>input_sequence_70075
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----------------------------------------------------------------------------ATGG
AGCCTGCCAGTGCTAGCTTGGTCTCCCTGAGGGCATCCACCGCCACGAGCCGCAGCTGTTTCTCATGTCAGCAGCGAGCG
ACGCCCAGGACCAGGATGCTTCCGGCCATGGCGTCCAAGTCTGGGGCGAAACTGGTATGTGTA--TCTCGTCACATAATT
TCAGTTTCTTCATCTTCTCGGCACCAGCTGGTTGTAGCCATGGCTATTGTTGCTGGCTTGCTGCACAGAAGCAATTCTTG
CCAGTGTTGTATTGAAGAAGATGCTGCTTGTGCTGTGCAGGTGGCTTCAGGCTGCAAGACATGCAGGGGGAAGGGTGCAG
TGGAATGCGAAGGCTGCAAGGCAAGACCAATCTCTGCTTGCTGCTGCCATACATATCTTGTCTTCTCAAGGCCATTTATT
ATTATCTGCAAATGCTTTTTTTTTAATAAC----------------------------------------------TATT
GATGAGTGGAGATAACTGATTGATGAATGATGATGCAGGGGACTGGCAGGAACAAGAAGAACGGCAACATCTTTGAGAGA
TGGAAGTAGGTTTTTCTGATTAATTAAAAAGACAAATGTTAAGCCATGATGATATGATATATTTGTTGTGCTAGGATAGG
ATTGTTACTTATTAGTGTTTG------TGTGGCTAAACTGCTGGTATTG----TGGGATATGGTTCAGGTGCTTCGACTG
CCAGGGGTTTGGGATGAGGAAGTGCCCCACCTGCGGCAAGGGAGGCCTCACGCCGGAGCAGAGAGGAGAACGATAG----
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>chr1A_1_TraesCS1A01G015100
GTGGGGCCATCCATGGGTGAGAAGCAACCATTGACAAAGAAACTGCCTCCTGCAACTACTGTAAGTGCTTCATACCACTT
GTCTATCCTTATTTTTGG-CTCCCTCTGGCACTTATTTGTACTGCTTACAGTGATGACAGATCGTTCATCCGATCTGCTT
TGTCGCATTCAATGTTTTAACTGTCA----TTTTTTTT--------------TGTGTAGGTTGGAAAGCTGAAATCTTTG
TGCGAGAGCTTCTTTAAACTGAAGGACATCAAACTGAGATTATTTCTTGAAGAAGAGGTATGACATATATTGTGTCTCTC
CATTATTTCCTCCACAGTTGAACTTCTGGAGTTCTATTGCTCATGTACAAAAGTCTGATTAAAAAAAGTACTGCTTAGTT
GTCTCCGAAAGAACCTGCTTGTGAATATGCCAATATTTGAAATAGATTATTATTCATGCTATGGTTGTGTTTTAGCAGGG
ATGCCCACTACCACAACTACTTGAAGAAGAGACGGCTTCGCTTGTGGAGCTTGGGATAGGCACAGGAGCAACTATTATCG
TCGATGAAGAAAGCTAGTCCTCTGCTGGGAACAGAAGAAAGAACATATGTATTTGTGTGCACGGATACCACACTATGATT
ACTTTAAAAGAACCAGTCTTCTTTTTTCTGTTCATTTGTTAGAGAAAATGTGGTCTTCTTGGTGTGATGTTATATTTGTT
TAGACATGTGAGATGCTGTATTTTATAGCTGTGCTGCTGAAAACAGA--TGCTGTTTTTGTAGCTCTTT----------G
TGAGGGCAGATAGAAAATCAGCTTTATCCTTATCCTCATCATATGGCCACAAGGCCTCACACCACAAATAATGCTACTAC
TCATATTTCTTTGTTTCTGTGGCTACAAAGTTTCCCAGTCGCTGTCCTTTGTCTCTCTTCTTCAGAGGCTTGAGGATGGT
TTGCCTTGTGCATTGCACTGCATAGGGCTGTAAAACTTGGAAGGTTTCTGAGGCA-----AGCAGCAGCAGCAGCTATGG
AGCCTGCCAGTGCTAGCTTGGTCTCCCTGAGGGCATCCACCGCCACGAGCCGCAGCTGTTTCTCATGTCAGCAGCGAGCG
ACGCCCAGGACCAGGATGCTTCCGGCCATGGCGTCCAAGTCTGGGGCGAAACTGGTATGTGTA--TCTCGTCACATAATT
TCAGTTTCTTCATCTTCTCGGCACCAGCTGGTTGTAGCCATGGCTATTGTTGCTGGCTTGCTGCACAGAAGCAATTCTTG
CCAGTGTTGTATTGAAGAAGATGCTGCTTGTGCTGTGCAGGTGGCTTCAGGCTGCAAGACATGCAGGGGGAAGGGTGCAG
TGGAATGCGAAGGCTGCAAGGCAAGACCAATCTCTGCTTGCTGCTGCCATACATATCTTGTCTTCTCAAGGCCATTTATT
ATTATCTGCAAATGCTTTTTTTTTAATAAC----------------------------------------------TATT
GATGAGTGGAGATAACTGATTGATGAATGATGATGCAGGGGACTGGCAGGAACAAGAAGAACGGCAACATCTTTGAGAGA
TGGAAGTAGGTTTTTCTGATTAATTAAAAAGACAAATGTTAAGCCATGATGATATGATATATTTGTTGTGCTAGGATAGG
ATTGTTACTTATTAGTGTTTG------TGTGGCTAAACTGCTGGTATTG----TGGGATATGGTTCAGGTGCTTCGACTG
