>input_sequence_70111
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------------------------------------------------------------------ACCTCACCAGCAGC
TACTTAGTAGTAGTAAAGGCTTGATTTACAGAATTGGCACCAAGAGAGCCAGAGTCTGAATCAAAAGCATTCGATCTCCT
TTGTTCTCTAAAGAATGGCGGCTCCGCCACCTCCCGCCTTCACGGACGACGACGAGGATATGGACGCCGTCGACCTGTCG
CTGACGCTCGCTCACACGCCGTGGCCGGCGTCACCGTCGTCTCCTCCGGCTGCTTCATCCGGCGGTGGCAATGGCAGTCG
CAGTGGCAAT------GGTGGTCGTGGTGGCGTGAGGCTGTTCCCCTGCCTCTTCTGCAACAAGAAGTTCCTCAAGTCGC
AGGCGCTAGGCGGGCACCAGAACGCGCACAAGAAGGAGAGGAACATCGGCTGGAACGCGCACCTCTACACCACCCCCATC
AACACCAACTCAGCCGCTCCCAG------C---AACCACCAGACGATGTACCCCATCCAGGTCTCCCACTCCTGCCAGCA
CCAGGGGTACCCCCACGTCGCCGACGGCGGCTCGCCGGGGGGCAGCTGGTGGCGCGACCAGGACGGCGACAAGAAGCAGC
AACAGACGAGGAAGGTCGACCTTAACCTCAAGCTCTAGCTACCTAGCTCTGTCCTTTTCCTTGTTATTATTGTTATTATT
GTTATTA-------------------TTTTCCTCTCTTTCTCTTCTCCCCTTTTAGTAG----TGGTGGGTACTTGGTTA
ATGAGTGTACCTGATTGTAC----------CGAGCGTGCAATTGATGATAATAAA-------------------------
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>chr5A_1_TraesCS5A01G030700
ACCTTTTGATTACAACATGAAATAGGTAGATAACTTTCAGTTGAACATCCTGATTTGCTTGGTTTCTTGATTTGGTAAAG
TCGATCGAGATTTATAGCCTAGAAATTTGTATATGAGTGCTTTGGAGTTCAAATTAAGAGGAGAATCCAAGTTATGCTTG
TTAATTTACCTAAACATACATATATTTTTCGGATATTCAAGAGCCGAGGAAAAAACTCATTTTTTAGGTTTATAATAAAA
GGCCCCAGGTTTTACTTTCGCCCCGGACCCCCAAAATGTCAGGACCAGCCCTGCTAGTAAGTAAGAAGTCACTAGAATTC
ATAACGTGTAGGATGGGGCTAGAAGTCTAGGTCGGGGACTGCATCG----ATCTGCCACCGAAAAATAGTGGGGGGC---
-CTTGCACGCTGTGACTCACGCCTATTGCTATCAGCGCAACACTAGCACACACCGCCCGCCATCGGACACGACCCTCTCC
TCCCTCT-CCGCCGCTTCAGTTTTCAAAGCCCTCCCTGCAAGCCGTGGAGTGTCGAGGGCCTCACCGTTTCCTTCATCAA
TGCCACAAAATAAAGGGGGCGGGGAGGGGGGGGGGGTGGCTCTAGGGTATCTGCCTC-GATGGCCGATGCTAGGACCTAC
CAAAACATTTTGTTCTGTCTGTTGCATTCCTTGTAGTCAATAATATGAAACCATAACCCATTTTTTCA-TAGATAAGGAT
GGTCATATTCCAAAAGCTACAACAACGAACACATAGACTATATGATATTGATCACTAGTAC---GTACTAGGTACCAACT
ATATATGTGATCTCTGTAGCAATTATGTTGGTT------------CAGTTCCTTCAGGGTGAGGGCAGCAGTAGTAGGCA
CCCAACTTGGATGTCGTCTTCCTCCGCAGCTACAGCCATGGTGACCCACCCCGGCAATAATGCAACTCTCCCAGATTTAG
GACGTGGTCCGCTTCCCTTTTATGCCCCGTCCTATAAACACACACACACACACCCAAGCAGAGCTCACCTCACCAGCAGC
TACTTAGTAGTAGTAAAGGCTTGATTTACAGAATTGGCACCAAGAGAGCCAGAGTCTGAATCAAAAGCATTCGATCTCCT
TTGTTCTCTAAAGAATGGCGGCTCCGCCACCTCCCGCCTTCACGGACGACGACGAGGATATGGACGCCGTCGACCTGTCG
CTGACGCTCGCTCACACGCCGTGGCCGGCGTCACCGTCGTCTCCTCCGGCTGCTTCATCCGGCGGTGGCAATGGCAGTCG
CAGTGGCAAT------GGTGGTCGTGGTGGCGTGAGGCTGTTCCCCTGCCTCTTCTGCAACAAGAAGTTCCTCAAGTCGC
AGGCGCTAGGCGGGCACCAGAACGCGCACAAGAAGGAGAGGAACATCGGCTGGAACGCGCACCTCTACACCACCCCCATC
AACACCAACTCAGCCGCTCCCAG------C---AACCACCAGACGATGTACCCCATCCAGGTCTCCCACTCCTGCCAGCA
CCAGGGGTACCCCCACGTCGCCGACGGCGGCTCGCCGGGGGGCAGCTGGTGGCGCGACCAGGACGGCGACAAGAAGCAGC
AACAGACGAGGAAGGTCGACCTTAACCTCAAGCTCTAGCTACCTAGCTCTGTCCTTTTCCTTGTTATTATTGTTATTATT
GTTATTA-------------------TTTTCCTCTCTTTCTCTTCTCCCCTTTTAGTAG----TGGTGGGTACTTGGTTA
ATGAGTGTACCTGATTGTAC----------CGAGCGTGCAATTGATGATAATAAACAAGTAGTTGTTCCATTGCCGACTA
