>input_sequence_70113
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-------ATGGGAGCGGGTCATAACGGCGTGTCGGCGCTCGGCCTTGTCCTGGCCGTGGCGGCCGCGCTGCTGGTGTGCC
AGTGCGCGGCGCAGGCGCAGGCGCCGGCGCAGGCT------------------CCATCTGGTGGCAGCGGGGGCTCTGGT
TGCATGCCGGAGCTCGTCAGCCTGTCGCCGTGCATGGGCTACATGTCGGGCAACGCGACGGCGCCCGGGGAGCCGTGCTG
CGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCGGTGCCTCTGCGCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCG
TCGCCCTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAGGGTCCAGGCGCCGCCCGCCAGCCAGTGCGACTGT
AAGTTCACATTGCGCAAGTACGAAC---------------------AACAGCACGAGT--AGAAAATAACGTCGTGCCAT
T-----CGTGCAGCCATGGGTGTTCCGATGTCTTCTCCGGCGACGCCCTACGATCCCGACGTTACCCCTGCAGGTACGTG
CAGCA----GAACCTCCTGCAAATGTTTTGTAATAGGCCCGTGGAGCTGGTCGGAGCGCGTGACGGTGAGCTAATCGGAG
CGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGCCACTCCGACGCCTCAGTACTCCCACGGGAACGTC
AACAGAGCAGGAGCAGGAAGGAGAAGTCTGGCCTTCGTCGTCGCCGTCGTAGCAATAGCTCTGATTCGTGGACCCTGA--
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>chr5B_1_TraesCS5B01G436700
GAGCTGGGATTTGCGTCGCTGTATCTGCAGATCACAAAAAAAATTGGAACAGACAAGAACTTGCTTGGTTAATTAGAGGT
CAAATTGTGCAG---------TGAAAAGAAATTGTTGTGTGTAGAGACGGACCTCTGCAGACGAGCGGGACGGAGAGCGA
CTTGCAGACCCTGGGGAGGGAGATGGCGAGGGTGCGGTTGATGGGGAGGCCGAAGGGCACGTTGCCGGTGAGGATGAGGC
AGGCGCAGTCGGCGCCGGTGCGGACCACCCCGGCCACCGCCCTGCAGCACTGCAGCGTCGGCGAGCCCCCGCCGTTGGTG
CTCCCCGTCACGAAGTTGAGGCACGGCGTGAACGTGCTGATCAGCGACGCCGTGCACGACGTCGCCACCCCCGCCTGCCC
CGACACCGCCGCCGGCAGCACCGCCACGGCCACGGCCAGCACCAGCACCATCGCCGCCACCGCGCCCATCGCACCGTCAC
GTGTCATAGCGGCATATACGCCTTAAAAATGTACAG---TTTTTGAAGGAGCAAATTAAACTGTGCCAGATCTCGCGCGC
CTTCGCGTCTTATATATGCATGTGGGTCTCGTGTATAC---------------------------CTAGTGTGGTTAAGA
ATGTTTCAGGTGGTAGATGAGCGTTTGGCCATGGTGGTTGCGCGAACCGCTTGTGCTGATGCGTTTAGGTGATCAGGACG
TCAGGTAGCTAGGACGATTGTGACCAGATGAATCCACAAAGTTTGCAGGTGCACTGCTCTCTCTGTCTCGGAGACTCTGA
CTGACTCGCCATGAAAGCGAAGTCCAAAGATTTGGCGAGAAGTTGACCGAACCATGGCGAATGCATATGGAC----AGCC
TGGGCTCACCGGCGCGACCAACCTTAACTAACCG--CTATTATGGACCACGGTCTGTCAGTGTCAAGAACGAGAATGGTT
CTTGCTACAAAATCAGCGAACTGACCATTC--CCAGTGCCACGCATAGTTCGCGCATCAAAGGGGAGCACGAATCACAAC
AAGTCCAATGGGAGCGGGTCATAACGGCGTGTCGGCGCTCGGCCTTGTCCTGGCCGTGGCGGCCGCGCTGCTGGTGTGCC
AGTGCGCGGCGCAGGCGCAGGCGCCGGCGCAGGCT------------------CCATCTGGTGGCAGCGGGGGCTCTGGT
TGCATGCCGGAGCTCGTCAGCCTGTCGCCGTGCATGGGCTACATGTCGGGCAACGCGACGGCGCCCGGGGAGCCGTGCTG
CGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCGGTGCCTCTGCGCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCG
TCGCCCTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAGGGTCCAGGCGCCGCCCGCCAGCCAGTGCGACTGT
AAGTTCACATTGCGCAAGTACGAAC---------------------AACAGCACGAGT--AGAAAATAACGTCGTGCCAT
T-----CGTGCAGCCATGGGTGTTCCGATGTCTTCTCCGGCGACGCCCTACGATCCCGACGTTACCCCTGCAGGTACGTG
CAGCA----GAACCTCCTGCAAATGTTTTGTAATAGGCCCGTGGAGCTGGTCGGAGCGCGTGACGGTGAGCTAATCGGAG
CGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGCCACTCCGACGCCTCAGTACTCCCACGGGAACGTC
AACAGAGCAGGAGCAGGAAGGAGAAGTCTGGCCTTCGTCGTCGCCGTCGTAGCAATAGCTCTGATTCGTGGACCCTGACA
CCTGCTGAAATGGCCACGGGGCGTGT--------AAATGTACGATCGGACACAGCAGAGACCGAGACCCCGTTAAGCTTG
AATGAATGTTTTTTTTAGCATGGCTTGAATGAATGATGGGGAACGGGGAGTCTCGTTGGTCATTGCACTCAGGGCACTAA
CGGCAACTCCAACGCGTTGACCCATTTCGTCTGCGTGCGTCCGTTTAAATCGGCGCGTTCGGTCGGCGTGGACAAAAAAA
TGGTCAAACGCGTCGATCTAAATGGACGTGCGTCCGCTTTTCATCCGCCTGCCGACTTCCAGGCTTATTTTTAAGCCGGA
TTTGCATCGGCGCAGACACGAGACGGACGCACGCTCGCCCGCCTACTCCTTCCACTGGCTCGCTCGTCGGTGGCACATTG
GTCATCCTCTCCCATTCCAACAGCAAACCCCCGCCTGCCTTCTTCATCGTTGATGTCGCCGCCCATTTTTTCGGTGCCTC
TGCCAGCTGCCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
ACGCCGCCACCTCCCACGTCGCCCGCCACCATCGTCTTGTCGCCGGGAACCGAAAGCTTCCCACTCCCACTCCCCCGACA
CAACCGCGACCGCAAAGCCGCCTCGCGGCCCCGACCAAATCCTTCGTCCTGACACCGGCACACTCGTCGGACGCCGGCAC
GCCGCCAGAGCAGCTAGCTGGTCCAAGGGCGGCGCGACTCCTTTCGTCGGCCGGCTTCTTCGTCGACGCCCGCAAACTGT
TCGACAGTTTGCCAAGGTACAAATTGGACTCCGCCGACGAGTTCTT
>chr5D_1
GAGCTGGGATTTGCGTCGCTGTATCTGCAGATCACAAGAATGCG----ACAGACAAGAACTTGCTTGGTTAATCAGAGTT
CAAATTGTGCAGTAAAAAAACTGAAAACAAACTGTTGGAAGTAGACACGGACCTCTGCAGACGAGCGGGACGGAGAGCGA
CTTGCAGACCCTGGGGAGGGAGATGGCGAGGGTGCGGTTGATGGGGAGGCCGAAGGGCACGTTGCCGGTGAGGATGAGGC
AGGCGCAGTCGGCGCCGGTGCGGACCACCCCGGCCACCGCCCTGCAGCACTGCAGCGTCGGCGAGCCCCCGCCGTTGGTA
CTCCCCGTCACGAAGTTGAGGCACGGCGTGAACGTGCTGATCAGCGACGCCGTGCACGACGTCGCCACCCCCGCCTGCCC
CGACACCGCCGCCGGCAG------------CACGGCCAGCACCAATACCAACGCCGCCGCCGCGCCCATCGCACCGTCAC
GTGTCATAGCCCGATCATACAACTGAAATGCACCACAGTTTTTTGAATGAGCAAATTACACTGTGAAGGATCCCGCGCGG
TTCCGCTGCTTATATATGCATGTGGGTGATGGGAAATACACTTTGGTAGTTGTCGTGTGTGTAAACTAGTGTGGTTAAGA
ATGTTTCAGGTGGTAGATGAGCGTTTGGCCATGGTGGTTGCGCGAACCGCTTGTGCTGATGCGTTTAGGTGATCAGGACG
TGAGGTAGCTGGGAC---TGTGACCAGATGAATCCGCAAAGTTTGCAGGTGCACTGCTCTCTCTGTCTCGGAGACTCCGA
CTGACTCGCCATGAAAGCGAAGTCCAAGGATTTGGCGAGAAGTTGACCGAACAATGGCGAATGCATATGCAAAAATAGCC
TGGGCTCACCGGCGCGACCAACCTTAACTAACCG--CTATTATGGACCATGGTCTGTCAGTGTCAAGAACGAGAATGCTT
CTTGCTACAAAATCAGAGAGCTGACCATG---CCAGTGCCACGCACAGTTCGCGCATCAAAGGCGAAG--GAATTACAAC