CCAGGGGTTTGGGATGAGGAAGTGCCCCACCTGCGGCAAGGGAGGCCTCACGCCGGAGCAGAGAGGAGAACGATAGAAGA
AACAT-CAAGCATCCATCCATCCATGGCAG----------ATGCACTCTCCAATGTCTTATTTATCATGCTCAACTTTGC
TCGAATTCTGACAACTATCTAGAAGTAAGTATCAACCAGAATTGCCAAACAAAAT---GAAAACCGAATATGGTGATACA
CATATTTGGTCTGAGAACCAGCAGTATAATGCCAAGCAGAATGTTGTGAGGAAATCAA-CTGGTTTCTGCGCGTATTGAC
TGGTCTGGAGGCTTTTGAATCTATATGTTGTAAGTATT---------TTTTTTGTTCTTTTGAATATATTCAGTTTGTCG
TAAGTATTATTT-AAAAAACTAAGTGCCTCTCTTGGGCGATGGGTGGCACTCATCTGAGGTTGCATGTGGCCCCTTTGCA
CATTTAGCTACAGAGCACCAATGTGCCGCCTCAGGTTTGTGCCCATTGCAGTGGCTGCCTGGTGGGCTTTCCACAACATG
TTCAGTTTCAATAGAAATTTTTGCCCATTAAGTTCATCTGAGAC--ATGATGGATAAATCCGTCAAGTGATAACAAGTTT
ATGTATCCACC---------------------------------------------------------------------
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----------------------------------------------------------------------------CTAA
ATTATTGATATGTCTAGTTCAGCCAACGGAATCGCAAAATATTAGCCATACAGATATACTCCTTCTGTTCGAAAAAGCTT
GTCCCTCAAATGGATGTATCTAGCATCAAGTTAGTGCTAGATAGATCCATTTGAGGAACAAGCTTGGGACAAGTTATTTC
AGACGGAGGGAGTATGTATTTGCAAAAGATGGTCGCTCAAGTTTCTTGCCCTAGATGCATTTTTTTTAAAAAC---TATT
TGGATCCATAATCAACAAAACTAAGAATATCAGTCCCATACACCATAAAAATCATAAGTAGAGTAGCAAGCCAAACACAT
CATATAGTAAT--AAGTTAATAAAAAAGTAATCACAAATGAGAAGATGGAAATAA----------CTAGTTAACTTCCAA
CTCCCATAAGACATATCCTGAGCAACATAATATAACTTCATTCCCCCCCTTTGCCATCAAGAC
>chr1D_1
GTGGGGCCATCCATGGGTGAGAAGCAACCATTGACAAAGAAACTGCCTCCTGCAACTACTGTAAGTGCTTCATACCACTT
GTCTATCCTTATTTTTGG-CTCCCTCTGGCACTTATTTGTACTACTTACAGTGATGACAGATCGTTCATCTGATCTGCTT
TGTCCCATTCAATATTTTAACTGTCAAAGTTTTTTTTT--------------TGTGTAGGTTGGAAAGCTGAAATCTTTG
TGCGAGAGTTTCTTTAAACTGAAGGACATCAAACTGAGATTGTTTCTTGAAGAAGAGGTACGACATATATTGTGTCTCTC
TAATATCTCCTCCAAAGTTGAACTTCTGGAGTTCTATTGTTCATGTACAAAAGTCCGATTAAAAAGAGTACTGCTTA-TT
GTCTTTGAAAGAATCTGCTTGTGAATATGCCAATATTTGAAATAGATTATTATTGATGCTATGGTTGTGTTTTAGCAGGG
ATGCCCACTACCGCAACTACTCGAAGAAGAGACGGCTTCGCTCGTGGAGCTTGGGATAGGCACAGGAGCAACCATTATCG
TCGATGAAGAAAGCTAGTCCTCTGCTGGGA---GAAGAAAGAATATATGTATTTGTGTGCACGGATACCGCACTATGATT
ACTTTAAAAGAACCAGTCCCCTTTTTTCTGTTCATTTGTTAGAGAAAATGAGGTCTTCTTGGTGTGATGTTACATTTGTT
TAGATATGTGAGATGCTGTACTTTTTAGCTCTGCTGCTGATAACAGAGATGCTGCTTTTGTAGCTTAAGTCAGGCCAAAG
TAAGGGCAGAGAGAAAATCAGCCTCATCCTTATCCTCATCATATGGCCACAGGGCCTCACACCACAAATAATGCTAAAAA
TTATACTTC-TTGTTTCTGTGGCTACAAAGTTACCCAGTCGCTGTCCTTTGTCTCTCTTCTTCAGAGGCTTGAGGATGGT
TTGCCTTGTGCATTGCACTGCATAGGGCTGTAAAACTTGGAAGGTTTCTGAGGCA-----AGCAGCAGCAGCAGCCATGG
AGCCTGCCGGTGCTAGCTTGGTCTCCCTGAGGGCATCCACCGCCACGAGCCGCAGCTGCTTCTCATGTCGACAGCAAGGG
ACGCCCAAGACCAGGATGCTTCCGGCCATGGCGTCCAAGTCCGGGGCGAAACTGGTATGAGTATCTCTCCTCACAGAATT
TCAGTTTCTAAATCTTCTTGGCACCGGCTGGTTGTAGCCATGGCTATCGTTGCTGCCCTGCTGCATAGAAGCCATTCTTT
CCAGTGTTGTACTGAAGAAGATGCTGCTTGTGCTGTGCAGGTGGCTTCAGGCTGCAAGACATGCAGGGGGAAGGGTGCAG
