>input_sequence_70114
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-------------------------ATGGCCACTGCGAACCAAGACTGCGCCGCGACGTTCCAGTTCCACGACCATCGCG
GAGGTCCGGCAGCGACGGAGCTCCACGGCCGGACGATCTCCTCCGAGCAGGAGCACGGCATCATCGTCGCCGCGCTGCGG
CACGTCGTGTCCGGCTACACCACGGCGCCGCCGGAGGTCGTCGTGGCCGTGGCGTGCGGGCGGTGCGGCATCGACGGCTG
CCTCGGGTGCGACTTCTTCGGGGCCACCGAGCCGGAGGCGGAGGCGGCGGCCGTGCCCGTGGGAGCGGCGGGAGGGGGCC
AGAGGAAGCGGCGGAGGAAGAAGAACGTCTACCGCGGCGTGCGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGC
GACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACCTTCGACACCGCCGAGGATGCCGCGCGGGCGTACGACCTCGCCGC
GCTCGAGTTCCGCGGCCCGCGCGCCAGGCTCAACTTCCCGTGCTCCGACGAGCCTCTGCGTGTGCACGGGAGCGGCAATG
GCGGTGATGGTGATGCTGGCGCGGCGCCGCAGAACGAGACTCTGACCACGCCGTCGCCGTGCAGCACGGACGCCGGCCAG
AGGACGCCGGGACAATGGCAGCTGGCTGCGGACGGGGCCGGCGACCAGCTGTGGGAAGGCTTGCAGGATCTCATGACGAT
AGATGGAGAGGGCCCATGGTTCGCGCCATTTTCGAGTCCAGCATAA----------------------------------
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>chr5D_1_TraesCS5D01G245300
GGGCTACACTCTCACAAACGGATCTAGACCACCAACACCACCGAGTCCCGCATTCCTCTATTCTGCAGTATCGTCGAGGA
TCTAAGCCGTGAGTTGTGACGGTCATCTGTTTGGCAACGTTGTTGAAAACCCTTGCGTTTCGTTGCTCCCAAATGGCCCA
TGCCGCTCCGATGATGAATGAGTCGAAGCCTCGTTTTGCCCTACCATCGATCCGTTGTATTTGGTCGAGCCACCAAGTCG
TCAAAGTCTGATCCGAGGTTGGGCACTGGATGTTGACTCTAAGCAGGTTGAAGCATGAGTGGCACACCTCTCTGGCGTAC
ACGCAGTGAGTAAGAATATGGTCAACAACTCAACATTGTCTTTGTCTTGGGATATCTAAATTTGAGGTAATTCTCCAATC
TTAAAGAAATTTCGACAACCATGTTGCAGAATAAGCTTTGCTGACGTCATCTATGCATCATTGGTAGTAATAGTAGACGT
GGCAATTAAAATGATTTGCTTAAGCTATAAAAAATCCTGACCTTATCCAACTGGAGCGGCGTACGGTCATTCGCTACGCG
CAGCTGCT-------TCGGATGAGCCCGTCGACCTTTGACTTTTCACCGTC-GACTATAGTAGTACTAGCCATCACACAC
TTGTCTCCTCTCTCCATGTTCAACCTCTCACTGACGGTCTGACCCCACAGCGAAGTCAGCCT----CCTCCTCCTCGGCT
GAACGAAC----GTAGCCACGCACGTACGTCAGCGCGCGCGTCGCG----AT----CCACTGCCCAAGAGGCCAAGACCA
TCGAGA-----AGCAGCGAGGCTCCGCGTCCACACGTTTTCCTCCTGTGCTGAAAATGGGAAGATCAACGACGGATATCC
ATCCTCCTGGCGCCGCTCTGTCAACGACATCCGCACCGCGTAGCTTTCGATGTCTCCAGGGTGGTATATAACCGCCTCCC
TT--------CGCTAGCACCTCCCGCCTCACTTCAATTTCAAGCACGTACGCCACCCTCTCTACACACACTG--------
----------------CA----GCCATGGCCACTGCGAACCAAGACTGCGCCGCGACGTTCCAGTTCCACGACCATCGCG
GAGGTCCGGCAGCGACGGAGCTCCACGGCCGGACGATCTCCTCCGAGCAGGAGCACGGCATCATCGTCGCCGCGCTGCGG
CACGTCGTGTCCGGCTACACCACGGCGCCGCCGGAGGTCGTCGTGGCCGTGGCGTGCGGGCGGTGCGGCATCGACGGCTG
CCTCGGGTGCGACTTCTTCGGGGCCACCGAGCCGGAGGCGGAGGCGGCGGCCGTGCCCGTGGGAGCGGCGGGAGGGGGCC
AGAGGAAGCGGCGGAGGAAGAAGAACGTCTACCGCGGCGTGCGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGC
GACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACCTTCGACACCGCCGAGGATGCCGCGCGGGCGTACGACCTCGCCGC
GCTCGAGTTCCGCGGCCCGCGCGCCAGGCTCAACTTCCCGTGCTCCGACGAGCCTCTGCGTGTGCACGGGAGCGGCAATG
GCGGTGATGGTGATGCTGGCGCGGCGCCGCAGAACGAGACTCTGACCACGCCGTCGCCGTGCAGCACGGACGCCGGCCAG
AGGACGCCGGGACAATGGCAGCTGGCTGCGGACGGGGCCGGCGACCAGCTGTGGGAAGGCTTGCAGGATCTCATGACGAT
