCCGGCGCCGCATGCGCAGCGTCGTCGCCTCCGCCA------CGCGGTCCGACCGGCGCT
CAGCCGTGCTCCTCCTGCTGTCCGCCGCGGGTGCCGGGTCGTCGTTGGCGGCGGTGGCGCCGGCCGCGAACGCCGCGGGC
AGCATCGGGCTCTTCGGCATCCGGAAGAAGCTGGAGCGGGCGGAGGAGGCCGCGCGGGAGGTGGGCGAGGCCGCGGTGGA
GGCCGTGGAGGCCGGCGGGGAGGCGGTGGCGGAGGCCGGGAAGGAGGTCGCCGGGGAGGGCATGCAGCTGGCCGCCGAGG
CGGGGCTCGCCGGCGACGCGCTCGTGCAGGCCGGCGTGGTCGCCGGCGCCGAGGCGCTCGGGGTCCTCGTCGGCCTGTCC
GTCGTCAACGGCATCCTCAAGCCCGAGGCCTAGAGGGTTGGTCGGCTCGGCCCGTAGTGATTTTGCTGGCCCATCCGGTG
TTTGGGTTTAGTGCTTACAGAAAGAACTGGCGAGCATTATTTGTTCATGACTTTGTGCTGTGATATATTTTAGTATGATT
TTATAGAGTGATGGATGTTCATGGTTCAACTATGTTATGTA-------GTATGCAACAAGATCATGCAAATTGCTTTGTA
GGGAATTTGTGCTACATTAATGTATAAAGCTTACATTGTTTCATGATGCCAAGTACCTTTTCGACAACTGCCCAACAC-A
GA----AATCCTCAAATCCAGCTCCTTGATCTCGTTTCCATCTTCCCGGCGAAAGTCGTGGTTCAAAAGAACCATTCGGC
AACAGAGCTCCCAGATCCCTGATCGCTGGTCTTGGGAAGGTAGCCGTTTAACAAGTTG--------AGCTCGATTCTGGC
ATGGTAGGAAGGAAAGGCAGTGGCAGAGCTTGAATGCAATGTCAGGGGGGCCAGAAGCAAAGTATACATGTTAATAGGGA
CTAATGAGAATACTTTATTCTAATTATGCCCCCCTAAAAAAATTCCTTCAGGAATTTGTGTTGGGCTGGGGGGGGGGGGC
ATAGCCCCCTCAGCTATACACATAGGTCCGCCATTAAGGAAAGGTACTTGCTTCGGTCTTTTCTTCCCTGGTACGTATCA
TTTTCTGTCACTTCGTGGTGGCAGCTCTTCGTAAATAATGTGAACCCCTCATTTTGCAATTCCTAGGATCGCCAAAACAT
CAGCTCCTCGTTTTTGCACTACAACCCGTCTTAGAATTGGGAAGCTAACTTCACGGAGCTGGCCCGTTTGGCGCAGCTTC
GGCTGCTGACTTAGAGAAATCAGGAGTTGGGCGTTTGCCGAATAGGCCCTAAGAGTATGATTGGACACTCTGAAAACAGA
ACAACTTGTGATGGTTTGATAACAATTGTAATGGAAATGAACCAGGTGGAGCTTTTTTGGGGA-AATGTGGGATATGTTG
ATCATATAGGTTTACAATCTATAATGATAATACAATGATAATAGATGCTACATTGGGTAGGACACCATCGTTCCAAAATG
ACAA----------------------------------------------------------------------------
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>chr6D_392
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--------------------------------------------------------------------------AAAATA
TTGTTTGAGACCAGGTATATTTGGCTATCTATACAAATTCAACCTCAGTTTT----------------------------
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------------------------------------------------------------------GTAGT-CCAAACGA
TTTTATATAGGATTCTTTGGATTCTAATAACCTTATAAAAAT-CTACGGT--CCAAAGAGTCGTCGAGAGACTACCAAAG
TTTTCTGG---TAAAAGTATTAGTAATGATCGAAAATAAAGTAAACAGGGACGTCTTGCTTAAAAAAAAAGAAAAAAAGT
TCAAAAAAAATGCCAAATCAAGTCGGAGCCACTAGTGTGAGTGACGTGTCTCCTCCTTGTTGGCATCACGAGGAGCAACC
AAAACCACCGGTGTCCATGATATCCAAAATGTCACAAAGAAAGTGCAATAGTTTTCCCCAAAAAGTGTTAGTAACATGAA
CCAAAATGGAGATATTTTCCAT--TTTTCTAAGAAAAAATGAAAATGAAAATAAATCAAGCGGGAGGGAGCCACTGGTGT
GGTGTGAGCGTGACATGTCTC---CTCGTTGGCGCGACGAGAGGCAACCAAACCACCGGTGTCCACCAGACGACCACATC
CTCCCAGCCCGACTACGAGAGGAGGGGCAGCCTCCTCCACGCCACACACCACCACTCCTCACCGCACGCACGCACGCCTG
AGCCGATCGAGCAGACGCGCGCGAGCCCCGCACACCTCGCCGCGGGCCATGGCCATCTCAGCCGCCTCCAGCCTCGCGCT
CCACGCGGCCCCGTCCGCCACCCGCCGC------CGCAGCGTCGTCGCCTCGGCCTCGGCCGCGCGGTTCGACCGGCGCT
CGGCCGTGCTCCTCCTGCTGTCGGCCGCGGGTGCCGGGTCGTCCTTGGCGGCGGTGGCGCCGGCCGCGAACGCCGCGGGC
AGCATCGGGCTGTTCGGCATCCGGAAGAAGCTGGAGCGGGCGGAGGAGGCCGCGCGGGAGGTGGGCGAGGCGGCGGTGGA
AGCCGTGGAGGCCGGCGGGGAGGCCGTGGCGGAGGCCGGCAAGGAGGTCGCCGGGGAGGGCATGCAGCTGGCCGCCGAGG
CGGGGCTCGCCGGCGACGCGCTCGTGCAGGCCGGCGTGGTCGCCGGCGCCGAGGCGCTCGGGGTCCTCGTCGGCTTGTCC
GTAGTCAACGGCATCCTCAAGCCCGAGGCCTAGAGAGCTTG--GGCTCGGCACGTGATGTTTTTGCTGGCCCATCCGGTG
TTTGGGTTTAGTGCTTACAGAAGGAACTGGCTATCATTATTTGTTCATGACTTTGTGGTGTGACATATTTTAGTATGATT
TTATAGAGTGATGGATGCTCATGGTTCAACTATGTTATGTACGGAGTAGTATGCAACAAGATCATGCAAATTGCTTTGTA
GGGAATTTTCGCTGCATTAATGTAGACAACTTACATTGTCTCATGATGCTAAGTACCTATTCGGCAACTGCCCAACGC-A
AGAAATAATCCTCAAACCCAGCTCCTCGATCTCGCTTCCATCTTCCCGACGAAAATCGTGGTTCAAAAGAACCATTCGGC
AACAGGACTCCCAGATCCATGATCGCTAGTCTTGGGCTGGTAGCCGCTTAACATGTTT--------AGCTCGATTCTGGC
ATGGTAGGG-----------------------------------------------------------------------
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------------------------------------AGGAAAGGTACTTGCTTTGTTCTTTTCTTCCCTGGTACGAATCA
TTTTCTTTCACGTCGCGGTGGTAGCTCTTCGT-----------------------------------ATCGCCAAAACAT
CAGCTCCTCA-TTTTGCACTACAACCCGTCTTAGATTTGTGAAGCTAACTTCACGGAGCTGACTTGTTTGGCCCAGCTTC
GTCTACTGACTTTGAGAGGCCAGGAGTTGGGCAGTTG-CGAATAGACCGTAAGAGTATGATTGGACACTCTAAAAACAGA
