>input_sequence_70041
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-----------------------------------------------------------------ATCACCATTGCCGAT
CGATACATCTAGCTAGCTATCAGCAAGAAGCCAAGCTAGCTATAGTCAAGTGAAGTCGGAATAGCTAGG----TAGCTAG
CAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCGCGGGCGGGGCG
GCGCGGCCGGGCAAGGTGCTGGTGCATGTGCCGAGCGGCGAGGTGGTGACCTCGTACGAGGGTCTGGAGCGGCGGCTGCG
GGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTGCACCTCATCTCCG
TCCCGCGCGACTTCACCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGTCCGC
GACGCCTGAGCTAGCCAACCATAGCTTGCATCCCTGCCTTGTGTAATCTAAGCTTGCATGCCTGCCTTGTGTACTCTACT
TCGAGGTCGTCGTCTTCCAAGCGGCCGGATGTATTGTCTGTGTGTGTGTGATCGAATTGTGAGGGAGTATATCTAATAGC
GCGGTAACTACGTGCGCGTGCGTGTGGCTTGCCAGCCAGTCTGCATGTGTGTAGCTCAATAAGAGGTAGCGCTGCCGTGA
ACAGGGAACTCCTGCCTACCGGTTTGGGATTTTGGGTTGTCTGTATTGTTTCTTCCCATAAGTTATCAAAAAATCGGTTT
TGCTATTTCTCGG-------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G037300
AATGATGACCCGACAATGGAGGAAGTATCCGACGAAGAGTTAGTGCCCCACCCGCACCGGTCCATGGTGGCTCCACCATG
GAGTTGGCCCAATTGCACTTCAACGTCGTCGTGGCGG-GGTGGAACCGGTGTCTATTTGGCGGGCGCAGGATGAGCAGCG
CTACAACCTCGCCTCCTCGTACCTTACTGGTTGACGGAGTGCCAAATCTACAGTGAGGTCGCGAGCGCGGAGGCCCTGGC
GTTCATGGCCATGAATGAACCAAACTCTGACAAGGAGCAGCGGGTGCTCTAAGAGACCGCGC--AGCGCTCGCATTGGCC
GCAACGTGATCGCGGTGGTGCCAGATGCGCAGGCGGCGCTAGCGGCACAGAAGATCGTGGATCGGCACGTCGACAGCTCC
ATGTCGTTTGCGTCGCCTACATGGTTCGCACCTGGCCACAAGGACCACTAGGCCGACCCATCCACGTCTATCGTGAACCT
CACCCCAACTGGCGACGTTCATGCCATGGACTCCGACGAGAAAGAGTTGGACATGGGAGACGGATGCGCCTCGTCTCCCA
TGTCTTACTCTTTCTCGTCGTCGACCTGCATCTTCACTTCCCAAGGCTCACGGCCTAC-------------GTGAAATAG
TAAGGACTTGGAAAATGGACGCCGGCGAAGATTTAGACTCGGTTAACTGCCGGACACTTTTGATTAGCCAACTATGTCGA
AAATGTAATGAATGTATTCCGGTTTAAATGGAAATTCATCCGGTTTGCAAACAAATCATCTGGTTATTTGTTGAAACTAC
GATTGTGATGTGTCCAGACGGATGGTTTTA--TATAGGATTGGATGACCGAGTCCGGTATCATGCATCCACAAACGAATA
ATGTGTCTGTTTCCGTTTTGGGGATAGAGATGCCCTAGGCAAAGCAGTGTGCCCATCCTCCGACCGACGTCATTTCATCC
CATAGCTTTCGCCTCTATATAAGCTCTGCTACCCTCTTCCATCCCCATTGCACC-------ATCGATCACCATTGCCGAT
CGATACATCTAGCTAGCTATCAGCAAGAAGCCAAGCTAGCTATAGTCAAGTGAAGTCGGAATAGCTAGG----TAGCTAG
CAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCGCGGGCGGGGCG
GCGCGGCCGGGCAAGGTGCTGGTGCATGTGCCGAGCGGCGAGGTGGTGACCTCGTACGAGGGTCTGGAGCGGCGGCTGCG
GGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTGCACCTCATCTCCG
TCCCGCGCGACTTCACCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGTCCGC
GACGCCTGAGCTAGCCAACCATAGCTTGCATCCCTGCCTTGTGTAATCTAAGCTTGCATGCCTGCCTTGTGTACTCTACT
TCGAGGTCGTCGTCTTCCAAGCGGCCGGATGTATTGTCTGTGTGTGTGTGATCGAATTGTGAGGGAGTATATCTAATAGC
GCGGTAACTACGTGCGCGTGCGTGTGGCTTGCCAGCCAGTCTGCATGTGTGTAGCTCAATAAGAGGTAGCGCTGCCGTGA
ACAGGGAACTCCTGCCTACCGGTTTGGGATTTTGGGTTGTCTGTATTGTTTCTTCCCATAAGTTATCAAAAAATCGGTTT
TGCTATTTCTCGGTCATCTGAAATTTTGTTTTGCGTCGGTCACCATTTCCTTCTTCCTTCCTTCTTGGCTGGACCTCGCT
CGAGGAGATGCAACCATACCGGCGAAGAACCAGTCCGACTATCTATCTTGCGGGGAATCCATAACTTACTTATCTATCTT