AGATGGAGAGGGCCCATGGTTCGCGCCATTTTCGAGTCCAGCATAAGTGTATCTGGGATCTTTGTATAAAATTGGTGGTT
ACTGATAGTGATAGATACCAGCTGTTA-GAATAGACTAACCGAGAACCGTAGTAGTGATTTATTCGTTCAATTTGTTGAG
ACAAAGCATTGCTAGCACAGAG--------TCGTTACATTTGTTAAGCATCAGGAAGTTGTCTCTGTTTACTAACGATTG
TACTGT----------------------------------------------------------------TTTATCACCT
GAATTAAGAAACGAACGCATGCAGGGTGTTATATCATTGGTCGTAGGAAAAACCTGCCTGCCACTCAAATGGTAACTCGT
GAAAAGAATGAGGCCACTCAGATGTATTCCCTCTGTCCTCTCAAAGGTTGACTGAGTTTGTGTAAAAATATATCAGTATT
TGTGAAACCAAATAGGTATACGATGAAAATATATTTTATCATGAATCTAATGCTACTAATTTGATGGCATAAATGTTGGT
GCATTATTGTATAAATACGGTCAAACATAAAAAAGTTTGACTTTCCAACAAAGTTGAAAGTACACTCTTCAAAGGACGGA
GGGAGTATCATGTTGTCTCGTATAAAAA----------------------------------------------------
-------------------------------TACACGTCTTCTCAGAATAT-----ATAATAAACAAATAAACTAGACAT
ATAACACATGCATCAAACTATTTCTTCGTAGTAGTAATCCCTCCGTATAGAAATATATAGGTCACTAAACGCTAGTGACC
TAAACGCTCTTATAGAGAGTAATATTTAAGGACGCGGATAACTCCAGACTTAGGGCCTCTTCTGAAGTCCTCCCGCTCCA
CTCTTCACAAACTTCTCGTGTGGAGCCGAACCGAAGGATCTAGCTCCATGAAGCTAGCTTCAGGAAGCTGTGGTCGATCG
TAGTGCAAAAACACGGAGCGAGGAAGGCCCAACACCACCGAAACGGGAATCTGGAGTGAAAATGATTCATCCCCTCGTCG
GTCATGTATCGCTACGAATCGATACCACATCTCCCCTCGACGACCGTCTGGGGCTGGTTCCAGCCGGCCCAGTATGGTGC
TAGACAG
>chr5B_513
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--------------------------------AATCCTGACCTTATTCGGTTGGAGCGT-GTACGGTTATTAACTACACG
TACGCAGCTGCTTACTCCGATGAGCCAGTTGACGTTTGACTTTTCTCGGCCAGATTATTCTGGCTACCACAGTCACACAC
CTCCCCT----TCCAG-------CTTCTCTCTGACAATCTGGCCCGACAACGAAGTCAGCCT----CCTCCTC---GGCT
GAACGAAC----GTAGCCACGCACGTACGTCAGCGCGCGCGTCGCAGTCCAT----CCACTGCCCAAGA--------CCA
TCGAGA-----AGCAGCGAGGCTCCGCGTCCACACGTTTTCCTCCTGTGCTGAAAATGGGAAGATCAACGACGGATATCC
ATCCTCCTGGCGCCGCTCTGTCAACGACATCCGCACCGCGTTGCTGTCGATGTTGCCAGGGTGGTATATAAGCGCCTCCA
TGCCTCCATCCGCCAGCAACTCCCGCCTCACTTCAAACGCT----------CCACTCTCCAAGCTTTTGGGTCTCTCTCT
ACGCCCAGGACACATAGCCATGGCCATGGCCACTGCGAACCAGGACGGCGCCGCGACGTTCC------ACGACCATCGCG
GAGGTACAGCAGCGACGGAGCTCCACGGCCGGACGATCTCCTCCGAGCAGGAGCACGGCATCATCGTCGCCGCGCTGCGG
CACGTCGTGTCCGGGTACACCACGGCGCCGCCGGAGGTCGTCGTCGCCGTGGCGTGCGGGCGGTGCGGCATCGACGGCTG
CCTCGGGTGCGACTTCTTCGGGGCCACCGAGCCGGAGGCGGTGGCGGTGGCCGTACCCGTGGGAGGGGTG---------C
AGAGGAAGCGGCGGAGGAAGAAGAACGTCTATCGCGGCGTGCGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGC
GACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACCTTCGACACCGCCGAGGATGCCGCGCGGGCGTACGACCTCGCCGC
GCTCGAGTTCCGCGGCCCACGAGCCAGGCTCAACTTCCCGTGCTCCGACGAGCCTCTGCCTGGACACGGGAGCGACAATG
GTGGCGGTGGCA---CTGGCGCGGCGCCGCAGAACGAGACTCTGACGACGCCGTCGCCGTGCAGCACGGACGCTGGCCAG
AGGACGCCGGGAGAATGGCAGCTGGGTGCGGACGGAGCCGGCGACCAGGTGTGGGAAGGCTTGCAGGATCTCATGACGAT
AGATGGACAGGACCCATGGTTCGCGCCATTTTCGAGTCCAGCATAAGTGTATCTGGAATCTTTGTATAGAATTAGTGGTT
ACTGATAATGATAGATACCAGCTGTTA-GAATAGACTAACCGAGAACCGTAGTAGTGATTTGTTCGTTCAATTTGTTGAG
ACAAAGCATTGCTAGCACAGAG--------TCGTTACATTTGTTAAGCATCACGAAGTTGTCTCTGTTTACTAACGATTG