ACAACTTGTGATGGTTTGATAACAATTCTAATGGAAATGAACCAAGTGGAGCTTGTTTGGGGA-AC-GTGGGATATATTG
ATCATATAGGTTTACAATCTACAATGG-----------TAATAGATGCTACATTGGGTAGGACACCATCATTCGAAAATG
ACAATCAACTAGCCTAACTTCGATCACTTTGACAATGAGTAATCGCAAACTTTCTAGCTCAAATGTCGTCTTCTTAACAT
GTTGAAAAGAAGCAAGCCATGACGCAATCCACAAAGGTCTTACATATCAAGAGCTTGGCATGCCAACATATAGGCGATAA
TGGTAGAACAATGACATTTCTCACCTTTCGAAGGCTCTCCAGGCGAATGAGAAGCTCTACTTCTTCTGCATCACAACATG
CATCTTGAATAGTCATGAAAG----CATGCGTCTTGCCCCACACCTCTAAAAGCAGTCCATTTGAAGACAGAAGGAACGA
CCCATCCACATTTATCTTAGCGAGCTTGGTTTGGGTAGTGTCCAA
>SNPs
-S-SSSSSSSSSS-SSSSSSSSSSSSSS---------------S-S--S---------S------S--S---------S-
-S-SS-----------S-S----SS-----------------------S-S-S-S-------------S-----------
--------S-SS-----------------------------S---S-----SS-------S---------S----S----
-S--S-------------------SSS-------S----S-S------S--------------S-S-------------S
-S--------------------------SS----S----SSS---------S---SSSSS-SSS-SSSSSS-SS------
---------S---S-----------S-------S-----------SS-SS------------------------------
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---------------------------------------------------------------------S-S----S---
-S--------SS-------SS-S------------------SS-SSSSSSSS-S--S-----S------SS----S----
S---S-SSSSS----------S----SS----S-S-SS--SSS-S-----------------S-------------S--S
-S---S-SS-------------S----------------------S---------S-S--------S-------------
---S-----SS--S---SS-S-------S--S-----------S-SS-S-S---S--S-----------S----------
S-----SS----------S-------S--S-SS------SS-----S----S-------------------------S--
---S-------------------------------------S-S------------------------------------
--------------------------------------SS----------------------------------------
-----------------------------S-------------S---------------S--------------------
-------------------S----------------------------------S-------------------------
--------------------------------------------------------------S-S--------S--S---
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-------------------------------------------------S------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------S-----------------
----------------------S-------S----------------------------------S---S----------
----------------------------------------------------------S-------------------S-
------------------------------------------------------S---------S---------------
-------------------S-------------------------------------SSSSSSSSS-----------S--
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-------------------------------------------------------------------------------S
----------------------------S-S-------------SS---S---------S--S-S-S------------S
------------------------S--S------------S----------------------S----------------
--------------------------S-------------------S---------------S-----------------
-----------------------------------------------------------S---S---------------S
-----------------------S-----S--------------------------------------------------
-----S-S------S-S----S---S----------------------S-S--------------S--S-----------
--------S---S--S---------------S-----------------------S--S---------------S-----
------------S------------S------------S-------S-------S--S----------------------
----S---------SSS--SSSSSS--------S-SS------------------------SS-S---S-----------
--SS--------------S---SS--SS-----------------
>forward_169
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---------------------------------------------------------------------ACCATACTCAC
CAAGCCACG-----------------------------------------------------------------------
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>reverse_2625
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----------------------------------------------------------------GGAATCGCCAAAACAC
CAGC----------------------------------------------------------------------------
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