AAGGGGAAACTACAACTCCATTTTCTATCTTAGGGCTGTGTTTGCATGGGATCACCACAGGTTTTCACCGGTGGTGTGGG
GGCATAAAGGGATGGTTGGGCAGTGGCCAGCAACGGTGGTGGGGGAGGTTGAGGGGAGGACGGAGCGGTGAGGAGATGCG
TGATAGCGCCCGCTGGCTGCGAGTGGTGGAGGCTGGCAGTCGTGGTGAGGACGAAGAAGATGAATAGTATGCGGCCTGTT
TTGGCCCGTCAGATCTCCAAATAAGAAGTGACTGATGCAATAGTCTTTTTTTTTGGCTGGATGCAATAGTTATTCTCAGG
TACCCGAAAGAAAAAGTGGCTCCCATCAAAAATTAACCCCCATTGCCACGGGTAAGTAAGAAAATGATTCAACAAGTTTT
TTTGGTACGCCGGTTCCACGTCTTGAGCACCACCCATGGGCAATGATAAAAAATAACATGCTATGACAAAATAGCGTGAC
CCTTAAAATATGCTATTTGCATGCTATATTGCGCTGCAGTGTGCTACCGCCATGGACCGTGGCAGTAGCAAAAGGCTCAC
ATCCCGAAATTTTTACAAACTAGAGTCAGATCTTGATTAAGTTTAGAAAAGGGTCAAAACACAAAATGTTGCCGTGTGCG
GGAGGAGGTTGCGGAGCGGGAGGCTCCTCGGGCCACGGCCGGTGCTGATTCTGCAACGACAAGGAAGAGAAGGTGACGGC
CAGGCCATGCATGCGCCGCAAGCGCTAGGTCGACGGTGTCGCAGCTCGACCTCCAGTGTTGGACAAGTCAGCTGGTTGGC
CATAGCAGTGAGAGAGTGGTGCTGCTCAATGGGCGAAGTCGGCGAAAGGTGCG
>chr6D_4
---GATGACCCGACAATGGAGGAAGTATCCGAGGATGAGTCGGTGCCCCACCCGCACCGGTCCATGCTGGCTTCACCATG
GAGTAGGCCCAATTGCACTTCAATGTCATCATCGCGGAGGTGCAGCCGGTGTCCATCCGGCTGGTGCAGGACGAGCAACA
CTACAACCTCGCCTCCTCGTACCTCATCGGTTGATGGAGTGCCAAATCTACAGCGAGTTCGCGAGCGCGGAGGCTGTGGC
GTTCATGGCCGCGAAGGAACCGAACTTCGTCGAGGAGTAGCAGGTGCTCTACGAGGCCACGTGAAGCGCTCACACTGGCC
GCAACGCGATCACGGCGGAGCTGGATGCGCAGGCGGCGCTGGTGCCACAGAAGATCGCTGAAGGGTACATCGGTAGCTCC
ATGTCGTTTGCGCCGCCCGCACGGTTCGCGCCGGGCCACAAGGAGCACCAGGCCGACCCATCCACGTCTATCGTGAGTCT
CACCCCAACTGGCGACGTTTAGGCCGTGGACTCCGACGAGGAAGAGTTGGACATGGGAGACAGATACGCCTCGTGTCCCA
TGTCTTACTCTTTCTCGTCGGCGACCCGCATCTTCACTTCCAGATGCTCACGGCCGGCATACGCAGGACATGTGGAACAC
TAAGGACTTGGAAGACGGATGCCAGCGAAGATTTGGACTCGGTTAACTTCATGACACTTTTGATTAACGAACTATGTCGA
AAATGTAATGAATGTATTCCGGTTTACATGGAAAATCATCCAGCTTGCAAACAAATCATCTGTT--TTTGTTCAAACTAC
GAGTGAAATGTGTCCAGACCGATGGTGTATACTATATGATTGGATGGCCAAGTCCCGTATCATGCATCCGCAGACGAATA
ATGTGTCTATTTCCGTTTTGGGGATAGAGATGCCCTAAGCAAAGTAGTGTGTCCATCCTCCGACCGACGTCATCTCATTC
CATAGCCTTCGCCTCTATATAAGCTCTGC--CCCTCTCCCCTCCCCTTTGCACC-------ATCGATCACCACTGCCGAT
CGCTG-----------------------------GCTCGC--TAGTCAAGTGAAGTTGGAATAGCTAGGTAGCTAGCTAG
CAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCACGGGCGGGGCG
GCGCGGCCGGGCAAGGTGCTGGTGCATGTGCCGAGCGGCGAGGTGGTGACCTCGTACGAGGTTCTGGAGCGGCGGCTGCG
GGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACGGTGCACCTCATCTCCG
TCCCGCGCGACTTCGCCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGTCCGC
GACGCCTGAGTAGCTTC-----AGCTGGCATGCATGCTTTGTGTAATCTA------------------------------
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>chr6A_355
GCTGGCA-------------------------------------------------------------------------
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--------------------------------------------GCACAGAAGATCGCGGATCGGCACGTCGGCAGCTCC
ATGTCGTTTACGTCGCCTGCACGGTTCGCACCTGGCCACAAGGACCACTGGACCGACGCATCCAGGTCTATCGTGAACCT
CACCCCAACCAGCGATGTTCATGCCATGGACTCCGACGAGAAAGAGTTGGACATGGGAGACATATGCACCTCGTCTCCCA
TGTCTTACTCTTTCTCGTCATCGACCTGCATCTTCACTTCCCGAGGCTCACAGCCAGAAGATGCCGGACAGGTGAAATAG