TGGAATGCGAAGGCTGCAAGGCAAGACCAATCTCTGCTTGCTGCTGCCATACATATCCTATCTTCTGAAGGCCATTTATT
ATTATCTGCAAAT-ATATTTTTTAATAATTATCTTCTGAAGGCCATTTGTTATAATCTGCAATCATATTTTCTTAATATT
GATGAGG------AACTGTCTAATGTT---TGATGCAGGGGACAGGCAGGAACAAGAAGAACGGCAACATCTTCGAGAGA
TGGAAGTATGTTT--------ATTAATCATGAGAAATTACAAGTCATGATATTCATGTAG-----TACGTGTAGTCGAAG
TATCACTTGTTACTCCAGCGATTAGTTTGTGACTAAACTGCTGGTATTAATTATGGGATATGGTTCAGGTGCTTCGACTG
CCAGGGGTTTGGGATGAGGAAGTGCCCCACCTGCGGCAAGGGAGGCCTCACGCCGGAGCAGAGAGGAGAAAGATAGAAGA
AACAGCCAAGCATCCATCCATCCATGGCAG----------ATGCACTCTCCAGTGTCATATTTATCATGCTCAACTTTGA
TCGAACTCTGACTACTATCTAGAAGTAAGTATCACCCAGAATCGCCAAGCAAAATGTCGAAAACCGAATATGGTGATACA
CATAATTGGTTTGAGAACTGGCAGTATAATGCCAAGCAGAATGTTGTGAGGAAATCAA-CTGGTTTCTGCGCGTATTGAC
TGGTTTGCATGCTTTTGAATCTATATGCTGCAAGTATTTTGTTTTTGTTTTTTGTTTTTTTGAATATATTCAGTTTGTCG
GAAATATTATTT-AAAAAACTAAGTGCCTCTCCTGGGCGATGGGTGGTGCTCATGTGAGGCTGCATGTGGCCCCTTTGCG
CACTTAGCTACAGTGCACCAATGCGCCGCCTCAGGGTTGCGCCCATTGCAGTGGCTGCCTGGTGGGCTTTCCATACGATG
TTCAATTTCAATAGAAATTTTTGCCCATTAAGTTCATCTGAGCCATATGATGGATAAATCTGTTAAGTGATAACAAGTTT
ATGTATCCATGCTAAATTGTTT----------------------------------------------------------
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-------ATATGTCTAGTTCAGCCAACGGAATCGCAAAATATTAGCCATATAGAAA------------------------
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------------CATGTATTTCCAAAAGATGGCCGCTCAAGTTTCTTTTCCTGGATGCAAAAAAGAAGAAGAAAA--ATT
TGGATCCATGATCAACAAAACTAAGAATATCAGTCCCATGCACCATAAAAATCACAAGTAGAGTAGCAAGCCAAACACCA
CACATGGTCGAACAAGTTATTGAAAAGGTAATCACAAATCACAAGATGGAAATCAAAGAGTGATGCTTGTGAACTTCCAA
CTCCCATAAGACATCCC--GAGCAACCTAATAGAACTTCATTCTCCCCCTTTGGCATCAGGAC
>chr1B_1
GTGGGGCCATCCATGGGTGAGAAGCAGCCATTGACAAAGAAACTGCCTCCTGCAACTACTGTAAGTGCTTCATACCACTT
GTCTATCCTTATTTTTTGTCTCCCTCTGGCACTTATTTGTACTACTTACAGTCATGACAGATCGTTCATCCGATCTGCTT
TGTCCTATTCAGTGTTTTAACTGTCA----AAGTTTTTTTTTTTTTTGTGTGTGTGTAGGTTGGAAAGCTGAAATCTTTG
TGCGAGAGTTTCTTTAAACTGAAGGACATCAAACTGAGATTGTTTCTTGAAGAAGAGGTACGGCATATATTGTGTCTCTC
CATTATCTCCCCCACAGTTGAACTTCTGGAGTTCTATTGTTCATGCACAAAAGTCCGATTAGAAAAAGTACTGCTTTGTT
GTCTTTGAAAGAATCTGCTTGTGAACATGCCAATATTCGAAATAGATTATTATTGATGCTATGTTTGTGTTTTAGCAGGG
ATGCCCACTACCGCAACTACTCGAAGAAGAGACGGCTTCGCTCGTGGAACTTGGGATAGGCACAGGAGCAACCATTATCG
TCGATGAAGAAAGCTAGTCCTCTGCTGGGAACAGTAGAAAGAATATATGTATTTGTGTGCATGTATACCGCACTATGATT
ACTTTAAAAGAGCCAGTCTCCTTTTTTCTGTTCATTTGTTAGAGAAAATGTGGTCTTCTTGGTGTGATTTTATATTTGTT
TAGACACGCGAGATGCTTTATTTTATAGCTGTGCTGCTGAGAACAGAGATGCTGTTTTCATAGCCCTTT----------G
TGGGGGCAGAGAGAAAATCAGCTTTATCCTTATCCTCATCATATGGCCACAAAGCCTCACACCACAAATAATGCTAGAAC
TCATATTTCTTTGTTTCTGTGTCTCCAAAGTTTCCCAGTCGCTGTCCTTTGTCTCTCTTCTTCAGAGGCTTGAGGATGGT
TTGCCTTGTGCATTACCCTGCATAGGGCTGTAAA-CTTGGAAGGCTTCTGAGCAAGCAGCAGCAGCAGCAGCAGCCATGG
AGCCTGCTAGTGCTAGCTTGGTCTCCCTGAGGGCATCCGCCGCCACGAGCCACAGCTGCTTCTCGTGTCGGCAGCGAGCG
ACGCCCAAGACCAGGATGCTTCCGGCCATGGCGTCCAAGTCCGGGGCGAAACTGGTATGAGTATCTC--CTCACAGAATT