GGCGCCGGCCGGACATCTATATA---------------------------------------------------------
-------------------------------------------GTGTTGTTTTCAGTTTCTCCCAAGTTCTACAAAAAAA
AAACCTTAAAAGGGAGTGCCAAAAAGATGAAAAAACAAACAAATGTAGTGCAATGTTACAGCAAATAATATTG---AAAA
TTTCTTCAAATAGTTTTTTTAATAATCACCTGGGGAGAGGATCTA-------------------TACTCAAAGGTGGCCA
TGTATGG----------------------------------------------ATGGCAGTTGCATGTTTGAGCGTGAGA
AGAGGTACGTAGTATTAAATCCACCATGACATGGCAACGACCTGGATTCTTTAGTCT--------ATAAGTCCAAAGAGA
GAAATCGGCAACAATGTTCCTAATGGT-AGAGGCCAAAGAGTGAGTGTCGTGCTGGAGGACCTGAGCATCCCTAGAATCC
CAAATTTTCTATAGAATCGAAAAACAAAAAAAGGAACCGATGGCCATAAGTCCGTTGTCGAGGCCATTTGGTGTTGTGGT
GTAAATGATTGTACAATTTATATTTTGCAAGAGAAACAACAGCCCATCTATTGCTATAGCTAAGCATTTGTGTTTTGTTC
ATTCTTCCTAATGCATAGTTGATCAGCAGCTACCACACATAATTGTCAAACATTTT-----AATTAACTCCAAATTAAGT
GGCAATTGCTCGAGAGCTCTTTCCAACGGTGATCTAAATTATACTGTAAATTTCTTATTTGCTTGAGTTTTGAATCTATA
GTAAAAATGTAATTTAAGGTAGCATTTTTTTTAATAAAAGTGTTGTGCTAAATCAGCGACAATTAATATGGATCAGAGGG
AGTATCAAAATTGTGCAATATGCATTGCTCAATTGTGAGTTAAGATATGTGGACATGAACTTTTCTCCCCCAATATCTAA
AATTCTTATGATTTACTTTGAATTATCAGGCGTTCTAATCAACTGTAGCATGAATCTGACAAGTGGGTCCAAGCTTTCAG
AATGTACAACAAATCTTGTTGATTGTTTTTCAACAAG
>chr5B_298
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---------------------------------------------------------TAAGTAACAAGTCACTCGAATCC
ATAACAGGTAGGATGGGGCTAGAAGCCTAGGTCAGGGACTGTGTCTTCAAATCTGCCGCCAAAAACTAGGGGGGGGGAGG
GCTTGCACGCCGTGACCCACGCCTACTGCCATCCGCGCAACAGTATCACACACCGCCCGCCATCGGACACGACCCTCTCC
ACCCAAAGACGCCGCTTCAGTTTTCAAAGCCCTCCCTACGAGCCATGGAGTGGCGAGGGCCTCGCCGCTTCCTTCATCGG
TGGCACAAAATAAAGGGGGCAGGGA---GGGGGGGGTGGCTCTAGGGTATCTGCCTCAGAGGGCCGATGCTAGTACCTAC
CAAAATGTTTTGTTTTGTCTGTTGCATTCCTTGTAGTCAATAATATGAAACCATAACCCATTTTTTG-GTAGATAAGGAT
GATCATATTCCAAAAGCTACAACAACAAACACATAGAGTACATGATATTGATCACTAGTACTACGTACTAGGTACCAACT
ACATATGTGATCTCTGTAGCAATTATGTT-GTT------------CAGTTCCTTCAGGGTGAGGGCAACAGTAGTAGGCA
CCCAACTTGGATGTCGTCTTCCTCCGCAGCTACAGCCATGGTGACCCACCCTGGCAATAATGCAGCTCTCCCAGATTTAG
GACGGGGTCTGCTTCCCTTTTATGCCCCGTCCTATAAACACACACACACACCCACAAGCAGAGCTCACCTCACCAGCAGC
TACCTAGTAGTGGTAAAGGCTTGATTTACAGAATTGGCACCAGGAGAGCCAGAGTCTGGATCAAAAGCATTCGATCTCGT
TTGCTCTCTAAAGAATGGCGGCTCCACCACCTCCCGCCTTCATGGACGACGACGAAGATATGGACGCCGTCGACCTGTCG
CTGACACTCGCCCACACGCCGTGGCCGGCGTCACCGTCGTCTCCTCCGGCTGCTTCATCAGGTGGTGGCAATGGCAGT--
----GGCAAT------GGTGGTCGTGGTGGCGTGAGGCTGTTCCCCTGCCTGTTCTGCAACAAGAAGTTCCTCAAGTCGC
AGGCGCTAGGGGGGCACCAGAATGCGCACAAGAAGGAGAGGAACATCGGCTGGAACGCGCACCTCTACACCACCCCCATC
AACACCAACTCAGCCGCTGATGCCATGCCC---AACCACCAGACGATGTACCCCATCCAGGTCTCGCACTCCTGCCAGCA
CCAGGGGTACCCCCACGTCGCCGACGGCGGCTCGCCGGGGGGCAGCTGGTGGCGCGACCAGGACGGCGACAAGAAGCAGC
AACAGCCGAGGAAGGTCGACCTTAACCTCAAGCTCTAGCTACCTAGTTCTGTTATTTTCCTTTTTATTATTATATTATTT
TCCCCCCTCTCTTT-TTTAGTCGATGTTTTCCTCTCTTTCTCTTCTCCCTTTTTAGTGT----GGGTGGGTACTT-GTTA
ATGAGTGTACCTTGTGCTGATTGTACCGATCGAGTGTGCAATTGATGATAATAAACAAGTAGTTGTTCGATTG-------
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>chr5D_387