TACTGT----------------------------------------------------------------TTTATCACCT
GAATTAAGAAACGAACGCAC----GGTGTTATATCATGGGTTGTGCGAAAAACCTG----CCACTCAAATGGTAACTCGT
GAAAAGAATGAGGCCACTCAAATGT-------------------------------------------------------
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----GTATCATGTTGTCTCGTATGAAAA----------------------------------------------------
-------------------------------TACATGTCTTCTCAGAATAC-------AATAAACAAACAAACTAAACAT
ATATCACATGTATCAAACTGTTTCTTTTTAGTG-----------------------------------------------
------------------GTAATATTTAAGGACGTGAATAACTCTAGATTTAGGGCCTGTTCTGAAGTC--CCCGCTCCA
CGCTTCACAAACTTCTCGTGCCGAGCCGATTCGAACGATCTAGCTCCATGAAGCTAGCTTCGGGAAGCTGTGGTCGATCG
TAGTGCAAAAACCTGGAGCGAGGAAGGCCTAAGACCAC------------------------------------------
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>chr5A_562
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-AGCTGCT-------ACGGATGAGCGAGTTGACCTTTGACTTTCTTCCGTCTGACTATAGTA-TACTAGCCATCACACAC
TTGTCTCCATGTCCAG-------CCTCTCTCTGACGGTCCGACCCCACAACGAAGTCAGCCCCCTCCCTCCTC---GGCC
GAACGAACGTAGGTAGCCACGCACGTACGTCAGCGCGCGCGTCGCAGTCCATCCATCCACTGCCCAAGA--------CCA
TCGAGAAGCAGAGCAGCGAGGCTCCGCGTCCACACGTTTTCCTCCTGTGCAGAAAATGGGAAGATCAACGACGCATATCC
ATCCTCCTGGCGCCGCTCTGTCAACGACATCCGCGCCGCGTTGCTGTCGATGTTCCCAGGGTGGTATATAACCGCCTCCC
CT--------CGCCAGCGCCTCCCGCCTCACTCCAATTTCAAGCACGTACGCCACCCTCCAAGCTCTCAGGCCTCTCTCT
CTCCAGTCTCTACGCACA----GCCATGGCCACTGCGAACCAGGACTGCGCCGCGACGCTCC------ACGACCATCGCG
GAGGCACGGCAGCGACGGGGCTCCACGGCCGGACGATCTCCTCCGAGCAGGAGCACGGCATCATCGTGGCCGCGCTGCGG
CACGTCGTCTCCGGGTACACCACGGCGCCGCCGGAGGTCGTCGTGGCCGTGGCGTGCGGGCGGTGCGGCATCGACGGCTG
CCTCGGGTGCGACTTCTTCGGGGCCGCCGAGCCGGAGGCGGCGGCGGCGGCCGTGCCCGCGGGAGGGGTG---------C
AGAGGAAGCGGCGGAGGAAGAAGAACGTCTACCGCGGCGTGCGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGC
GACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACCTTCGACACCGCCGAGGAGGCCGCGCGGGCGTACGACCTCGCCGC
GCTCGAGTTCCGCGGCCCGCGCGCCAGGCTCAACTTCCCGTGCTCCGACGGGCCCCTGCGTGAGCACGGGAGCGGCAATG
GCGGCGATGGTGACGCTGGCGCGGCGCCGCAGAACGAGACTCTGGCCACGCCGTCGCCGTGCAGCACGGACGCCGGCCAG
AGGACGCCGGGAGAGTGGCAGCTGGGTGCGGGCGGAGCCGGCGACCAGCTGTGGAAAGGCCTGCAGGATCTCATGACGAT
AGATGGAGAGGACCCGTGGTTCGCGCCATTTTCGAGTCCAGCATAGGTGTATTTGAGATCTTGTATATAAGGA--TGATT
ACTGATAGTGACAGATACCAGCTGTTGGGAACAGACTAACTGAGAAACGTAGT---GATTTATTCGTTCGATTTGTTGAG
ACAAAGCATTGCCAGCACACAGTCGTTAGTTCGTTACACTTGTTAAGCATCACGACTACTCCCCCTCCCTCCGTAAACTA
TTATAAAAGCATTTTTATCATTATTTTAGCTATCAAAACGCTTTTATATTAGTTTATAAAGAAAGCACTGTTTATCACCT
GAATGAAGAAATGAACGCACT----GTGTAATATCATGGGTTGTACGAAAAACCTA----CCACTCAAATGGTAACTCGT
GAAAAGAATGAGGCCACTCAAATA--------------------------------------------------------
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-----TATCATGTTGTCTCGTATGAAGATACTCCTTTTGTAAACTAATATAAGAGCATTTAGATCACTATTTTAGTGTTC
TAAACGCTTTTATATTAATTTATAAAGGGAGTACATGTCTTCTCAGAATATTAATTATAATAAACAAACAAACTAGACAT