CCAGTTTCTTCATCTTCTTGGCACCGGCTGGTTCTAGCCATGGCTATCGTTGCTGCCCTGCTGCATAGAAGCCATTCTTG
CCAGTGTTGTACTGAAGAAGATGCTGCTTGTGCTGTGCAGGTGGCTTCAGGCTGCAAGACATGCAGGGGGAAGGGTGCAG
TGGAATGCGAAGGCTGCAAGGCAAGACCAGTCTCTGCCTGCTGCTGCCATACATATCTTATCTTCTGAAGGCCATTTATT
ACTATCTGCAAATGATTTTTTTTGATAGTTATCTTCTGAAGGCCATTTGTTATAATCTGCAATCATATTTTCTTAATACT
GATGAGGGGAGCTAACTGTCTAATGCT---TGATGCAGGGGACTGGCAGGAACAAGAAGAACGGCAACATCTTCGAGAGA
TGGAAGTATGTTTGTC--------AATCATGAGAAATTACAAGTCATAATATTCATGTACAGTACTACGTGTAGTCGAAG
TATCAGTTATTACTCCAGTGATTGGTTTGTGACTAAACTGCTGGTATTA----TGGGATATGCTTCAGGTGCTTCGACTG
CCAGGGGTTTGGGATGAGGAAGTGCCCCACCTGCGGCAAGGGAGGCCTCACGCCGGAGCAGAGAGGAGAAAGATAGAAGA
AGCAT--AAGCATCCATCCATCCATGGCAGCTGCAGGCAGATGCACTCTCCAATGTCATATTTATCATGCTCAACTTTGC
TCGAATTCTGACTACTATCTAGAAGTAAGTATCAACCAGAATCGCCAAATAAAATGTCGAAAACCGAATATGGTGGTACA
CATAATCGGTTTGAGAACCGGCAGTATAATGCCAAGCAGAATGTTGTGAGGAAATCAAACTGGTTTCTGCGCGTATTGAC
TTGCTTGGATGCTTTTGAATCTGTATGCTGTAAGTATTTTTTTA-----------TTTTTTGAATATATTCAGTTTGTCG
TAAGTATTATTTAAAAAAACTAAGTGCCTCTCCAGGGCGATGGGTGGCACTC-TGTGAGGCTGCATGTGGCCCCTTTGCG
CACTTAGCTACAGAGCACCAATGTGCCGCCTCAGGTTTG--------------GCTGCCTGGTGGGCTTTCCATAACATG
TTCAGTTTCAATATAAAATTTTGCCCATTAAGTTCATCTGAGACATATGATGGATAAATCCATCAAGTGGTAACAAGTTT
ATGTATCCACACTAAATTAAAGGGAGGTGATATTCTTGGTTTCGTCCCGTTTCGTTTGGTCCAATTCAATTAATTTCACG
TAGGCTATTTGGTTTCGTTACTTGCCACCCGTTTTGGCCCAACAGAGGAAGCCCACCTGACGGCGCACTGTGGCCCACGT
ACGGAGAGATAGCAAAAATTAAATTTGCCGATGGCAGGGTTAGATCTCATAACCCACCAACCGGCCATGCACGGTTTGTC
CAACTGACCCAGCTAGAGATATAAGTGGTTTTTTTTCTCCCCCGTTGCAACGCACGGGCCTTTTTGCTAGTCCACACTAA
ATTATTGATATGTCTAGTTCAGCCAATGGAATCGCAAAATATTAGTCATACAGAAA------------------------
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------------TATGTATTTGCAAAAGATGGTCGCTCAAGTTTCTTGCCCCGGATGCGAAAACGAAACATATATATATT
TGGATCCCTGATCAACAAAAATAAGAATATCAGTCCCATCTAACATATAAAGCCTGGTAGAGTA----------------
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>SNPs
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-------------------------------------------S------------------------------------
----S---------------------------------------------------------------------------
--------S--------------------------------S------------------S-------------------
------S--------------------------------S---------------S------------------------
----SS-------S----------------------------------------S-------------------------
------------S--------S--------------------S-----------------------------S-------
-------------------------------------------S-------------------------S----------
-------------------S------------------------------------------------------------
----------------------------------------S---------------------------------------
----------S-----------------------------------------------------------------SS--