AAGTCCAATGGGAGCGGATCATAACGGCGTCTCGGCGCTCGGCCTTGTCCTGGCCGTGGCGGCCGCGCTGCTGGCGTGCC
AGTGCGCGGCACAGGTGCCGGCGCCGGCGCCGGCT------------------CCATCTGGTGGCAGCGGGGGCTCTGGT
TGCATGCCGGAGCTCGTCAGCCTTTCCCCGTGCATGGCCTACATGTCGGGCAACGCAACGGCGCCCGGGGAGCCGTGCTG
CGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGAAATGCCTCTGCGCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCG
TGGCCCTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAGGGTCCAGGCCCCGCCCGCCAGCCAGTGCGACTGT
AAGCCCACACTGCGCAAGTACGAAC---------------------AACACCGCAAGT--AGAAAATAACGTCGTGCCAT
TTGTGCCGTGCAGCCATGGGTGTTCCGATGTCTTCTCCGGCGACGCCCTACGATCCGGACGCTACGCCTGCAGGTACGT-
--GCA----GAACCTTCTGCAAATGTTTTGGAATAGGCCCGTGGAGATGATCGGAGCGCATCACGGTGAGCTAATCGGAG
CGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGCCACTCCGACGCCTCAGTACTCCCGCGGGAATGTC
GACA------GAGCAGGAAGGAGAAGTCTGGCCTTCGTCGTCGCCGTCGTAGCAATAGCTCTGATTCGTACACCCTGACA
CCTGTTGGATTGGCCACGGGGCCTGT--------ATCT---------GACGCAGCAGAGGCAGAGACCCCGTTAAACTTG
AATGAATGTTTTT-TTAGCAAGCCTTGAATGAA-----------------------------------------------
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>chr5A_1
GAGCTGGGATTTGCGTCGCTGTATCTGCAGATCACAAGA--------------------CTTGGTTGGTTAATCAGAGTT
CAAATTGTGCAGTAAAAAAACTGAAAATAAATCGTTGTAAGTAGAAACGGACCTCTGCAGACGAGCGGGACGGACAGCGA
CTTGCAGACCCTGGGGAGGGAGATGGCGAGGGTGCGGTTGATGGGGAGGCCGAAGGGCACGTTGCCGGTGAGGATGAGGC
AGGCGCAATCGGCGCCCGTGCGGACCACCCCGGCCACCGCCCTGCAGCACTGCTGCGTCGGCGAGCCCCCGCCGTTGGTG
CTCCCCGTCACGAAGTTGAGGCACGGCGTGAAGGTGCTGATCAGCGACGCCGTGCACGACGTCGCCACCCCCGCCTGCCC
CGACACCGCCGCCGGAAG------------CACGGCCAGCACCAGCACCATCGCCGCCGCCGCGCCCATCGCACCGTCAC
GTGTCATAGCCCGATCATACAACTGAAATGCACCACAGTTTTTGAATGA--CAAATTAAACTGTGCAGGATCCCGCGCGG
TTCCGCTGCTTATATATGCATGTGGGTGATGGTGGG--------------TGTCGTGTGTGTAAACTAGTGTGGTTAAGA
ATGTTTCAGGTGGTAGATGAGCGTTTGGCCATGGTGGTTGCGCGAACCGCTTGTGCCGATGCGTTTAGGTGATCAGGACG
TCGGGTAGCTAGGACGATTGTGACCAGATGAATCCAGAAAGTTTGCAGGTGCACTGCTCTCTCTGTCTTGGAGACTCTGA
CTGACTCGCCATGAAAGCGAAGTCCAAGGATTTGGCGAGAAGTTGACCGAACAATGGCGAATGCATATGCAAAAATAGCC
TGGGCTCACCGGCGCGACCAACCTAACTAATTGCTACTATTATGGACCATGGTCTGTCAGTGTCAAGAAAGAGAATGGTT
CTTGCTACAAAATAAGAGAGGATATGTGCGTACCAGTGCCACGCACAGCTTGCTCATCATACACAAGGAAGAATTACAGC
AGGTCCAATGGGAGCGACTTACGCCAACGTCGCGTTGCTCGGCCTTGTCCTGGCCGTGGCGGCCGCGCTGCTGGCGTGCC
AGTGCG------------------CGGCGCAGGCT------------------CCATCTGGTGGCGGCGGCGGCTCTGGG
TGCATGCCGGAGCTCGTGAGCCTGTCGCCGTGCATGGGCTACATGTCAGGCAACGCGACGGCGCCCGGGGAGCCGTGCTG
CGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCGGTGCCTCTGCGCGGTGCTTGGCGGCACGGCGGCCACGCTCGGCG
TGGCCGTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAAGGTCCAGGCCCCGCCCGCCAGCCAGTGCGACGGT
AACTTCCAATAGCTCAGAAAGGAGTGGTCTGGAAAATCTACTGCGAAACACCACGGGT--GGACAATAACGTCGTGCCAT
TT-----GTGCAGCCATGGGAGCTCCGATGTCTTCTCCGGCGGCGCCCTACGATCCCGACGTGCCCCCTGCAGGTACGT-
--GCATGCAGAACCTCCTCCAAATATTCTGTACACAGGCCGTGGAATTTACGTG-------------GAGCTCATGGGGG
CATCATTTTCTGACG--------GACGCAGGGTCTGGATCGAAGGCCACTCCAACACCTCAGTACTCCCACGGGAACGTC
AACG------GAGCAGGAAGAAGAACTCTGGCCTTTGCCGTCGCCGTTGTAGCAATCGCTCTGACAC-TGGTTCCTGAGA
TCTTTTGAATCGGTCCCGGGCCTGTAAATTAC------------------------------------------------
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>chr5A_628
GGT-----------------------------------------------------------------------------
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-----------------------------CATGGTGGTTGCGCGAACCGCTTGTGCCGATGCGTTTAGGTGATCAGGACG
TCGGGTAGCTAGGACGATTGTGACCAGATGAATCCAGAAAGTTTGCAGGTGCACTGCTCTCTCTGTCTTGGAGACTCTGA
CTGACTCGCCATGAAAGCGAAATCCAAGGATTTGGCGAGAAGTTGACCGAACAATGGCGAATGCATATGCAAAAATAGCC
TGGGCTCACCGGCGCGACCAACCTAACTAATTGCTACTATTATGGACCATGGTCTGTCAGTGTCAAGAAAGAGAATGGTT
CTTGCTACAAAATAAGAGAGGATATGTGCGTACCAGTGCCACGCACAGCTTGCTCATCACACACAAGGAAGAATTACAGC
AGGTCCAATGGGAACGACTTACGCCAACGTCGCGTTGCTCGGCCTTGCCCTGGCCGTGACGGCCGCGCTGATGGCGTGCC
GGTGCG------------------CGGCGCAGGCCGAGGCGCCGGCGCCGGCGCCCTCAGGGGTCAGCGGGGGCTCCGGG
TGCATGCCGGAGCTCGTGAGCCTGTCGCCGTGCATGGGCTACATGTCGGGCGACGCGACGGCGCCCGGGGAGCCGTGCTG
CGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCAGTGCCTCTGCGCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCG
TCGCCCTGGACGGTGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAGGGTCCAGGCGCCGCCCGCCAGCCAGTGCGACGGT
GAGTCCACATTGCGCAAGTACGAAC---------------------GACACCACAAGTGCAGAAAATAACGTCGTGCCAT
TTGTGCCGTGCAGCCATGGGCGTTCCGCTGTCTTCTCCGGCGACGCCCTACGATCCAGACGCTACGCCGGCAGGTACGT-
--GCA-GCAGAACCTCCTGCAAACGTTTTGGAATAGGCCCGTGGAGATGATCGGAGCGCATGGCGGTGAGCTAATCGGAG
CGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGCCACTCCGACGCCTCAGTACTCCCGCGGGAACGTC
AACA------GAGCAGCAAGGAGAAGTCTGGCCTTCGTCGTCGCCGTCGTAGCAAGGGCTCTCGTTCGTGGACCCTGACA
CCTGTTGAGTTGGCCACGGGCCTGTAAATGTACGATCG---------GACATGGCAGAGGCCAAGACCCCGTTATGCTTG
AATGAATGTTTTT-TCAGCATGGCTTGAATGAACGGTGGGGAACGGGGGATCTCGTTGGTCATTTGCACT----------
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>SNPs