ACATCACATCTATCGAACTATTTCTTTTTAATA-----------------------------------------------
------------------GTAATATTTGAGGACGTGAATAACTCTAGATTTAGGGGCCGTTCTGAATTCCTCCCACTCCA
CGCTTCACAAACTTCTCGTGCGGAGCCAAGTCGAACGATCTAGCTCCATGAAGCTAGCTTCAGAAAGTTGTGGTCGATCG
AAGTGCAAAACCCTGGAGTGAGGAAAGCCCAACACCATCAGAACGAGAATCTGGAGTGAAAATGATTCATCCCCTC----
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-SSS-------SS-------S---SS----S--
S-------------------------S--S---------------S----------------------------------
--------SSSSS-SSSSSSSSS------S-------------------S-----------------------SSS----
---------------------------------------------S-----------------------SSSSSSSS---
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-----------------------------------------S---S-------SS-------------------------
-------------S---------------------------------------------SSSS-S-S--SSS--------
------------------------------------------S-------------------SSSSSS------------
-----S--------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
-----------------------------------------S-----------------------S--S-SSSSSSSSS-
----------------------------------------------------------S---------------------
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--------------------------------------------------------------S-----------------
----S--------S------------------------------------------------------------------
------------S------------S---------S--------------------------------------------
-----------S-------------------------------------------------------------S------
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----------------------------------------------------S---------------------------
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-------------------SSSSS-------------S---S---S----------SSSS--------------------
--------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------------S--------------------------------------------------------
-----------------------------------S--------------------------------S-----------
---S------S---------------SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS----------------S-S-------S---S---------S---------------------
-S------------------S--------SS----S--------------------------------------------
------------SS-------------------------SS----S------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_179
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-------------------------------------------------------------------------------A
TGCCGCTCCGATGATGAAT-------------------------------------------------------------
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>reverse_2122
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-----------------------------------------CGTAGGAAAAACCTGCCTGC-------------------
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