>input_sequence_70096
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----------------------------------------ATGGATTTCCATGATTGGCATCGTCCACAGGCCATCCATA
GAAGGAAGATCAATGATCCAGCACGCACTGGACCAATCAGTGATCCACCAGTAATCGGAGCAATGACAGATATTGCATTG
ATTGGACCTGCGCGACCCATCGGAGCATATACGGGGCTTGGACTTGAATTCAGTCCTGCCAGGACTACAAACGGAGGAGA
AGGGAGAAGACGCAACCAGAGGACGATCAACGAGAGGGGAGCAATTGTTGAGTCATGGGAGGTGGATAGTTATAATGATG
AGCCAAGTTTTCATCGCAAGGAAATTGCTGGGGAGTGGGAAGGTCAGAAGATACAAATATCTTATATGATTGTGCCTGAT
ACAGTGGAAGCCAGAATCAAGGTGAAGCTACTGCTCGCAGGAGGAAGCCGCTATCATGTGACAGGTTTCATAAAGGCATG
GGATGACAACATGGGACACGAATTTGTAAGGCTCTTGTCAGATTCAGACCAAACAGTGGAGGTGCCCTCTGACCAATGGA
CTCCACTTCCTTTGATGATTTCTCTGTTGTGTCTGAGCAATGCTGAGGAAGTTCAGTTGAAAGTCGCTGCATATCTCACT
TTCCGTTCATGCTCGAACAGTGAGGAGCAAGCACTGAATGTGTCTCCTGATCAATGCTTCAAGCTCAGCCAAAGAGCTGC
CAGACAAGAACGTGAGGTCATGGGCAACAGAATTTCTGTGGCTGTGAAATTCAGTACTTGA-------------------
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>chr1D_1_TraesCS1D01G272000
AGACCAATGCTTGGCAACCATTGAGATGGATCAATATTAGAATCCAAGCTGCGGGAACTAATCATTGGATTATGCCTTTT
CTGAGAGATGATAACTTATATGTTCGAGGTTTTGGTAACCGGCATAATGCTCATGAGCTAAGTCAAAATCTGTGTTTGCC
AGGGAAAGACAAAGTGGAGGTTCTGTCCAGGCAACTTCCCCTGAAACTCAACTGCATTCTCGTCAATTGGGACGTCACGT
ACCCCAAGATGTTCGGATGCAAGGGTGAGCATGCACTCGAAGCTGAATTTCAAAGGATCATGAGTGATGAAGATTTTGTC
TTTGAGGCAGTCTGTTTCTTGTCAAGTTATGTTCACGTCGAGGGCAGTGAGGCTGAACAGAAAGCCATGAAGTACTTAGC
GGGCATCACTTTCACACTGTGTGAGTTTTACAGAATGAAGCTTTGGCTAACCAATGTCCCATTGCACCTTTGGATACGTC
TCTGGGGGGATATTTGTTTTGAGTACCTTAAGTGGAGGGATCGAAACTTCACGGACTGGATTTCGGACAGAGTTGCAAAA
AAGAAGGGACAGATTGGTGAGACAAGGAAACAGAAGCATTTCAAAAATCTGGGCATCCAGAGGCCAGCTGATGGTTTGCA
AATCTTAAGCCTTATAATCAACTGAAATGTCACGTACTATGACAACCTAGAGAAGAACAGAAGTAAGAAGAATGTTAAAG
TCTCTGATGGAGGAGGAAAGGGTAACAGCCGGCTGAGTCAGAAGGGTGGTGGTGCATCAAATATGCCACAAGAAGGCAAT
ACCAGTCAGGAAACAAAGGCTGCAAGTAATAGCAACCAGAAAGGAGCTGTTTATGGAGGTGACCAGATTCAATACAGCCA
ACGAGAGCTATTGGAGGAGTTTGTGGGTTTGATGAGCCACGATACTGCAAGGACTCCCTTCCATGGGGACGGCGCAGGGT
CCAAATTCTGAGAGTGAGTTCCAATTTTGAAGTCGCTTGGATGGATTTCCATGATTGGCATCGTCCACAGGCCATCCATA
GAAGGAAGATCAATGATCCAGCACGCACTGGACCAATCAGTGATCCACCAGTAATCGGAGCAATGACAGATATTGCATTG
ATTGGACCTGCGCGACCCATCGGAGCATATACGGGGCTTGGACTTGAATTCAGTCCTGCCAGGACTACAAACGGAGGAGA
AGGGAGAAGACGCAACCAGAGGACGATCAACGAGAGGGGAGCAATTGTTGAGTCATGGGAGGTGGATAGTTATAATGATG
AGCCAAGTTTTCATCGCAAGGAAATTGCTGGGGAGTGGGAAGGTCAGAAGATACAAATATCTTATATGATTGTGCCTGAT