TAAGGACTTGGAAGATGGACGCCGGCGAAGATTTAGACTCGGTTAACTGCCGGACACTTTTGATTAGCG----ATGTCGA
AAATGTAATGAATGTATTCCGGTTTAAATGGAAATTCATCCGGTTTGCAAACAAATCATCTAGTTATTTGTTCAAACTAC
GATTGTGATGTGTCCAGACGGATGGTGC-A--TATAGGATAGGATGACCGAGTCCGGTATCATGCATCCGCAGACGAATA
ATGTGTCTGTTTCCGTTTTGGGGATAGAGATGCCCTAAGCAAAGCAGTGTGTCCATCCTCCAACCGACGTCATCTCATCC
CATAGCCTTCGCCTCTATATAAGCTCTGCC-CCCTCTTCCCTCCCCTTTGCACCGTCGAATATCGATCACCGTTGACGAT
CGA-----------------------------AAGCTAGC--CAATCAAGGCAAGCTGAAATAGCTAGG----TAGCTAG
CAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCGCGGGCGGGGCG
GCGCGGCCGGGCAAGGTGCTGGTTCATGTGCCGAGCGGCGAGGTGGTGAGCTCGTACGAGGTTCTGGAGCGGCGGCTGCG
GGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACGGTGCACCTCATCTCCG
TCCCGCGCGACTTCGCCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGTCCGC
GACGCCTGAGTAGCTT-------GCATGCATACCTGCTTTGTGTAATCTA------------------------------
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>SNPs
SS------------------------------S--S----SS------------------------S-----S-------
----S------------------S---S--S-S---------S-S--------S--SS---S--S------S-----S-S
------------------------S-SS------S------------------S---S----------------SS----
----------SS---S-----S----SS-S-S-----S---S---------S---S--S--S---------S--S-----
------S----S---S--S--SS-----------------S-S--------------S--------------S-------
------------------S--S----------------------------------------------------------
-------------------------------------------------------------S------------------
------------------------------------------S------------SS-----------------------
-------------S------------------------------------------------------S-----------
------------------------------------------------------------------------S-------
--------------------------S-S----------------------------------------S--S-------
-------------------------------------S-------------S---------------------S------
------S----------------------SS---------S-----S---------------------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS--------------S-----------------------
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-------------------------------------------------------------S------------------
---------------------------------------------------------------S----------------
--------------S-----------------------------------------------------------------
----------SSSSSSSSSSSS---------S-----S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1001
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---------------------AGCTCTGCTACCCTCTTCCA---------------------------------------
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>reverse_2159
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------------------------------------------------------------------------------TT
TTGGCCCGTCAGATCTCC--------------------------------------------------------------
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