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---------------------------------------------------------------------------S----
----------------------------------------------------------S----------S----------
-------S---------------------------------S-----------------S---------S-----S----
------------------S------S---------------------S-------S-S-------S------S-------
-----------S--------------------------------------------------------------------
-----------------------------------------------------------S------S-------------
--------------S--------S-SS-SS--------------------------------------------------
------S----S------SS-S---SSSSS-------------------------------------------S------
--------S----S--SSSSS-S-S-SS-S--S----SSS---S------SS-SSSS--S-S-SS-SSSSS---SSS-S-
SS-SSSSSS-SSSSSSSS-SS----------S----------------S-------------------------------
----------------------------------------------------------------------S---------
---------------------------------------------------------S----------------------
------------S-----------------------------S-------------------------------------
----S-----S--------S------------------------------------------------------------
----S----S-----------------S----------------------------S-----------------------
--------------------------------S---------------------S-----S------------------S
--S------------------------------------S---------------------------------S------
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----------S---------------------------------------------------------------------
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------------------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS----------------------------------------S------SSSSSSSS---S-S-------
---------S-----------------------------S--------------------------------------SS
--S--S--SSS--------S-S----S------------S-S-----------S-------------S--S---------
--------------SS-SS-------S-----S----------S---------S-----S---
>forward_523
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-----------------------AAGAAGAGACGGCTTCGCTT-------------------------------------
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>reverse_1700
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-------------------TGTGTGGCTAAACTGCTGGT-----------------------------------------
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>forward_1180
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----------------------------------------CTGGGGCGAAACTGGTATGT--------------------
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>reverse_2852
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---------------------------------------------------TGAGGAACAAGCTTGGGACA---------
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