ACAGTGGAAGCCAGAATCAAGGTGAAGCTACTGCTCGCAGGAGGAAGCCGCTATCATGTGACAGGTTTCATAAAGGCATG
GGATGACAACATGGGACACGAATTTGTAAGGCTCTTGTCAGATTCAGACCAAACAGTGGAGGTGCCCTCTGACCAATGGA
CTCCACTTCCTTTGATGATTTCTCTGTTGTGTCTGAGCAATGCTGAGGAAGTTCAGTTGAAAGTCGCTGCATATCTCACT
TTCCGTTCATGCTCGAACAGTGAGGAGCAAGCACTGAATGTGTCTCCTGATCAATGCTTCAAGCTCAGCCAAAGAGCTGC
CAGACAAGAACGTGAGGTCATGGGCAACAGAATTTCTGTGGCTGTGAAATTCAGTACTTGAATTTCAACTAGAAACACAA
T-------------------------------------------------------------------------------
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--------------TTAAGGCTGGGCAACAGACTCTGTTCTCTTCCAGCGCAAGTTTCAGGATGTGTTTCAGACAATTGC
TGTCCAGCTACATAAAGTTCATGATTCTT-----CTGCTTGCTTCTCTTCAGCCATTGTACTTCTTCATGGCTGTCCTCT
G----------TTTCTTTGGCAGCACATTTTCAGATCGTGTCCCCTCTAGCTGCCTTCACTTGTTGGTCATGGTGTTCAT
CAGTAGGGGTTCTTGCTCCCTTGCTACTTTCTAGGACATCTATTCAGCTCTACATTTTCAGATTCTGCTGTTTCTTTTCT
TCCTATTTTCTGCCCTCTAGTTAAATATTAGCATGTAGACTTTGATCTTGGTATCATTTGCATTAACGTTGTGATGTGCC
AGGTTTAAAAAGTTGTTCGCTTAGTGATGAAAGATGAGGCGATGAATGCAAAAGCGGGCAAGCGATTGTTACTGTCTAGT
GTCTACTGGTAATAGTGGATAGAGATCGGGCAAGAGTTTTCAGTTATTCCCCTTTGGCAACTGTCTACTGCTAGTAGTGC
AAGTAGTTAAGATTGACCATCCAGCTGCTTAAACTCGAATCATGGGTGGATGACAGTGACACAGCAAACACTTGAATGAT
GTCTAGAATCGGGGCTCGCTTTGTTTAGTCCATCGACTCTTAGCACCTTCGCTCTATGTCGTTTTAACCTTGCTATCTTT
TTTGAACACTGGTGTAAAATTTCTTTGTTCAAAGCACCGCCCAGATCATAGTAGTAGTTCCCTAATTTTGGACAGTGTTC
TTATATAAGAAACTCGGAGAACAACAGTACTGCAGTTTAGTTTTAGGTTCCACATCAAATACATAGGTGCAGCCTCAAGT
GCACAGAAGCAGGGATCAGGACAATAGCAAAGAAAAAAAGTCCATGGCTATTCAGGTTAGTTTCCAAGCCAAAACGCACA
ACCTTTAGCGGTACTGCCAAAACGGTTGGGATGTTATTCATCAAAACGC
>chr1B_1039
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------------------------------------------------------------------------------TA
GAAGGAAGATCAATGATCCAGCACGCATTGGACCAATTAGTGATCCACCAGCAATCGGACCAATGACAGATATTGCATCG
ATTGGACCTGCGCTACCCATCGGAGCATATGCGGGGCTTGGACTTGAATTCAGTCCTGCCAGGACTACAAACGGAGGAGA
AGGGAGAAGACTCAACCAGAGGACGATCAACAAGAGGGGGGCAATTGTTGAGTCATGGAAGGTGGATAATTATAATGATG
AGCCAACTTTTCATTGCAAGGAAATTGATGGGGAGTGGGAAGGTCAGAAGATACAAATCTGTTATATGATTGTGCCTAAT
ACAGTGGAAGCAAGAATAATGGTGAAGCTACTGCTTACATGAGGAAACCGCTATCATGTGACAGGTTTCATAAAGGCATG
GGATGACAACATGGGACACAACTTTGTAAGGCTCTTGTCAGACTCAGACCAAATAGTGGAGGTGACCTCTGACCTATGGA
CTCCACTTCCTCTGATGATTTCTCTGTTGTGTTTGAGCAATGCTGAGGACGTTCAATTGAAAGTTGCTGCATATCTAACT
CTCCATTCATGCTCGAACAGTGAGGAGCAAGCACTAAATGTGTCTGCTGATGAATGCTTCAAGCTCAACCAAAGAGCTGC