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----------------------------------------------------------------------GGGGGGC---
-TTTCCACGCCGTGACCCATGCCTACTTCTATCCGCGCAACACTAGCACACACCATACGCCATCGGACACGACCCTCTCC
GCCCGAAGCCGCCGCTTAAGTTTTCAAAGCCCTCCCTGAGAGCCATGGAGTGGCGAGGGCCTCGCCACTTCCTTCATGAG
TGGCACAAAGTAAAGAGGGCGTGGA---GGGGGT--TGGCTCTAGGGTATCTGCCGC-GAGGGCCGATGCTAGGGCCTAC
CAAAACGTTTTGTTCTGTCTATTGCGTTCCTTGTAGTCAATTATATGAAACCATAACCCATTTTTTTCGTAGATAAGGAT
GGCCATATTCCAAAAGCTACAACAACAAACACATAGAGTACATGATATTGATCACTAGTACTA-------GGTACCAACT
ATATATGTGATCTCTGTAGCAATTATGTT-GTTCAGTTCCTTGCCCAGTTCCTTCAGGGTGAGGGCAGCAGTAGTAGGCA
CCCAACTTGGATGTCGTCTTCCTCCGCAGCTACAGCCATGGTGACCCACCCTGGCAATAATGCAGCTCTCCCAGATTTAG
GACGTGGTCCGCTTCCCTTTTATGCCCCGTCCTATAAACACACACACACACACCCAAGCAGAGCTCACCACACCAGCAGC
TACCTAGTAGTAGTAAAGGCTTGATTTACAGAATTGGCACCAAGAGAGCCAGAGTCTGAATCAAAAGCATTCGATCTCCT
TTGATCTCTAAAGAATGGCGGCTCCACCACCTTCCACCTTCATCGACGACGACGAAGATATGGACGCCGTCGACCTGTCG
CTGACACTCGCCCACACGCCGTGGCCGGCGTCACCGTCGTCTCCTCCGGCTGCTTCATCAGGTGGTGGCAATGGCAGT--
----GGCAGTGACAACGGTGGTCGTGGTGGCGTGAGGCTGTTCCCCTGCCTGTTCTGCAACAAGAAGTTCCTCAAGTCGC
AGGCGCTAGGGGGACACCAGAACGCACACAAGAAGGAGAGGAACATCGGCTGGAACGCGCACCTCTACACCACCCCCATC
AACACCAACTCAGCCGCTGATGCCATGCCCAGTAACCACCAGACGATGTACCCCATCCAGGTCTCGCACTCCTGCCAGCA
CCAGGGGTACCCCCACCTCGCCGACGGCGGCTCGCCGGGGGGCAGCTGGTGGCGCGACCAGGACGGCGACAAGAAGCAGC
AACAGCCGAGGAAGGTCGACCTTAACCTCAAGCTCTAGCTACCTAGTTCTGTTATTTTCCTTTTTATTATTATATTATTT
TCCCCTCCCTCTTTTTTTAGTCGATGTTTTCCTCTCTTTCTCTTCTCCCTTTTTAGTAGGTGTGGGTGGGTACTTGGTTA
ATGAGTGTCCCTTGTGCTGATTGTACCGATCGAGCGTGCAATTGATGATAATAAACAAGTAGTTGTTCGATTGTTTGGGA
CAAGAATCAGAAATATTGCACATTCTGTAAATTAACATCTACACATAATCTTGCTGTTAAAAAAACATCTATACATAATC
TGGTCAGCTGGTGTGCTGTGTGTGGACTGTGGACGTCTATGTCGTGTTGTTTTGAGCTTCTCCAAAGTTCTAAAAAAAAG
TATACTGATGATTTTATTTTT----------------AACATAATTAGTGTAATGTCACCGCAAGTAATTAATTGAAAAA
AGTCTTCGAAATGTTTCTTTTTCTGAACAATCACTAGGGAGAAAGGATCCCCACCTGAATGCATTACTCAAAGGTGATCA
TGGATGACAGAGTTACATGTTTGCGCTAGAATGCGAGGAGAGGTATTGCCGTCATGGCATGGTTGTGCTAGAACGTGAAG
AGAGGTATTG----------CCGTCATGACATGGTTGCGAGCTTTTTACAAGGATTCTTAAATAAATATGTCCAAAGGTA
GAAATCAGCAATAATCTTCCTAATGATAAGAGGCTGAAGAGTGAGTGTTGTGCCGGAAAACCTGAACATTCCTAGAATCC
CAAATTTTTCATAAAATGGAAAG--------AGCAACCGAGGGCCATAGGT-CGTTGTCGAGGCCATTTAGTGTTGGGGC
--AAATGATTGTACAATTTGTGTTTCGCAAGAGAAACAACAGCCCATCTATTGCTA--GCTAAGCATTTGTGTTTTCTCT
ATTCCTTCCAATGCATAGCTGATTAATAGCTACTGCACATAATTGTCAAAACATTTTAACCAATTAACTCCAAATTAAGC
--CAATTGCTCAAGAACCTTTTTAACAT-TGATCTAAATTATACTGTAAATTTCTTATTTGCTCGAGTTTTGAATCTATT
GTTAAAATGTAATTTAAGGT------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------S----S-
-----SS------------------S-------S-------SS--S-----------S--S----S---S----------
----------S-----S--------S-------S----------------------------------------------
S---SSS--------------------------------S----S-------S----------S---S-----------S
--S----------------------SSS--------------------------------S-------------------