-------------------------------------S--SSSSSSSS-------------------------S----S-
---------------------------S----------SS-----S----------------------------------
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------------------SSSSSSSSSSSS----------------------------S---------------------
----------SSS--SSSSSSSS-S---SSSSS--S------------------------------SS----S------S
S-S---SS-------------------SSS-S-S-SSS------------------------------------------
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---------------------------S------------------------S----------------S-S--------
-------------------------------------------------S------------------------------
----------------S--S--------SS---------------S-----------------S---S-S----S-----
-----------------S------------S-------------------------------------------S-----
----------S----S--S-------------------------------------------------------------
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--------------------------------------------------S-----------------------------
-------------------------------------------------------------------------------S
SS--------------------------------------------S--S---------S--------------------
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----SSSSSS----------------------------------------------------------------------
----S----S------------S------------SS-SSSSSSSSS------------S--------------------
-------------S-------------------S-S------------SS--------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_496
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----------------------------------------------------------------------------TCAC
GTGTCATAGCGGCATA----------------------------------------------------------------
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>reverse_1767
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------GCAGGAGCAGGAAGGAGAAG------------------------------------------------------
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>forward_1647
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---------------------------TTGTAATAGGCCCGTGGAGC---------------------------------
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>reverse_2678
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-------------------------------------AATCCTTCGTCCTGACACCG-----------------------
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