CAGACAAGATCATGAGGTCATGGGCAACAAAATTTATGTGGCTGTGAAATTCAGTACTTGAATTCCAACTAGAAACACAA
CTTTTGTCTATGATGAGAACTTGATAGTCATGTCAATTCGTGTCAGACTTCCGCGCGTCTTATGATGTTTAAAAGGCACC
CGCACCTTATCAATTTTACAAGCAGTCAACTATGAACTGTAATCTGGTGTTAGCATTCATACTGTGCACTATTATTAAAG
TCTTTGCTTCTTGGTTATATCCTTCTTTTTATGGTTATGATGTATGTGTGTGCTTGTTTTTTCAGACTTTCTGTTGCAGA
ATTGCAGGGCCTTCAAACTTTTCATGGAGTTGAACTTCTGGAGATGCAAAGATCCTTGTTTATGTTTTTCCAGGCTTTGC
TAAGGAACTTTGACTTAAGGCTGGGCAACAGACTCTGTTCTCTTCCAGAGCAAGTTTCGGGATGTGTTTCAGACAATTGC
TGTCCAGCTACATGAAGTTCATGATTCTTATCTTCTGCTTGCTTCTCTACAGCCATTGTACCTCTTCATGGTTGTCCCTT
GTTGTTCTCTATTTCTTTGGCAGCACATTTTCAGATCGTGTCCCCTCTAGCTGCCTTCACTTGTTGGTCATGGTGTTCAT
CAGTAGGGGTTATTGCTCCCTTGCTACTTTCTAGGACATCTATTCAACTCTACATTTATAGATTCTGCTGTTTCTTTTCT
TCCTATTTTCTG--------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---------------------------S---------S-------------S-------S------------------S-
-------------S----------------S-------------------------------------------------
-----------S-------------------S-------S------------------S---------S-----------
------S-------S------------S------------------------------S-S----------------S--
-----------S-----S-S---------------SS--S------S---------------------------------
-------------------S-S--------------------S----------S----------S---------S-----
-----------S--------------------S----------------S-----S--------S-----------S---
S---S------------------------------S---------S-----S---------------S------------
---------S-S-----------------S-----S----------------------------S---------------
S-------------------------------------------------------------------------------
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------------------------------------------------S---------S---------------------
-------------S----------------------------------S------------S---------S-----SS-
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-----------S----------------------------------S----------SS---------------------
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_774
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----------------------------------GAGTCAGAAGGGTGGTGGTG--------------------------
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>reverse_3034
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-------------------------------------------------------------------------ACGCACA
ACCTTTAGCGGTA------------------------------------