------S-----------------------------------------------------------SS------------
--------------------------S----------S--S---------------------------------------
-----------------------------S--------------------------------------------------
---------------------------------------------------S------------S---------------
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---S----------------------------------------------------------------------------
---S---------------------S----------------S------------S------------------------
-----S-----S-----------------------------------------------S--S---------------SS
SSSS-----------------------------------------------S----------------------------
----------S---------------------------------------------------------------------
------------------SSSSS------------------------------------------S--------------
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-----S----------------------------------------S-----SS--------S--------S-SS-SS--
SSSSS-S------------------------------------------S-------------S----------------
------------SS-SS-SS------------------------------------------------S----SSSSSS-
SSS-SSSSSSSS-S--SSSSSSS---------------------------------------------------------
-----------------------------------------------------S--S------S--------S------S
S-SS--S-SS-SSSSS-SSSSSSSSSSSSSSSSSSSS----S-SS-----S-----S--S----S----SSSS-------
SS-----S--SS----S---SSSSSSSSSS-SSSS--S-SSSSSS-------------------------------SS--
--S---S----------------------------------------------------SSSSSS--S-S--S-----SS
-------SSSSSSSSSSSSS--SS----------SSS---S--SSS-S-SSSSS-SS-----------S--------SS-
------S----S---S---------S--------SS------------S----S---SS------S---S----------
--------SS---S---S----SSSSSSSSS--S------S-------S--S-----------------S------S--S
SS-----------------S-S---S------------------------------SS------------------S-SS
----S-S-S---------S----S-SS------SS---------------SSS--------------------------S
SS---------S---S-SS---SS-SSSS----------------------------------S---------------S
--S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_586
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------AAAATAAAGGGGGCGGGGAG------------------------------------------------------
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>reverse_1776
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---------------TGTACCGAGCGTGCAATTGA---------------------------------------------
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>forward_1146
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------TCTAAAGAATGGCGGCTCCG------------------------------------------------------
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>reverse_2935
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------------------------------------------------------TCTGACAAGTGGGTCCAAGC------
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